EWM22473.1, cds8212 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22473.1 vs. NCBI_GenBank
Match: gi|585102979|gb|EWM22473.1| (Thioesterase type II, NRPS/PKS/S-FAS [Nannochloropsis gaditana]) HSP 1 Score: 686.797 bits (1771), Expect = 0.000e+0 Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0
Query: 1 MSIDISKHWSVLFYCQDFGAHGQGKRNLQTFFLFTSRENSRILKAVASTALTMTVSSDEIKAWLPMYKPLDKVRLRILCFPSAGSAENIYTGPAVRGTRREPNKLVSWAKDARAEILAIQYPGREQRRKEPFIKTCQAMAAAILPVVQEKLKEEDVPYVLIAHSCGNWIAYEMLCLIKTMAMPMPSMFFVSCMASPDIAASAKPWKPNREMNVSQLQAECRLWDVNEIVFRPDVWPNFEPLLRADFTLFDQYKHNIEAFHKFDFPIHGYCASKDRKISKKMVEGWRNFTRSDFDMELIQGNHLFVYNADARDSWFESITDLLVAEGF 327
MSIDISKHWSVLFYCQDFGAHGQGKRNLQTFFLFTSRENSRILKAVASTALTMTVSSDEIKAWLPMYKPLDKVRLRILCFPSAGSAENIYTGPAVRGTRREPNKLVSWAKDARAEILAIQYPGREQRRKEPFIKTCQAMAAAILPVVQEKLKEEDVPYVLIAHSCGNWIAYEMLCLIKTMAMPMPSMFFVSCMASPDIAASAKPWKPNREMNVSQLQAECRLWDVNEIVFRPDVWPNFEPLLRADFTLFDQYKHNIEAFHKFDFPIHGYCASKDRKISKKMVEGWRNFTRSDFDMELIQGNHLFVYNADARDSWFESITDLLVAEGF
Sbjct: 1 MSIDISKHWSVLFYCQDFGAHGQGKRNLQTFFLFTSRENSRILKAVASTALTMTVSSDEIKAWLPMYKPLDKVRLRILCFPSAGSAENIYTGPAVRGTRREPNKLVSWAKDARAEILAIQYPGREQRRKEPFIKTCQAMAAAILPVVQEKLKEEDVPYVLIAHSCGNWIAYEMLCLIKTMAMPMPSMFFVSCMASPDIAASAKPWKPNREMNVSQLQAECRLWDVNEIVFRPDVWPNFEPLLRADFTLFDQYKHNIEAFHKFDFPIHGYCASKDRKISKKMVEGWRNFTRSDFDMELIQGNHLFVYNADARDSWFESITDLLVAEGF 327
BLAST of EWM22473.1 vs. NCBI_GenBank
Match: gi|545356378|ref|XP_005643908.1| (alpha/beta-hydrolase [Coccomyxa subellipsoidea C-169] >gi|384245872|gb|EIE19364.1| alpha/beta-hydrolase [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 221.861 bits (564), Expect = 2.792e-67 Identity = 108/272 (39.71%), Postives = 160/272 (58.82%), Query Frame = 0
Query: 55 VSSDEIKAWLPMY----KPLDKVRLRILCFPSAGSAENIYTGPAVRGTRREPNKLVSWAKDARAEILAIQYPGREQRRKEPFIKTCQAMAAAILPVVQEKLKEEDVPYVLIAHSCGNWIAYEMLCLIKTMAMPMPSMFFVSCMASPDIAASAKPWKPNREMNVSQLQAECRLWDVNEIVFRPDVWPNFEPLLRADFTLFDQYKHNIEAFHKFDFPIHGYCASKDRKISKKMVEGWRNFTRSDFDMELIQGNHLFVYNADARDSWFESITDLL 322
V E + W P R R++CFP+AG+AE++YT G R+ + L+ W ++ AE LA+Q PGR R KEP I TC+ MAAA+LPV+ KL D PY++I HS G W A+E L L ++ +PMP F+S MA+P+I +PW+ ++ + + ECR WDVNE++F P +WP + L+RADFTLFD+Y+ F FPI + + DR+I ++MV W FT F+ I+G+HL+ +++ W +I + L
Sbjct: 21 VDDAEFRKWFPGLLLSRTSCPHPRWRVVCFPNAGNAEDMYTSEGT-GARKVSSPLLEWCRENDAECLAVQPPGRNMRMKEPCITTCRHMAAALLPVLAPKLL--DTPYIVIGHSVGTWNAFEFLMLAQSEGVPMPRHVFLSAMAAPNIPTEQRPWRRQHSLSEADFKEECRAWDVNEVLFTPALWPTYHSLMRADFTLFDEYEFTHTGASPFAFPITSFFGTSDRRIKEEMVVRWARFTTGGFECLPIEGHHLWPLVKESKVLWLGAIVERL 289
