EWM22478.1, cds8248 (CDS) Nannochloropsis gaditana

Overview
NameEWM22478.1
Unique Namecds8248
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:243045..243158 +
Alignment locationKK037248.1:243235..243307 +
Alignment locationKK037248.1:243382..243511 +
Alignment locationKK037248.1:243594..243954 +

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Properties
Property NameValue
Protein idEWM22478.1
Productdna binding protein
Orig transcript idgnl|cribi|Naga_100011g84.3478.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:243045..243158 +
KK037248.1supercontigKK037248.1:243235..243307 +
KK037248.1supercontigKK037248.1:243382..243511 +
KK037248.1supercontigKK037248.1:243594..243954 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046982protein heterodimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
Homology
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BLAST of EWM22478.1 vs. NCBI_GenBank
Match: gi|585102984|gb|EWM22478.1| (dna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 452.981 bits (1164), Expect = 4.122e-161
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0 
Query:    1 MGKKSIGNIRNKEENQNLSSKCRSRSSAPAKGSFVVKKSRIKAIAKQDPNVGGLSADAVALVGIASQEMLERLLIGAAAHARASSSRQSGIKPDGLHSVTITPEDIQSFVLAAPELHFLGERVRESQASGYLEGYRTRTLNSSKVPSKGRVRGLKALINDGHATVGGADDKDDFDEDDVVASMVVAGKAEDKTAGKGAQSGARGEFAVGGHAHMLDLDEDYGEEG 225
            MGKKSIGNIRNKEENQNLSSKCRSRSSAPAKGSFVVKKSRIKAIAKQDPNVGGLSADAVALVGIASQEMLERLLIGAAAHARASSSRQSGIKPDGLHSVTITPEDIQSFVLAAPELHFLGERVRESQASGYLEGYRTRTLNSSKVPSKGRVRGLKALINDGHATVGGADDKDDFDEDDVVASMVVAGKAEDKTAGKGAQSGARGEFAVGGHAHMLDLDEDYGEEG
Sbjct:    1 MGKKSIGNIRNKEENQNLSSKCRSRSSAPAKGSFVVKKSRIKAIAKQDPNVGGLSADAVALVGIASQEMLERLLIGAAAHARASSSRQSGIKPDGLHSVTITPEDIQSFVLAAPELHFLGERVRESQASGYLEGYRTRTLNSSKVPSKGRVRGLKALINDGHATVGGADDKDDFDEDDVVASMVVAGKAEDKTAGKGAQSGARGEFAVGGHAHMLDLDEDYGEEG 225
The following BLAST results are available for this feature:
BLAST of EWM22478.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585102984|gb|EWM22478.1|4.122e-161100.00dna binding protein [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8272rna8272Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications