EWM22385.1, cds8314 (CDS) Nannochloropsis gaditana

Overview
NameEWM22385.1
Unique Namecds8314
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:427106..428573 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22385.1
Productc-myb like protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100066g30.10342.mrna
GbkeyCDS
End range.
End range428573
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:427106..428573 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM22385.1 vs. NCBI_GenBank
Match: gi|585102886|gb|EWM22385.1| (c-myb like protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 997.268 bits (2577), Expect = 0.000e+0
Identity = 489/489 (100.00%), Postives = 489/489 (100.00%), Query Frame = 0
Query:    1 MEEQASLAQTSSSTSRTSSAVDVGPVAESHGTVLPYQSQSIVEEPNHARMPMDKQEVEVRGAGGHAEGESLAWPYAATGCDVFINAAHKESNLPSGARQNGKARVSPPWTYFPNSCALGLGDRKPGVCPPHGVPGHPGRESTTLPFIVSAPMASRAAEPLSPPVAPFTYTAASPRAEFECEGQEGPRALGNSSSALQCQANAKEDVDVDTDRGNGTLKSGKGGGKGEKGGRPGNGGHGTPPNPVGGRKRKVPTPWTPAEDARLREGIQVVGPRQWLRISQEFMRGVRSETQCYQRWERTLKPGVKTGPWTREEDAVLTACVQSGMTRWSEIAKRIPGRLSKRVRERWTCQLHPSRKHHGLVPWTPEEEARLASVRARLGNRWVEIAKLFPGRSENDVKNKAYCSLRKQERRASRVRAEQEKAKAGKGSEVSVCAVAGAIAREGRAQDGRKKRRGKQRRELELEDVIDRKTLSKAHDTLSTIYQAALDED 489
            MEEQASLAQTSSSTSRTSSAVDVGPVAESHGTVLPYQSQSIVEEPNHARMPMDKQEVEVRGAGGHAEGESLAWPYAATGCDVFINAAHKESNLPSGARQNGKARVSPPWTYFPNSCALGLGDRKPGVCPPHGVPGHPGRESTTLPFIVSAPMASRAAEPLSPPVAPFTYTAASPRAEFECEGQEGPRALGNSSSALQCQANAKEDVDVDTDRGNGTLKSGKGGGKGEKGGRPGNGGHGTPPNPVGGRKRKVPTPWTPAEDARLREGIQVVGPRQWLRISQEFMRGVRSETQCYQRWERTLKPGVKTGPWTREEDAVLTACVQSGMTRWSEIAKRIPGRLSKRVRERWTCQLHPSRKHHGLVPWTPEEEARLASVRARLGNRWVEIAKLFPGRSENDVKNKAYCSLRKQERRASRVRAEQEKAKAGKGSEVSVCAVAGAIAREGRAQDGRKKRRGKQRRELELEDVIDRKTLSKAHDTLSTIYQAALDED
Sbjct:    1 MEEQASLAQTSSSTSRTSSAVDVGPVAESHGTVLPYQSQSIVEEPNHARMPMDKQEVEVRGAGGHAEGESLAWPYAATGCDVFINAAHKESNLPSGARQNGKARVSPPWTYFPNSCALGLGDRKPGVCPPHGVPGHPGRESTTLPFIVSAPMASRAAEPLSPPVAPFTYTAASPRAEFECEGQEGPRALGNSSSALQCQANAKEDVDVDTDRGNGTLKSGKGGGKGEKGGRPGNGGHGTPPNPVGGRKRKVPTPWTPAEDARLREGIQVVGPRQWLRISQEFMRGVRSETQCYQRWERTLKPGVKTGPWTREEDAVLTACVQSGMTRWSEIAKRIPGRLSKRVRERWTCQLHPSRKHHGLVPWTPEEEARLASVRARLGNRWVEIAKLFPGRSENDVKNKAYCSLRKQERRASRVRAEQEKAKAGKGSEVSVCAVAGAIAREGRAQDGRKKRRGKQRRELELEDVIDRKTLSKAHDTLSTIYQAALDED 489          
BLAST of EWM22385.1 vs. NCBI_GenBank
Match: gi|585100989|gb|EWM20993.1| (myb-related 3r-1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 161.384 bits (407), Expect = 4.567e-39
Identity = 74/146 (50.68%), Postives = 100/146 (68.49%), Query Frame = 0
Query:  255 WTPAEDARLREGIQVVGPRQWLRISQEFMRGVRSETQCYQRWERTLKPGVKTGPWTREEDAVLTACVQSGMTRWSEIAKRIPGRLSKRVRERWTCQLHPSRKHHGLVPWTPEEEARLASVRARLGNRWVEIAKLFPGRSENDVKNK 400
            WT  +DA+LR+ +   GP+ W +ISQE  +G+ ++TQC  RW + L+PG+  GPW  EEDAV+  C++SG+T+WSEIA+RIPGRL K+ RERW   L PS        W+ EE+  L + +AR GN W +IA L PGRSEN VKN+
Sbjct:  133 WTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSA---WSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNR 275          
BLAST of EWM22385.1 vs. NCBI_GenBank
Match: gi|585103684|gb|EWM22952.1| (myb-like protein [Nannochloropsis gaditana])