BLAST of EWM22473.1 vs. NCBI_GenBank
Match: gi|760446349|ref|XP_011400243.1| (Gramicidin S biosynthesis protein GrsT [Auxenochlorella protothecoides] >gi|675354836|gb|KFM27276.1| Gramicidin S biosynthesis protein GrsT [Auxenochlorella protothecoides]) HSP 1 Score: 213.001 bits (541), Expect = 2.165e-63 Identity = 102/264 (38.64%), Postives = 150/264 (56.82%), Query Frame = 0
Query: 71 DKVRLRILCFPSAGSAENIYTGPAVRGTRREPNKLVSWAKDARAEILAIQYPGREQRRKEPFIKTCQAMAAAILPVVQEKLKEEDVPYVLIAHSCGNWIAYEMLCLIKTMAMPMPSMFFVSCMASPDIAASAKPWKPNREMN----------------VSQLQAECRLWDVNEIVFRPDVWPNFEPLLRADFTLFDQYKHNIEAFHKFDFPIHGYCASKDRKISKKMVEGWRNFTRSDFDMELIQGNHLFVYNADARDSWFESI 318
+K L +LCFPSAG++E+ YT G RR P+ L+ W + AE LA+Q PGR R K F + ++A +LPVV +L PYV++ HS G W+A+E+L + +P+P +S + +PDI +PW+ R + S++Q ECR W V+EI+F P +WP ++P++RADF LFD+Y+ FDFPIH Y + D +I + MVEGW+ FT F I GNHL++ + A+ +W SI
Sbjct: 60 EKPALLVLCFPSAGTSEDTYTSEGT-GVRRAPSPLLDWCRANNAECLAVQPPGRNLRSKHAFADSAASLAKELLPVVASRLA--STPYVIVGHSLGTWLAFELLSAARDAGLPLPLHASLSALCAPDIPFDQRPWRQQRTLGEEDFKARGSMVLPLCVPSRVQEECRGWSVSEILFTPALWPTYQPIMRADFRLFDEYEFTRAGEAPFDFPIHAYWGTGDLRIKQWMVEGWQRFTSGSFACTPIDGNHLWIQDKAAKQAWLASI 320
BLAST of EWM22473.1 vs. NCBI_GenBank
Match: gi|302846489|ref|XP_002954781.1| (hypothetical protein VOLCADRAFT_118842 [Volvox carteri f. nagariensis] >gi|300259964|gb|EFJ44187.1| hypothetical protein VOLCADRAFT_118842 [Volvox carteri f. nagariensis]) HSP 1 Score: 212.616 bits (540), Expect = 1.689e-62 Identity = 102/270 (37.78%), Postives = 157/270 (58.15%), Query Frame = 0
Query: 74 RLRILCFPSAGSAENIYTGPAVRGTRREPNKLVSWAKDARAEILAIQYPGREQRRKEPFIKTCQAMAAAILPVVQEKLKEEDVPYVLIAHSCGNWIAYEMLCLIKTMAMPMPSMFFVSCMASPDIAASAKPWKPNREMNVSQLQAECRLWDVNEIVFRPDVWPNFEPLLRADFTLFDQYK--------------------HNIEAFHKFDFPIHGYCASKDRKISKKMVEGWRNFTRSDFDMELIQGNHLF-VYNADARDSWFESITDLL 322
R+RIL F SAG+AE+++T G RR P+ L+ W + + E+LA+Q PGR R +EPFI T QA A +LPVVQ L E VPY +++HS G WI +E+L ++ +P+P ++ +S M PD+ S +PW+ R + + Q E R WDVNE+VF PD+W +EP+LRAD T+FD+Y+ + FDFPI + + DR++ ++V W +TR+ F + + GNHL+ + N +A+ +W + +
Sbjct: 108 RMRILAFHSAGNAEDMWTSEGT-GVRRSPSPLLEWCRSSDVEMLAVQMPGRGSRAREPFITTAQAAARELLPVVQ-PLLESGVPYAVLSHSFGTWICFELLRAVRRAGLPLPRIWCLSAMPYPDVPYSLRPWRQQRALGDADFQEEVRGWDVNEVVFTPDMWQLYEPILRADCTVFDEYELQPDDPYKYDARQAADADSVAGLAPLEPFDFPIEAFWGNTDRRVRSELVAPWARYTRAGFRLTEVAGNHLWPINNREAKTAWLNQVVQAM 375
