EWM22470.1, cds8199 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22470.1 vs. NCBI_GenBank
Match: gi|585102976|gb|EWM22470.1| (hypothetical protein Naga_100011g35 [Nannochloropsis gaditana]) HSP 1 Score: 675.626 bits (1742), Expect = 0.000e+0 Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0 Query: 1 MATLQTMRYRYTYGRGLHINLGAWWTALAWVTCGLSWAFMLPPQGKPLRVRCTLCTTFARVASTRNNPDSLVTSQSTLTLAAELREELLSLVNIPPEIKEDRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRSVWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVIVRDIHQTLSPNLTKGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSRGTLEVGGVEHDLTMLRAPRHADALIKALQRAVPFDVFDMNGTFVETAFLDHELRVTQTHSTRFGTITSLYRRNHTN 326 MATLQTMRYRYTYGRGLHINLGAWWTALAWVTCGLSWAFMLPPQGKPLRVRCTLCTTFARVASTRNNPDSLVTSQSTLTLAAELREELLSLVNIPPEIKEDRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRSVWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVIVRDIHQTLSPNLTKGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSRGTLEVGGVEHDLTMLRAPRHADALIKALQRAVPFDVFDMNGTFVETAFLDHELRVTQTHSTRFGTITSLYRRNHTN Sbjct: 1 MATLQTMRYRYTYGRGLHINLGAWWTALAWVTCGLSWAFMLPPQGKPLRVRCTLCTTFARVASTRNNPDSLVTSQSTLTLAAELREELLSLVNIPPEIKEDRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRSVWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVIVRDIHQTLSPNLTKGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSRGTLEVGGVEHDLTMLRAPRHADALIKALQRAVPFDVFDMNGTFVETAFLDHELRVTQTHSTRFGTITSLYRRNHTN 326
BLAST of EWM22470.1 vs. NCBI_GenBank
Match: gi|1210531045|dbj|GAX10146.1| (hypothetical protein FisN_3Lh341 [Fistulifera solaris]) HSP 1 Score: 76.6406 bits (187), Expect = 1.980e-12 Identity = 71/299 (23.75%), Postives = 123/299 (41.14%), Query Frame = 0 Query: 29 AWVTCGLSWAFMLPPQGKPLRVRCTLCTTFARVASTRNNPDSLVTSQSTLTLAAELREELLSLVNIPPEI--KEDRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRSVWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVIVRDIHQTLSPNLTKGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSRGTLEVGGVEHDLTMLRA---PRHADALIKALQRAVPFDVFDMNGTFVETAFLDHELRVTQTHSTRFGTITSLYRR 322 A+V G S L PQ T+ F +N D L S A+ +E+LL L+ P + KE+ + + ++ +V L+ Y P QTL F+NL+LQG W ++++ +L G P P + +R++ Q + + +G ++N W+ DG +GT TV Y++N + + EH L + P+ AL+ L RA+P ++FD ++T +LD +LR+ + R + ++ R Sbjct: 19 AFVQLGRSSQSSLSPQNA-----ATIGPGFGVTVEKKNAVDGLTLS------VAQSKEKLLDLL---PRMTGKEEEF----RTVEALVNNLEANYQPAQTLDFLNLVLQGEWQLLFST---------------------------NLSGT-----------------PNPAKFRLRELFQRIECHKLEGKLINEATWDLAEQGDGHFECSGTFTVDCSYKINQGARMILNLDEHILKPAKGTKIPKDVPALVGLLHRAMPKEMFDPADHAIDTTYLDGDLRIARHTGPRLEGVRDIFIR 255
BLAST of EWM22470.1 vs. NCBI_GenBank