HSP 1 Score: 155.606 bits (392), Expect = 1.855e-38
Identity = 74/156 (47.44%), Postives = 97/156 (62.18%), Query Frame = 0
Query:  255 WTPAEDARLREGIQVVGPRQWLRISQEFMRGVRSETQCYQRWERTLKPGVKTGPWTREEDAVLTACVQSGMTRWSEIAKRIPGRLSKRVRERWTCQLHPSRKHHGLVPWTPEEEARLASVRARLGNRWVEIAKLFPGRSENDVKNKAYCSLRKQER 410
            WT  ED +LR+G+  VG   W  IS +F+   RS  QC  RW++ L+PG+  GPWT+EED ++  C Q+G+T W EIA R+ GRL K+ R+RW   L P+   H    WT EE+  LA  R   GN W +IAKL PGR EN +KN+ Y + R QER
Sbjct:   65 WTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKH---YWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQER 217          
BLAST of EWM22385.1 vs. NCBI_GenBank
Match: gi|585103683|gb|EWM22951.1| (myb-like protein [Nannochloropsis gaditana])

HSP 1 Score: 155.992 bits (393), Expect = 5.450e-38
Identity = 74/156 (47.44%), Postives = 97/156 (62.18%), Query Frame = 0
Query:  255 WTPAEDARLREGIQVVGPRQWLRISQEFMRGVRSETQCYQRWERTLKPGVKTGPWTREEDAVLTACVQSGMTRWSEIAKRIPGRLSKRVRERWTCQLHPSRKHHGLVPWTPEEEARLASVRARLGNRWVEIAKLFPGRSENDVKNKAYCSLRKQER 410
            WT  ED +LR+G+  VG   W  IS +F+   RS  QC  RW++ L+PG+  GPWT+EED ++  C Q+G+T W EIA R+ GRL K+ R+RW   L P+   H    WT EE+  LA  R   GN W +IAKL PGR EN +KN+ Y + R QER
Sbjct:  165 WTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHY---WTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQER 317          
BLAST of EWM22385.1 vs. NCBI_GenBank
Match: gi|585108315|gb|EWM26309.1| (transcriptional activator myb [Nannochloropsis gaditana])

HSP 1 Score: 158.303 bits (399), Expect = 6.599e-38
Identity = 80/171 (46.78%), Postives = 105/171 (61.40%), Query Frame = 0
Query:  245 GGRKRKVPTPWTPAEDARLREGIQVVGPRQWLRISQEFMRGVRSETQCYQRWERTLKPGVKTGPWTREEDAVLTACVQSGMTRWSEIAKRIPGRLSKRVRERWTCQLHPSRKHHGLVPWTPEEEARLASVRARLGNRWVEIAKLFPGRSENDVKNKAYCSLRKQERRASRV 415
            GG KR     W+  EDA LR  +   GP+ W +IS EF+ G RS+ QC  RW++ L+PG+  GPWT EED ++  CVQ G  +W+ IA  IPGRL K+ RERW   L P+ K      WT EE+  LA  +A+ GN W +IA+  PGRSEN VKN+   S R++E+ A R 
Sbjct:  161 GGGKR-----WSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQEGNLKWAAIADLIPGRLGKQCRERWYNNLDPALKK---GEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRREKAAGRA 323          
BLAST of EWM22385.1 vs. NCBI_GenBank
Match: gi|224001504|ref|XP_002290424.1| (MYB DNA binding protein/ transcription factor-like protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973846|gb|EED92176.1| MYB DNA binding protein/ transcription factor-like protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 142.124 bits (357), Expect = 8.509e-37
Identity = 68/146 (46.58%), Postives = 96/146 (65.75%), Query Frame = 0
Query:  255 WTPAEDARLREGIQVVGPRQWLRISQEFMRGVRSETQCYQRWERTLKPGVKTGPWTREEDAVLTACVQSGMTRWSEIAKRIPGRLSKRVRERWTCQLHPSRKHHGLVPWTPEEEARLASVRARLGNRWVEIAKLFPGRSENDVKNK 400
            W+  ED  LR  +  +G   +  IS++   G R+E QC  RW+++L+PG+  G W+ EEDA +  CV+SG+T+WSEIAKR+PGR+ ++V+E W   L P  K  G+  W+  E   L + + +LGNRW EIAKL PGRSEN VKN+
Sbjct:    2 WSEQEDQYLRRAVHTLGENSFKMISEKVFHGTRTEVQCKNRWKKSLQPGLIKGKWSTEEDATIIKCVESGITKWSEIAKRLPGRIGEQVKEHWVNNLDPDVK-KGV--WSQTEMNTLINAQKQLGNRWSEIAKLIPGRSENSVKNR 144          
BLAST of EWM22385.1 vs. NCBI_GenBank
Match: gi|545709430|ref|XP_005707025.1| (myb proto-oncogene protein [Galdieria sulphuraria] >gi|452823495|gb|EME30505.1| myb proto-oncogene protein [Galdieria sulphuraria])

