rna8227, rna8227 (mRNA) Nannochloropsis gaditana

Overview
Namerna8227
Unique Namerna8227
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length646
Alignment locationKK037248.1:130193..131413 +

Link to JBrowse

Properties
Property NameValue
Producth - or na -translocating f- v-type and a-type atpase (f-atpase) superfamily
Orig transcript idgnl|cribi|Naga_100011g39.3488.mrna
Orig protein idgnl|cribi|Naga_100011g39.3488
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:130193..131413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100011g39gene7969Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8227rna8227-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22488.1cds8203Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8227 ID=rna8227|Name=rna8227|organism=Nannochloropsis gaditana|type=mRNA|length=646bp
CAGACGCTGATGGAATTATGGAAGGAGAAACAGTCCAGATGACACAACGC
GCAGACCCATCGGAAATTCATGCGACGACACTGCCGAGGGCGTATTTTTC
TGTCTGTTTAAACAATGTCTGATGAGGCAAGCTTGATTCAGGAGCGATTA
GACGATTTGGCTTTGACCATGTTTAATGGCGTTTTAGAGGTCTCTCGCGT
AAGCGGAGATGAAGGGCGGAAAGATGATAAGTGCCACGTTGCGGCATCAG
AATTGGGCATAAAATTGGGTACCGTACTCCGCGAAATTGAGGAGGCGATA
GGAAATCTTCTGGTTATTCAACTACCAACCGCGGATCGATGTCAGCAAAT
TGACACTGTGAAAGTAACGCAAAGCAGAGTCAGGGAATTACAGTCGGAGT
ATGAGCGAGTGAAAATAGAGCTAGACACACTTGTGAGTGAGGCAGAAAAC
ATATCAATCAAGCTGCAGAGCGCATTCACATATCACGTGAAGAAGATCTG
AGCGCTACGCGACGGTTAGGAGAGGGCCGGAAGACGGGTGTGAGAAGGAA
AGCCGAGCAAATTCGAAAAATCTCAGTGTTGCGGAAAGTGGTTGCATATG
CATGCATGGGCAAAAATTGAAGAACATCTGTATTATAAAAATAAGC
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protein sequence of rna8227

>rna8227-protein ID=rna8227-protein|Name=rna8227|organism=Nannochloropsis gaditana|type=polypeptide|length=261bp
MSGAIVAPTRMALTMYKTKRVGAKKGYELLKKKSDALKVRFRDIMKDIAR
TKGNMADQGSSAFFSLTQAQYAAGDFRQQVLQGSLTASVRVHTHTDNVAG
VKLPVFRQYELQSEVKSKSDRDNLGLAQGGRQIKACKEKFTVFLTNLVRL
ASLQTSFITLDEALKVTNRRVNALENVTIPRIEAILAYINRELDELERED
FTRLKKVQGSKRTAQAAAEAAEEALHKAAAAAGARSSKIEGGLVKDVTAQ
YDTAGDSDIVF
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mRNA from alignment at KK037248.1:130193..131413+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8227 ID=rna8227|Name=rna8227|organism=Nannochloropsis gaditana|type=mRNA|length=1221bp|location=Sequence derived from alignment at KK037248.1:130193..131413+ (Nannochloropsis gaditana)
ATGTCAGGTGCTATTGTGGCACCCACGCGTATGGCTTTAACCATGTACAA
GGTAGGGACAGAAATGGGAATGGCGCAGAAGAAGCTGCCGTTTGACTTCT
CTAACCATCTTGCCGTTTATCCTTTAAATGTAGACGAAGCGCGTTGGTGC
CAAAAAAGGTTACGAATTGCTGAAGAAGAAGTCGGATGCATTGAAAGTTC
GCTTTCGTGATATAATGAAGGACATAGCGCGAACCAAAGGAAATATGGCT
GACCAGGTAGGTTTGTCCGAAGAACGAGCGCGAAAACGTGTGCCAGGCTG
TGCAAACTTGCGGGACTTCCACGGGCACTTGCGTTGGCATGACGAGAGAG
GCTGGGCCCTTATATTTGAAGATGATGATTGTTTGCAGACATGCCAGAGC
ATCGATTGCGGAAGGGTAGACAGTGGTGCCCTTTGGAACGGGTTTTTTCA
GGGATGATCTTGTGATGACAAGACAAAAGACATTCACCTGAACCAACGCC
GTTTTCCAGGGGTCAAGTGCTTTTTTCTCGCTTACGCAGGCGCAGTATGC
GGCAGGTGATTTCCGGCAACAAGTTTTGCAAGGCAGCCTGACGGCCTCAG
TGCGGGTACACACACACACGGACAACGTGGCAGGCGTGAAGCTGCCGGTG
TTTCGGCAATACGAGTTACAGAGCGAAGTAAAGAGTAAATCTGACAGAGA
CAATTTAGGGTTGGCGCAAGGCGGACGTCAAATCAAGGCCTGTAAGGAAA
AATTCACTGTATTCCTCACCAACCTTGTCCGACTTGCTTCTCTCCAGACT
TCCTTCATAACCCTCGACGAAGCCCTCAAGGTAACTCTTCTGCAGACATT
TGAGCAAGTATTTGTAAATGTTGCTTATGATGTCTCTTGCCATGCTCACC
CATAATTAACATTTCCGACTTATAATTCAGGTGACAAATCGCAGGGTGAA
CGCTCTTGAAAATGTTACGATTCCACGCATCGAGGCTATTCTGGCTTACA
TCAATCGTGAGCTGGATGAACTAGAGCGCGAGGATTTCACTCGTCTCAAG
AAAGTGCAGGGGAGTAAACGGACTGCACAGGCTGCAGCAGAAGCAGCTGA
GGAAGCTTTGCACaaggctgccgctgctgctggcgcGAGATCAAGCAAAA
TCGAGGGTGGTTTAGTCAAGGATGTCACGGCCCAGTACGACACTGCCGGG
GACAGTGATATCGTCTTTTGA
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Coding sequence (CDS) from alignment at KK037248.1:130193..131413+