Match: gi|1210524986|dbj|GAX16178.1| (hypothetical protein FisN_3Hh341 [Fistulifera solaris]) HSP 1 Score: 74.7146 bits (182), Expect = 8.876e-12 Identity = 61/252 (24.21%), Postives = 112/252 (44.44%), Query Frame = 0 Query: 76 STLTLAAELREELLSLVNIPPEI--KEDRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRSVWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVIVRDIHQTLSPNLTKGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSRGTLEVGGVEHDLTMLRA---PRHADALIKALQRAVPFDVFDMNGTFVETAFLDHELRVTQTHSTRFGTITSLYRR 322 STL++A + +E+LL L+ P + KE+ + + + +V L+ Y P QTL F+NL+LQG W ++++ +L G P P + +R++ Q + + +G ++N W+ DG+ +GT TV Y++N + + EH L + P+ AL+ L RA+P ++FD ++T +LD +LR+ + R + ++ R Sbjct: 54 STLSVA-QSKEKLLDLL---PRMTGKEEEFRTV----EALVNNLEANYQPAQTLDFLNLILQGEWQLLFST---------------------------NLSGT-----------------PNPAKFRLRELFQRIERHKLEGKLINEATWDLAEQGDGNFECSGTFTVDCSYKINQGARMILSLDEHILKPAKGTKIPKDVPALVGLLHRAMPKEMFDPADHAIDTTYLDGDLRIVRHTGPRLEGVRDIFIR 253
BLAST of EWM22470.1 vs. NCBI_GenBank
Match: gi|219124851|ref|XP_002182708.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406054|gb|EEC45995.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 73.9442 bits (180), Expect = 2.116e-11 Identity = 70/288 (24.31%), Postives = 117/288 (40.62%), Query Frame = 0 Query: 42 PPQGKPLRVRCTLCTT--FARVASTRNNPDSLVTSQSTLTLAAELREELLSLVNIPPEI--KEDRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRSVWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVIVRDIHQTLSPNLTKGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSRGTLEVGGVEHDLTMLRA---PRHADALIKALQRAVPFDVFDMNGTFVETAFLDHELRVTQTHSTRFGTITSLYRR 322 PP LR T+ F + T+N ++S AAE++ ELL L+ P + +ED + +R++ +V L+ Y P QTL F+NL +QG W ++++ +L G P P + +R++ Q + N G V N W+ D TGT +V+ Y +N + V +H L R P+ L+ L RA+P +FD + ++T +LD +LR+ + R ++ R Sbjct: 39 PPLDPTLRSAVDAFTSKGFEKRDDTKNENQGEFANKS----AAEIKGELLELL---PSMTGQEDEF----RRVEELVNALEARYQPAQTLTFLNLAMQGSWQLLFST---------------------------NLSG-----------------TPNPAKFRLRELTQRIECNNLDGVVTNQALWDLAEAGDAAFDATGTFSVKCNYSINQGARMIVDLEDHLLQPARGSAIPQDVQGLVGYLHRAMPKTLFDPSDHAMDTTYLDVDLRIVRYTGARLEGSRDIFMR 271
BLAST of EWM22470.1 vs. NCBI_GenBank
Match: gi|298710075|emb|CBJ31791.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 65.855 bits (159), Expect = 7.115e-9 Identity = 60/257 (23.35%), Postives = 98/257 (38.13%), Query Frame = 0 Query: 73 TSQSTLTLAAELREELLSLVNIP---PEIKEDRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRSVWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVIVRDIHQTLSPNLT-KGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSRGTLEVGGVEHDLTMLRAPRHADALIKALQRAVPFDVFDMNGTFVETAFLDHELRVTQTHSTRFGTITSLYRRNHT 325 T++ + E + ELL V P P + R E R+ ++V L+ TY P T+ F N QG W Y S + +P ++ Q + P KG + N + W D+G+ G L V Y + RG + +H L PR L++ L+RA+P+++FD + +ET FLD LR+ + +F + +++ R T Sbjct: 28 TTRKQVGSIEEAKTELLGRVGFPTEHPGAERPRLEE--ARVGYLVEVLEGTYKPIHTVGFFNFAAQGEWDLAYTSAAM---------------------------------------------VPIGPRLTAHQQFQRIEPGEGLKGNLTNIITWTLK-----DEGIDGRLEVMCDYSFDPRGRMNTSLRKHLLLPDGMPRDPQELVRVLRRAMPYELFDPDDHAMETTFLDDTLRIVKHRGPKFEGLVNIFARRAT 232 The following BLAST results are available for this feature:
BLAST of EWM22470.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|