HSP 1 Score: 154.066 bits (388), Expect = 1.367e-36
Identity = 74/158 (46.84%), Postives = 99/158 (62.66%), Query Frame = 0
Query:  255 WTPAEDARLREGIQVVGPRQWLRISQEFMRGVRSETQCYQRWERTLKPGVKTGPWTREEDAVLTACV-QSGMTRWSEIAKRIPGRLSKRVRERWTCQLHPSRKHHGLVPWTPEEEARLASVRARLGNRWVEIAKLFPGRSENDVKNKAYCSLRKQERR 411
            WT  ED  L+  + + G R W RIS+ F+   RS+ QC  RW++ L P +  GPWT +ED ++   V + G T+WS +AK +PGR+ K+ RERW   L+PS       PWTPEEE RL    A LGNRW E+AKLFPGR++N +KN    +LRK + R
Sbjct:  181 WTLEEDEELKRLVSIYGARNWKRISEHFVN--RSDVQCLHRWQKVLNPALNKGPWTEKEDNIICEFVKEHGPTKWSHLAKLLPGRIGKQCRERWFNHLNPSLNKK---PWTPEEEERLIKAHAVLGNRWAELAKLFPGRNDNAIKNHWNSNLRKLKTR 333          
BLAST of EWM22385.1 vs. NCBI_GenBank
Match: gi|298708729|emb|CBJ30691.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 147.517 bits (371), Expect = 3.513e-34
Identity = 74/157 (47.13%), Postives = 100/157 (63.69%), Query Frame = 0
Query:  255 WTPAEDARLREGIQVVGPRQWLRISQEFMRGVRSETQCYQRWERTLKPGVKTGPWTREEDAVLTACVQ-SGM--TRWSEIAKRIPGRLSKRVRERWTCQLHPSRKHHGLVPWTPEEEARLASVRARLGNRWVEIAKLFPGRSENDVKNKAYCSLRKQ 408
            WT  ED RLRE ++  G R W R+  E +  +RS+ QC  RW + L+PG+  GPWT EED+++  CV+ SG    +WS +A R+PGR+ K+ RERW   L PS K      W+PEE+  +   +A +GNRW EIAKL PGR+EN VKN+   S RK+
Sbjct:   97 WTKEEDTRLREIVEHHGARNW-RMVAEQLGTLRSDVQCLHRWNKVLRPGLHKGPWTEEEDSIVRECVEHSGAQKVKWSVVASRLPGRIGKQCRERWFNHLDPSIKKG---EWSPEEDRIVFGAQAYMGNRWCEIAKLLPGRTENAVKNRFNSSARKK 249          
BLAST of EWM22385.1 vs. NCBI_GenBank
Match: gi|1137209990|gb|OMO78642.1| (hypothetical protein CCACVL1_14239 [Corchorus capsularis])

