|
|
Properties
| Property Name | Value |
|---|
| Product | dna binding protein |
| Orig transcript id | gnl|cribi|Naga_100011g84.3478.mrna |
| Orig protein id | gnl|cribi|Naga_100011g84.3478 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:242814..244106 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8272 ID=rna8272|Name=rna8272|organism=Nannochloropsis gaditana|type=mRNA|length=2691bp
ATGTTGTTCAAACACCAGCTTCCTGGACCGGTGCGAAGCGGGGTCTCGAC
AGTGCTTGATGTATTGGTCCCTGCAAGCTCCCCCACTTCCGTGTACATTG
CTGTCACGTCAGGAACTTCGCGTCTCTATGTTTATCGATGGGATCGCTTT
CTTGGGGTCGTGGAAGCGCCCAATGCGATTACAAGCTGTAGACTTGTCCT
GATGAGAGGCGCCATCAAGCCGTCTGTGTCCCTGTTCATAGGCTGTCAGC
CTGCTGCCGTGTTCATCGTCGAGAATTTGGAGGCCACGCTTACTGGCATT
GACAACAATGGTAAAAAAAAAACTCCCGCCGGCTTTTTGCGCTTGGGAGT
GGATCAATTTCGCTCTGTCCTACCTGAAAAAGCTCTCAAGGTCATCAGTT
TCGAAGGAGGGGCCGTCGGAACTGCTCTTACGGAAGACATTTCGTCCGGA
AGAGACGTTTTCGCCGTCGTGGAGACAGAGGCTGCAATGGCTGTGTGCTG
CGTCTCCAGCTCTATGCAGGGTGATGCGCGACTTCCTTTCATCATTTTGT
CGGGTCGGCACAACTGCGGGCGAGGGCCAATGTTGTGTACCTCGACTGGG
GCTCATCTCTTGCTTGTTATTCATTCAAGAACCCAACAGCAGGTATCGAC
GACTGCTTCTCAACTTTACAGCGCACCTCTCCCAGGGGCGCGCTCTTCAC
TACGAAGCGACGCCGCGCCCTGCCCGGCCGGCACGCTGAGGAAAGGGTTT
GCGAGCAAAGTCATCGCCTTGGTTGAGTTCGCCGCCGGCGAGGCCAAAGA
CGTGGTCATTGCTGTGGAGGAAACCGGATGGTTGTCCCTGCTACCCGTTT
CACACGTCGAGGACATGCCCGAGAACGGAAAAACGCACCGGGTTCGCCTC
AGGTTGGGAGCCACCGATAAGAGGGTCCGAGCCGCAGTCGTTGTGGGCGA
TTTCCTGGCCTGCCTATCCTCTCGAGGAGTTGTGTGGCTTACTCCCTTGT
CCAATTGTTTTAGCAAGCTGCCAGATGAGGGACCGCGCTGGGAGGAGTCG
ATGGCGGTGCACTGCGCGCGCCTAAACTGCGCCCCCAACGTGGTGGCCGT
GGCCGCCTCCCCATCATCTTTGCTCCGCCCTGCTCTCTTCGTCCTCACAC
AACAAGGTCGCCTCCTGTGCTTTCAAGACCTCCCGTTCCCCCCCCTATCC
TCCGAACCCCCTCTGGACGCGCCAGTCAGGGTCGTGGAAGCGCGGTGCGA
GGAGAAAGCCTCCCTCCAGGTCGAAGCGATCCTCAGACGTGTGGAGGACG
CCTGCAGACGAACACAGGCCTCTCACCTGGAACTGGCGAAGACCGAGGAA
GATCTGAAGAGGCTGCGGGCAGCCTGGGCCGTGGCTGCGGGCAAGGGTTT
CCTGGTCGCTTCGATTGACGTGACACACGCTTCCTCCCCTGCTACAATAC
CCGCCCCGAGCCTCAAGGTGCGCTTGCAAAATGCCACTGAGGACGAGGCT
TTCTCTTTGCAAGGATGGTCGCTTATGCTAAGAGTCGAAGGGGCGGCTCC
CTCCATGTCGCCTGACCCCGTGGGCGGCCTCCTCCGAGCCCTGTCGCCGC