>rna8227 ID=rna8227|Name=rna8227|organism=Nannochloropsis gaditana|type=CDS|length=3144bp|location=Sequence derived from alignment at KK037248.1:130193..131413+ (Nannochloropsis gaditana)
ATGTCAGGTGCTATTGTGGCACCCACGCGTATGGCTTTAACCATGTACAA
GACGAAGCGCGTTGGTGCCAAAAAAGGTTACGAATTGCTGAAGAAGAAGT
CGGATGCATTGAAAGTTCGCTTTCGTGATATAATGAAGGACATAGCGCGA
ACCAAAGGAAATATGGCTGACCAGGGGTCAAGTGCTTTTTTCTCGCTTAC
GCAGGCGCAGTATGCGGCAGGTGATTTCCGGCAACAAGTTTTGCAAGGCA
GCCTGACGGCCTCAGTGCGGGTACACACACACACGGACAACGTGGCAGGC
GTGAAGCTGCCGGTGTTTCGGCAATACGAGTTACAGAGCGAAGTAAAGAG
TAAATCTGACAGAGACAATTTAGGGTTGGCGCAAGGCGGACGTCAAATCA
AGGCCTGTAAGGAAAAATTCACTGTATTCCTCACCAACCTTGTCCGACTT
GCTTCTCTCCAGACTTCCTTCATAACCCTCGACGAAGCCCTCAAGGTGAC
AAATCGCAGGGTGAACGCTCTTGAAAATGTTACGATTCCACGCATCGAGG
CTATTCTGGCTTACATCAATCGTGAGCTGGATGAACTAGAGCGCGAGGAT
TTCACTCGTCTCAAGAAAGTGCAGGGGAGTAAACGGACTGCACAGGCTGC
AGCAGAAGCAGCTGAGGAAGCTTTGCACaaggctgccgctgctgctggcg
cGAGATCAAGCAAAATCGAGGGTGGTTTAGTCAAGGATGTCACGGCCCAG
TACGACACTGCCGGGGACAGTGATATCGTCTTTTGAATGTCAGGTGCTAT
TGTGGCACCCACGCGTATGGCTTTAACCATGTACAAGACGAAGCGCGTTG
GTGCCAAAAAAGGTTACGAATTGCTGAAGAAGAAGTCGGATGCATTGAAA
GTTCGCTTTCGTGATATAATGAAGGACATAGCGCGAACCAAAGGAAATAT
GGCTGACCAGGGGTCAAGTGCTTTTTTCTCGCTTACGCAGGCGCAGTATG
CGGCAGGTGATTTCCGGCAACAAGTTTTGCAAGGCAGCCTGACGGCCTCA
GTGCGGGTACACACACACACGGACAACGTGGCAGGCGTGAAGCTGCCGGT
GTTTCGGCAATACGAGTTACAGAGCGAAGTAAAGAGTAAATCTGACAGAG
ACAATTTAGGGTTGGCGCAAGGCGGACGTCAAATCAAGGCCTGTAAGGAA
AAATTCACTGTATTCCTCACCAACCTTGTCCGACTTGCTTCTCTCCAGAC
TTCCTTCATAACCCTCGACGAAGCCCTCAAGGTGACAAATCGCAGGGTGA
ACGCTCTTGAAAATGTTACGATTCCACGCATCGAGGCTATTCTGGCTTAC
ATCAATCGTGAGCTGGATGAACTAGAGCGCGAGGATTTCACTCGTCTCAA
GAAAGTGCAGGGGAGTAAACGGACTGCACAGGCTGCAGCAGAAGCAGCTG
AGGAAGCTTTGCACaaggctgccgctgctgctggcgcGAGATCAAGCAAA
ATCGAGGGTGGTTTAGTCAAGGATGTCACGGCCCAGTACGACACTGCCGG
GGACAGTGATATCGTCTTTTGAATGTCAGGTGCTATTGTGGCACCCACGC
GTATGGCTTTAACCATGTACAAGACGAAGCGCGTTGGTGCCAAAAAAGGT
TACGAATTGCTGAAGAAGAAGTCGGATGCATTGAAAGTTCGCTTTCGTGA
TATAATGAAGGACATAGCGCGAACCAAAGGAAATATGGCTGACCAGGGGT
CAAGTGCTTTTTTCTCGCTTACGCAGGCGCAGTATGCGGCAGGTGATTTC
CGGCAACAAGTTTTGCAAGGCAGCCTGACGGCCTCAGTGCGGGTACACAC
ACACACGGACAACGTGGCAGGCGTGAAGCTGCCGGTGTTTCGGCAATACG
AGTTACAGAGCGAAGTAAAGAGTAAATCTGACAGAGACAATTTAGGGTTG
GCGCAAGGCGGACGTCAAATCAAGGCCTGTAAGGAAAAATTCACTGTATT
CCTCACCAACCTTGTCCGACTTGCTTCTCTCCAGACTTCCTTCATAACCC
TCGACGAAGCCCTCAAGGTGACAAATCGCAGGGTGAACGCTCTTGAAAAT
GTTACGATTCCACGCATCGAGGCTATTCTGGCTTACATCAATCGTGAGCT
GGATGAACTAGAGCGCGAGGATTTCACTCGTCTCAAGAAAGTGCAGGGGA
GTAAACGGACTGCACAGGCTGCAGCAGAAGCAGCTGAGGAAGCTTTGCAC
aaggctgccgctgctgctggcgcGAGATCAAGCAAAATCGAGGGTGGTTT
AGTCAAGGATGTCACGGCCCAGTACGACACTGCCGGGGACAGTGATATCG
TCTTTTGAATGTCAGGTGCTATTGTGGCACCCACGCGTATGGCTTTAACC
ATGTACAAGACGAAGCGCGTTGGTGCCAAAAAAGGTTACGAATTGCTGAA
GAAGAAGTCGGATGCATTGAAAGTTCGCTTTCGTGATATAATGAAGGACA
TAGCGCGAACCAAAGGAAATATGGCTGACCAGGGGTCAAGTGCTTTTTTC
TCGCTTACGCAGGCGCAGTATGCGGCAGGTGATTTCCGGCAACAAGTTTT
GCAAGGCAGCCTGACGGCCTCAGTGCGGGTACACACACACACGGACAACG
TGGCAGGCGTGAAGCTGCCGGTGTTTCGGCAATACGAGTTACAGAGCGAA
GTAAAGAGTAAATCTGACAGAGACAATTTAGGGTTGGCGCAAGGCGGACG
TCAAATCAAGGCCTGTAAGGAAAAATTCACTGTATTCCTCACCAACCTTG
TCCGACTTGCTTCTCTCCAGACTTCCTTCATAACCCTCGACGAAGCCCTC
AAGGTGACAAATCGCAGGGTGAACGCTCTTGAAAATGTTACGATTCCACG
CATCGAGGCTATTCTGGCTTACATCAATCGTGAGCTGGATGAACTAGAGC
GCGAGGATTTCACTCGTCTCAAGAAAGTGCAGGGGAGTAAACGGACTGCA
CAGGCTGCAGCAGAAGCAGCTGAGGAAGCTTTGCACaaggctgccgctgc
tgctggcgcGAGATCAAGCAAAATCGAGGGTGGTTTAGTCAAGGATGTCA
CGGCCCAGTACGACACTGCCGGGGACAGTGATATCGTCTTTTGA
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Synonyms
Publications