BLAST of EWM22473.1 vs. NCBI_GenBank
Match: gi|873224823|emb|CEM25340.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 204.912 bits (520), Expect = 1.220e-60 Identity = 111/266 (41.73%), Postives = 151/266 (56.77%), Query Frame = 0
Query: 74 RLRILCFPSAGSAENIYTGPAVRGTRREP--NKLVSWAKDARAEILAIQYPGREQ-RRKEPFIKTCQAMAAAILPVVQEKLKEEDVPYVLIAHSCGNWIAYEMLCLIK------------TMAMPMPSMFFVSCMASPDIAASAKPWKPNREMNVSQLQAECRLWDVNEIVFRPDVWPNFEPLLRADFTLFDQYKHNIEAFHKFDFPIHGYCASKDRKISKKMVEGWRNFTR--SDFDMELIQGNHLFVYNADARDSWFESITDLL 322
R R+LC SAGSAE IYT +G+ R P N L+ W D E+LA Q PGR R KEP I + Q A + V+ + V Y ++ HS G WIA+E+LCLI+ T +P+P F SCM +PD A +PW+ N+++N Q + EC WDVN+ VF D+W + PLLR DFT+FD Y + FD PI + A +DRKIS++MV W+ F + S F + I G+HLFVY++ AR +W + I L
Sbjct: 20 RFRVLCLHSAGSAETIYTN---KGSPRRPYPNPLLQWCIDNEVELLAAQLPGRPGPRAKEPRITSAQEAAKRLYEVMTPHFAD-GVSYAIVGHSVGTWIAFELLCLIREKLKQQETTSTTTPQVPLPKHLFFSCMVAPDWPADKRPWRQNKDLNEEQFKEECGHWDVNKEVF--DMWDVYGPLLRDDFTIFDCYTFTHDGCQPFDIPITAWYAKRDRKISEEMVSAWQRFVKNSSKFTLSSIDGHHLFVYDSGARTAWMDQIAHRL 279
BLAST of EWM22473.1 vs. NCBI_GenBank
Match: gi|308799841|ref|XP_003074702.1| (COG3208: thioesterase involved in non-ri (ISS) [Ostreococcus tauri] >gi|116000872|emb|CAL50552.1| Thioesterase [Ostreococcus tauri] >gi|1199287193|gb|OUS42341.1| thioesterase [Ostreococcus tauri]) HSP 1 Score: 196.823 bits (499), Expect = 4.317e-57 Identity = 96/251 (38.25%), Postives = 144/251 (57.37%), Query Frame = 0
Query: 72 KVRLRILCFPSAGSAENIYTGPAVRGTRREPNKLVSWAKDARAEILAIQYPGREQRRKEPFIKTCQAMAAAILPVVQEKLKEEDVPYVLIAHSCGNWIAYEMLCLIKTMAMPMPSMFFVSCMASPDIAASAKPWKPNREMNVSQLQAECRLWDVNEIVFRPDVWPNFEPLLRADFTLFDQYKHNIEAFHKFDFPIHGYCASKDRKISKKMVEGWRNFTRSDFDMELIQGNHLFVYNADARDSWFESITDLL 322
K R+R+LCFP+AG+ E+++T G RR+ + L+ W K E+LA+QYPGR R+ EP+ + +LPVV KL+E P+V+I HS G+W+A+E + L+++ M MP F+S PDI +PW N ++ + ECR WDVNE+VF P +W + L+RADF LFD+Y + F +P+ + DR I+++M W T +F++ I G+HLF D + W E I L
Sbjct: 76 KPRMRVLCFPNAGNQEDMFTSEGT-GPRRQSSALLEWCKSNECEVLAVQYPGRANRKSEPYAFDIADITVPLLPVVGPKLQE--CPFVIIGHSVGSWVAFEFMQLMRSRGMRMPEHVFLSAFPFPDIPHRDRPWHVNVLLDEDAFKEECRRWDVNELVFGP-LWEVYHDLMRADFHLFDKYDYAHSGKENFAWPLTMFYGESDRMITREMCAFWETHTTGEFELVNIPGHHLFPLQKDQKAMWLEKIAATL 322
BLAST of EWM22473.1 vs. NCBI_GenBank
Match: gi|551602790|ref|XP_005782941.1| (hypothetical protein EMIHUDRAFT_232873 [Emiliania huxleyi CCMP1516] >gi|485635878|gb|EOD30512.1| hypothetical protein EMIHUDRAFT_232873 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 194.512 bits (493), Expect = 4.357e-56 Identity = 111/333 (33.33%), Postives = 166/333 (49.85%), Query Frame = 0
Query: 11 VLFYCQDFGAHGQGK------------RNLQTFFLFTSRENSRILKAVASTALTMTVSSDEIKAWLPMYKPLDKV-RLRILCFPSAGSAENIYTGPAVRGTRREPNKLVSWAKDARAEILAIQYPGREQRRKEPFIKTCQAMAAAILPVVQEKLKEEDVPYVLIAHSCGNWIAYEMLCLIKTMAMPMPSMFFVSCMASPDIAASAKPWKPNREMNVSQLQAECRLWDVNEIVFRPDVW---PNFEPLLRADFTLFDQYKHNIEAFHKFDFPIHGYCASKDRKISKKMVEGWRNFTRSDFDMELIQGNHLFVYNADARDSWFESITDLLVAEGF 327
V +Y ++ GA G+ R + SRIL ++ V K W P +KP + R++CF +AGSAE+ YTG +R P V + E+LA++ PGRE RR EP +T A A+ PV+ KL E VPYV++ HS G W+ +E L L+ + +P VS +P + A+ +PW+ N+ M+ + ECR W V VF +W PN+E L+R DFTLFD Y++ + P+ Y A D+ + + V W++ T DF +E + GNHLF Y D R+ W + + + L +GF
Sbjct: 20 VTYYFENGGAEPPGEWTPPPCVPLTPVRTPEACIFIAHGSPSRIL------VRSLQVDDATFKKWFPKWKPPAATPKFRLVCFHNAGSAESNYTGKGLRMPNDNP--FVVACNERGGELLAVELPGRESRRAEPRYRTLSVAAEALFPVLAPKLNES-VPYVVVGHSMGTWMLFETLKLLMARGVRLPEQVVVSSFPAPSLPAAKRPWRANKGMDDDAFKEECRTWSV---VFSAGMWTKGPNYEALMRDDFTLFDAYEYAPAVAPQLPMPVSAYYARDDKNVKESHVATWKDMTCKDFRLEEVPGNHLFFYQYDVRNKWMDRVVESL-PDGF 339
BLAST of EWM22473.1 vs. NCBI_GenBank
Match: gi|551575091|ref|XP_005773272.1| (hypothetical protein EMIHUDRAFT_241727 [Emiliania huxleyi CCMP1516] >gi|485624875|gb|EOD20843.1| hypothetical protein EMIHUDRAFT_241727 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 194.126 bits (492), Expect = 7.134e-56 Identity = 111/333 (33.33%), Postives = 166/333 (49.85%), Query Frame = 0
Query: 11 VLFYCQDFGAHGQGK------------RNLQTFFLFTSRENSRILKAVASTALTMTVSSDEIKAWLPMYKPLDKV-RLRILCFPSAGSAENIYTGPAVRGTRREPNKLVSWAKDARAEILAIQYPGREQRRKEPFIKTCQAMAAAILPVVQEKLKEEDVPYVLIAHSCGNWIAYEMLCLIKTMAMPMPSMFFVSCMASPDIAASAKPWKPNREMNVSQLQAECRLWDVNEIVFRPDVW---PNFEPLLRADFTLFDQYKHNIEAFHKFDFPIHGYCASKDRKISKKMVEGWRNFTRSDFDMELIQGNHLFVYNADARDSWFESITDLLVAEGF 327
V +Y ++ GA G+ R + SRIL ++ V K W P +KP + R++CF +AGSAE+ YTG +R P V + E+LA++ PGRE RR EP +T A A+ PV+ KL E VPYV++ HS G W+ +E L L+ + +P VS +P + A+ +PW+ N+ M+ + ECR W V VF +W PN+E L+R DFTLFD Y++ + P+ Y A D+ + + V W++ T DF +E + GNHLF Y D R+ W + + + L +GF
Sbjct: 20 VTYYFENGGAEPPGEWTPPPCVPLTPVRTPEACICIAHGSPSRIL------VRSLQVDDATFKKWFPKWKPPAATPKFRLVCFHNAGSAESNYTGKGLRMPNDNP--FVVACNERGGELLAVELPGRESRRAEPRYRTLSVAAEALFPVLAPKLNES-VPYVVVGHSMGTWMLFETLKLLMARGVRLPEQVVVSSFPAPSLPAAKRPWRANKGMDDDAFKEECRTWSV---VFSAGMWTKGPNYEALMRDDFTLFDAYEYAPAVAPQLPMPVSAYYARDDKNVKESHVATWKDMTCKDFRLEEVPGNHLFFYQYDVRNKWMDRVVESL-PDGF 339
BLAST of EWM22473.1 vs. NCBI_GenBank
Match: gi|145341196|ref|XP_001415699.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144575922|gb|ABO93991.1| predicted protein [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 183.341 bits (464), Expect = 5.330e-53 Identity = 90/226 (39.82%), Postives = 129/226 (57.08%), Query Frame = 0
Query: 97 GTRREPNKLVSWAKDARAEILAIQYPGREQRRKEPFIKTCQAMAAAILPVVQEKLKEEDVPYVLIAHSCGNWIAYEMLCLIKTMAMPMPSMFFVSCMASPDIAASAKPWKPNREMNVSQLQAECRLWDVNEIVFRPDVWPNFEPLLRADFTLFDQYKHNIEAFHKFDFPIHGYCASKDRKISKKMVEGWRNFTRSDFDMELIQGNHLFVYNADARDSWFESITDLL 322
G RR + L+ +AK AE+LA+QYPGR R KE + +LPVV KL E PYV++ HS G+WIAYE L L++ + MP F+S PDI +PW+ N ++ + ECR WDVNE+VF D+W ++PL+RADF LFD+Y H + F +P+ + DR I+++M +GW T +F++ I G+HLF D + W I + L
Sbjct: 8 GARRATSPLLEFAKTHEAEVLAVQYPGRGNRSKESCAFEIDEIIHPLLPVVAGKLSE--CPYVVVGHSVGSWIAYEFLQLLRARGVRMPEHVFLSAFPYPDIPHDVRPWRINVLLDEEGFKDECRRWDVNELVF-GDIWKIYQPLMRADFHLFDKYDHVHDGKENFTWPLTVFHGESDRMITREMCQGWETHTTGEFELLAIPGHHLFPLQKDQKAMWLRKIAERL 230
BLAST of EWM22473.1 vs. NCBI_GenBank
Match: gi|612386933|ref|XP_007508988.1| (Thioesterase [Bathycoccus prasinos] >gi|412992361|emb|CCO20074.1| Thioesterase [Bathycoccus prasinos]) HSP 1 Score: 183.341 bits (464), Expect = 3.329e-52 Identity = 94/258 (36.43%), Postives = 157/258 (60.85%), Query Frame = 0
Query: 71 DKVRLRILCFPSAGSAENIYTGPAVRGTRREPNKLVSWAKDARAEILAIQYPGREQRRKEPFIK-TCQAMAAAILPVVQEKLKEEDVPYVLIAHSCGNWIAYEMLCLIK-TMAMPMPSMFFVSCMASPDIAASAKPWKPNREMNVSQLQAECRLWDVNEIVFRPDVWPNFEPLLRADFTLFDQYKHNIEAFHKFDFPIHGYCASKDRKISKKMVEGWRNFTRSDFDMELIQ-GNHLFVYNADARDSWFESITDLLVAE 325
++ LR++CF +AG+AE+++T + G RR + L+++ K+ +AE+L++Q PGR RR EP+ + Q + I P + +L+ DVPYV++ HS G W+A +++ ++K T + P FF+S +P I KPW+ N+ ++ + Q ECR WDV E+VF +W + PL+RADF LFD Y+++++ F + + + DR ISK MVE W T F +E++Q GNHLF +++ W + I ++ A+
Sbjct: 38 ERPNLRVICFANAGNAEDLFTNEGL-GERRIVSPLLTFCKNYKAELLSVQLPGRGSRRNEPWDEPKIQTVIREIAPTLANELR--DVPYVVVGHSVGCWLAVQLVDVLKSTYGVNEPLHFFLSNFPAPTIEDKDKPWRKNKHLSEREFQDECRRWDVQEVVFT-GIWKIYHPLMRADFCLFDSYENDLKE-KTFTSDVTAFHGTNDRMISKSMVEKWETMTTGAFALEIVQGGNHLFPLEKESKIDWLKRIVAVIEAK 290 The following BLAST results are available for this feature:
BLAST of EWM22473.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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