CCGGGGCGGGGGTCCTGGTGGGGGCAAGCTGGCCCCTTCCAGACCTGGGG
CCGAGGGAAGACTTTCAGGCAGAGACACCGCTTCCTGACACGGGCTCTCT
TCTCCCGCTGACGGCACGCCTCTCGCTTTGCTTGCCTTTCCTGACTTCCT
CGCCTAGTGCTAGGGGAGACGCAGGGATTGCAGGAATTTCGGAGCAGGCT
GGCCTGTGCCTGGAGCTCGGCTCGCGGCCGTTGGACATGCTTGATTTGGC
TCATCCTGTAAAAAGTGTACCTGCCACTCCTTCAGAGGTGCGGGCCCTGG
AGGTGGAGGCCAGAAAGCAGGGCCGTGGTCCGAGCTGGGAACGGTGTCTG
GCGCGGCATCTGCTTGCGGACGTGCTTGGGAAAGAGGGAGAGGGAGGAGC
TGAAATTAGAAATCTCAGTCAGAGGGAAGCGCCCAGGGGCGCTGAGCAAG
GGGGTATGTTGGGGTCATCGCCGAGGCCCCTTCTATCATCGACACTGCGT
ATCTTGTGGCCTGTGCTTTCCACAGGGAGGGAGCACCTTCAAAACTTCCA
CGGAGATGCAGCACCATGCGCCGCACCGTTACCAGCTTTAGCCGATATTC
TAGGTGCATGTGACGGAGCTAGGATGTCAATGAAAGGGCAAGAGCGGACA
TTGGCTATCCAAGCTCCGGAGGGCGAGGTCTTACTCGCCCGTCTGCTGGC
CGGGGACATGCGGGTCCGGATGGACGAGAGTGAGGGTGTCGAAGCGATGG
CTCTTCAGCTAAAACTTTATGGTACAGACCAAGGCCTTCTTAGCTTGCTC
AGGGCGACATGTTGTCAACGATTAGGACCGGGAGCATCAGTGCGCACGCG
GAGATTGTTGCTAACCGATACGCGTATGAAGACGCTCGAATCGGTTCATC
ATCAGCTTGCCGCGCTTGCAGCAGAGCTACAGAATGGATATGACGTTAGA
AATGGGAAGGAGGAAACAGATCGGAACCGTTTCGGGTGGAAATTCGATAT
GGCGCGACGAACAGCAAGACTGGCAGTCGTGCTGAGTCGAGAGGTCGACG
AGGCTTTCCTCCTAGATCTGCGACCGGACTTTCATGATTGA back to topprotein sequence of rna8272 >rna8272-protein ID=rna8272-protein|Name=rna8272|organism=Nannochloropsis gaditana|type=polypeptide|length=225bp
MGKKSIGNIRNKEENQNLSSKCRSRSSAPAKGSFVVKKSRIKAIAKQDPN
VGGLSADAVALVGIASQEMLERLLIGAAAHARASSSRQSGIKPDGLHSVT
ITPEDIQSFVLAAPELHFLGERVRESQASGYLEGYRTRTLNSSKVPSKGR
VRGLKALINDGHATVGGADDKDDFDEDDVVASMVVAGKAEDKTAGKGAQS
GARGEFAVGGHAHMLDLDEDYGEEG back to topmRNA from alignment at KK037248.1:242814..244106+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8272 ID=rna8272|Name=rna8272|organism=Nannochloropsis gaditana|type=mRNA|length=1293bp|location=Sequence derived from alignment at KK037248.1:242814..244106+ (Nannochloropsis gaditana)
TCGCTTTCTTTTAACGCGCTACAAGTTGAGCGCCTTGAGATCTGAAAGCC
CAGTCCCTGTTCTGTTTCACGAAATTGGCGTGTGGTAGCTGATTCCGATG
CCAATATGCCAGTCGAATGCAAGCTTATCCTGCCATTCTGCCATTCTAGA
CCGTaagcctcctctcctccccctgtgacctcccccacccccaacTTGCC
CCTCAGCGTGCAGTGGTCTGCCCAGCATGGTATgggcaagaaaagcattG
GCAACATCAGAAACAAGGAAGAAAACCAAAATCTATCATCGAAATGTCGA
AGCCGCTCTAGTGCTCCCGCTAAAGGCTCATTTGTGGTGAAAAAGGTATG
TCAAGTCACAAAAACCGCCAAAGAGACGTACGTACGTTTCTGGTCCTCAG
CAGCACGCATGACATTCACAGTCCCGAATAAAGGCGATTGCAAAACAAGA
TCCAAACGTAGGGGGGCTAAGCGCTGATGCGGTCGCCTTAGTCGGTACGT
GAAGCAACAGTAATACCTTCACACGTCGATACCAACATGGAACAATTTAT
TGTGCATCTCAAACGCAGGAATAGCCTCTCAGGAGATGTTAGAAAGGCTT
CTGATAGGTGCAGCTGCACATGCTCGAGCATCTTCTTCGAGGCAGAGCGG
GATAAAGCCAGATGGTCTTCATTCGGTCACAATCACTCCGGAAGATATGT
AAGCGCAGAATAATAATTGATCTTACTTGGCTTCTCGACAGACTGATTCT
GACACGGTCGCACGCGCATAAATCTCACAGACAATCGTTCGTCCTCGCGG
CTCCAGAGCTTCACTTTCTTGGTGAGCGCGTGAGGGAAAGCCAGGCGAGT
GGCTACTTAGAGGGATACCGGACACGAACGTTGAATTCCTCGAAAGTTCC
TAGCAAAGGCAGGGTGCGAGGTCTGAAGGCGTTGATCAATGATGGCCACG
CTACGGTAGGTGGTGCTGACGATAAAGACGATTTCGACGAGGATGATGTC
GTTGCGTCGATGGTTGTAGCAGGTAAAGCTGAAGATAAGACAGCCGGCAA
AGGGGCGCAAAGTGGAGCACGCGGTGAATTTGCCGTGGGGGGGCACGCCC
ACATGCTAGACTTAGATGAGGACTACGGTGAAGAAGGGTGACGCGATGCG
GCGCCTTGCACATGTACATTGACAAAGCTTGTGGAGTCGAGTCAGGTGAA
AACACAAGAAAAATAGCATATAAAAAGTAGGGGTCGCACCAGCCTGTGCG
TGCCTGGTACTTTCTTTTAATGTGTGAAGATATGTATCGTAGC back to topCoding sequence (CDS) from alignment at KK037248.1:242814..244106+ >rna8272 ID=rna8272|Name=rna8272|organism=Nannochloropsis gaditana|type=CDS|length=2712bp|location=Sequence derived from alignment at KK037248.1:242814..244106+ (Nannochloropsis gaditana)
ATgggcaagaaaagcattGGCAACATCAGAAACAAGGAAGAAAACCAAAA
TCTATCATCGAAATGTCGAAGCCGCTCTAGTGCTCCCGCTAAAGGCTCAT
TTGTGGTGAAAAAGTCCCGAATAAAGGCGATTGCAAAACAAGATCCAAAC
GTAGGGGGGCTAAGCGCTGATGCGGTCGCCTTAGTCGGAATAGCCTCTCA
GGAGATGTTAGAAAGGCTTCTGATAGGTGCAGCTGCACATGCTCGAGCAT
CTTCTTCGAGGCAGAGCGGGATAAAGCCAGATGGTCTTCATTCGGTCACA
ATCACTCCGGAAGATATACAATCGTTCGTCCTCGCGGCTCCAGAGCTTCA
CTTTCTTGGTGAGCGCGTGAGGGAAAGCCAGGCGAGTGGCTACTTAGAGG
GATACCGGACACGAACGTTGAATTCCTCGAAAGTTCCTAGCAAAGGCAGG
GTGCGAGGTCTGAAGGCGTTGATCAATGATGGCCACGCTACGGTAGGTGG
TGCTGACGATAAAGACGATTTCGACGAGGATGATGTCGTTGCGTCGATGG
TTGTAGCAGGTAAAGCTGAAGATAAGACAGCCGGCAAAGGGGCGCAAAGT
GGAGCACGCGGTGAATTTGCCGTGGGGGGGCACGCCCACATGCTAGACTT
AGATGAGGACTACGGTGAAGAAGGGTGAATgggcaagaaaagcattGGCA
ACATCAGAAACAAGGAAGAAAACCAAAATCTATCATCGAAATGTCGAAGC
CGCTCTAGTGCTCCCGCTAAAGGCTCATTTGTGGTGAAAAAGTCCCGAAT
AAAGGCGATTGCAAAACAAGATCCAAACGTAGGGGGGCTAAGCGCTGATG
CGGTCGCCTTAGTCGGAATAGCCTCTCAGGAGATGTTAGAAAGGCTTCTG
ATAGGTGCAGCTGCACATGCTCGAGCATCTTCTTCGAGGCAGAGCGGGAT
AAAGCCAGATGGTCTTCATTCGGTCACAATCACTCCGGAAGATATACAAT
CGTTCGTCCTCGCGGCTCCAGAGCTTCACTTTCTTGGTGAGCGCGTGAGG
GAAAGCCAGGCGAGTGGCTACTTAGAGGGATACCGGACACGAACGTTGAA
TTCCTCGAAAGTTCCTAGCAAAGGCAGGGTGCGAGGTCTGAAGGCGTTGA
TCAATGATGGCCACGCTACGGTAGGTGGTGCTGACGATAAAGACGATTTC
GACGAGGATGATGTCGTTGCGTCGATGGTTGTAGCAGGTAAAGCTGAAGA
TAAGACAGCCGGCAAAGGGGCGCAAAGTGGAGCACGCGGTGAATTTGCCG
TGGGGGGGCACGCCCACATGCTAGACTTAGATGAGGACTACGGTGAAGAA
GGGTGAATgggcaagaaaagcattGGCAACATCAGAAACAAGGAAGAAAA
CCAAAATCTATCATCGAAATGTCGAAGCCGCTCTAGTGCTCCCGCTAAAG
GCTCATTTGTGGTGAAAAAGTCCCGAATAAAGGCGATTGCAAAACAAGAT
CCAAACGTAGGGGGGCTAAGCGCTGATGCGGTCGCCTTAGTCGGAATAGC
CTCTCAGGAGATGTTAGAAAGGCTTCTGATAGGTGCAGCTGCACATGCTC
GAGCATCTTCTTCGAGGCAGAGCGGGATAAAGCCAGATGGTCTTCATTCG
GTCACAATCACTCCGGAAGATATACAATCGTTCGTCCTCGCGGCTCCAGA
GCTTCACTTTCTTGGTGAGCGCGTGAGGGAAAGCCAGGCGAGTGGCTACT
TAGAGGGATACCGGACACGAACGTTGAATTCCTCGAAAGTTCCTAGCAAA
GGCAGGGTGCGAGGTCTGAAGGCGTTGATCAATGATGGCCACGCTACGGT
AGGTGGTGCTGACGATAAAGACGATTTCGACGAGGATGATGTCGTTGCGT
CGATGGTTGTAGCAGGTAAAGCTGAAGATAAGACAGCCGGCAAAGGGGCG
CAAAGTGGAGCACGCGGTGAATTTGCCGTGGGGGGGCACGCCCACATGCT
AGACTTAGATGAGGACTACGGTGAAGAAGGGTGAATgggcaagaaaagca
ttGGCAACATCAGAAACAAGGAAGAAAACCAAAATCTATCATCGAAATGT
CGAAGCCGCTCTAGTGCTCCCGCTAAAGGCTCATTTGTGGTGAAAAAGTC
CCGAATAAAGGCGATTGCAAAACAAGATCCAAACGTAGGGGGGCTAAGCG
CTGATGCGGTCGCCTTAGTCGGAATAGCCTCTCAGGAGATGTTAGAAAGG
CTTCTGATAGGTGCAGCTGCACATGCTCGAGCATCTTCTTCGAGGCAGAG
CGGGATAAAGCCAGATGGTCTTCATTCGGTCACAATCACTCCGGAAGATA
TACAATCGTTCGTCCTCGCGGCTCCAGAGCTTCACTTTCTTGGTGAGCGC
GTGAGGGAAAGCCAGGCGAGTGGCTACTTAGAGGGATACCGGACACGAAC
GTTGAATTCCTCGAAAGTTCCTAGCAAAGGCAGGGTGCGAGGTCTGAAGG
CGTTGATCAATGATGGCCACGCTACGGTAGGTGGTGCTGACGATAAAGAC
GATTTCGACGAGGATGATGTCGTTGCGTCGATGGTTGTAGCAGGTAAAGC
TGAAGATAAGACAGCCGGCAAAGGGGCGCAAAGTGGAGCACGCGGTGAAT
TTGCCGTGGGGGGGCACGCCCACATGCTAGACTTAGATGAGGACTACGGT
GAAGAAGGGTGA back to top
|