HSP 1 Score: 138.272 bits (347), Expect = 4.222e-33
Identity = 71/165 (43.03%), Postives = 94/165 (56.97%), Query Frame = 0
Query:  245 GGRKRKVPTPWTPAEDARLREGIQVVGPRQWLRISQEFMRGVRSETQCYQRWERTLKPGVKTGPWTREEDAVLTACVQ-SGMTRWSEIAKRIPGRLSKRVRERWTCQLHPSRKHHGLVPWTPEEEARLASVRARLGNRWVEIAKLFPGRSENDVKNKAYCSLRKQ 408
            G  +R     WT  ED  L   +Q    + W +I++      R++ QC  RW++ L P +  GPW++EED ++   VQ  G TRWSEIAK +PGR+ K+ RERW   L+P  K      WT EEE  L       GNRW EIAKL PGR+EN +KN   CS+RK+
Sbjct:   37 GPTRRSTKGGWTEEEDKMLTIAVQKFNGKSWKKIAECVPD--RTDVQCLHRWQKVLNPNLIKGPWSKEEDDLIFELVQKQGKTRWSEIAKYLPGRIGKQCRERWCNHLNPDIKKSA---WTEEEELMLIRAHGTYGNRWAEIAKLLPGRTENSIKNHWNCSVRKK 196          
BLAST of EWM22385.1 vs. NCBI_GenBank
Match: gi|676387185|ref|XP_009036871.1| (hypothetical protein AURANDRAFT_7821, partial [Aureococcus anophagefferens] >gi|323452494|gb|EGB08368.1| hypothetical protein AURANDRAFT_7821, partial [Aureococcus anophagefferens])

HSP 1 Score: 132.109 bits (331), Expect = 7.051e-33
Identity = 70/157 (44.59%), Postives = 94/157 (59.87%), Query Frame = 0
Query:  255 WTPAEDARLREGIQVVGPRQWLRISQEFMRGVRSETQCYQRWERTLKPGVKTGPWTREEDAVLTACVQ---SGMTRWSEIAKRIPGRLSKRVRERWTCQLHPSRKHHGLVPWTPEEEARLASVRARLGNRWVEIAKLFPGRSENDVKNKAYCSLRKQ 408
            WT  ED RLRE ++  G + W R++   +  VRS+ QC  RW + L+PG+  GPWT +ED ++   V    +G  +WS IA ++PGR+ K+ RERW   L P  K      WTPEE+  L   +   GNRW EIAKL PGR+EN VKN+   S RK+
Sbjct:    2 WTEEEDNRLREIVETFGAKNWKRLAM-LLGNVRSDVQCLHRWNKVLRPGLSKGPWTADEDKIVKDMVLRHGAGNIKWSVIAAQLPGRIGKQCRERWFNHLDPEIKKG---DWTPEEDNILFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSARKR 154          

HSP 2 Score: 58.9214 bits (141), Expect = 8.259e-7
Identity = 36/97 (37.11%), Postives = 49/97 (50.52%), Query Frame = 0
Query:  254 PWTPAEDARLREGI--QVVGPRQWLRISQEFMRGVRSETQCYQRWERTLKPGVKTGPWTREEDAVLTACVQSGMTRWSEIAKRIPGRLSKRVRERWT 348
            PWT  ED  +++ +     G  +W  I+ +     R   QC +RW   L P +K G WT EED +L    +    RWSEIAK +PGR    V+ RW 
Sbjct:   54 PWTADEDKIVKDMVLRHGAGNIKWSVIAAQL--PGRIGKQCRERWFNHLDPEIKKGDWTPEEDNILFETQRVHGNRWSEIAKLLPGRTENAVKNRWN 148          
The following BLAST results are available for this feature:
BLAST of EWM22385.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102886|gb|EWM22385.1|0.000e+0100.00c-myb like protein, partial [Nannochloropsis gadit... [more]
gi|585100989|gb|EWM20993.1|4.567e-3950.68myb-related 3r-1-like protein [Nannochloropsis gad... [more]
gi|585103684|gb|EWM22952.1|1.855e-3847.44myb-like protein [Nannochloropsis gaditana][more]
gi|585103683|gb|EWM22951.1|5.450e-3847.44myb-like protein [Nannochloropsis gaditana][more]
gi|585108315|gb|EWM26309.1|6.599e-3846.78transcriptional activator myb [Nannochloropsis gad... [more]
gi|224001504|ref|XP_002290424.1|8.509e-3746.58MYB DNA binding protein/ transcription factor-like... [more]
gi|545709430|ref|XP_005707025.1|1.367e-3646.84myb proto-oncogene protein [Galdieria sulphuraria]... [more]
gi|298708729|emb|CBJ30691.1|3.513e-3447.13conserved unknown protein [Ectocarpus siliculosus][more]
gi|1137209990|gb|OMO78642.1|4.222e-3343.03hypothetical protein CCACVL1_14239 [Corchorus caps... [more]
gi|676387185|ref|XP_009036871.1|7.051e-3344.59hypothetical protein AURANDRAFT_7821, partial [Aur... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8341rna8341Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications