rna8223, rna8223 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8223
Unique Name	rna8223
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3261
Alignment location	KK037248.1:122753..124470 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100011g35.3470.mrna
Orig protein id	gnl\|cribi\|Naga_100011g35.3470
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037248.1	supercontig	KK037248.1:122753..124470 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100011g35	gene7965	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22470.1	cds8199	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8223	rna8223-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037248.1:122753..124470-
coding sequence from alignment at KK037248.1:122753..124470-

mRNA sequence

>rna8223 ID=rna8223|Name=rna8223|organism=Nannochloropsis gaditana|type=mRNA|length=3261bp
GCTCGCTCCCCGCCTTTCTGGCCTCAAGCACCCCCCAGGCACCCCGCATG
TCCTTCGAGTCCATATTTCACGAGCTGTCTTGTTCCCAACAAGAAAATGC
CAGTACCTTCTCCTCTACGAAAATAAATGCCAAAGCTGGACCTGGTGGCG
GGCGTGCTTCAATATCTAGTTGTTGATTATTTTCGGACAAGACTTCCTAG
CTACCAGGTATGAGCGATACTAGGTTTTCTGCTTTTTTATAACGCCTGTA
CATGCTTCTCTGCCCGTGTGGTAACCTATCTTCGCCATAAGACGAGAAAA
TATGTTCGATGAAACGCGGCCCAGGGAGGTGACTTCCAGGCCATCGAGGC
AGTGGGCCTGGAATTGGACATCCTGCGATTGCCACAAGATGCACGCCACA
GATATGGCAACCTTGTCTGCGCAGTCAGATAACATCTCTCCAGACACATC
AGATGAATCTTTAGGAAGTGCGAGGGGAGCATTTGTCTCATCGCATGATC
GAACACAGCCCAACGCTTCTGCCATTGTCGTATCCTCAACTGGAGTAGAT
AGCCAAGCCTTTCCCTCTTTTTTGTTCACCCTCCATCCGTCCTCTACTTC
GTGATCCCTTTCCTTGTTCTTCACGCTCTTGCAGGATATTTCAATCTCGT
CCTGTGCCTTCGTTTTTACCTCATCTCGCGTCAGCCATCCTCCGTCTGGC
TCCTGCACCTTATTTCCACAGCCCTTTGCATTGTCTATTTCTCGCTCAAC
TACTGCGCACTGAGCACCTGCCATGCATACATGATGGCCCCTGTCCATAT
TTACTATTTGATTACTGTGTATACGGATTGAAGAACTCGTTTCTGTTGCT
CTGGCCCCGGACGGACCTAGTTTCGACAAGACCTGTCAGGAAAAAGCGGA
AGAGGACACCACCCTGGGTTACTTGTCCTTCTCCATGAATGAGGCCGACT
CTTACCTCGTCCCACGTTTCCCATCTGTCAGAAGTGACTAGTGGATGCCA
TAGCAATAATGAATTCGACCGCGGTTTGTCAGAACTACGCTCAGTCTCCA
TCGCGATTTCTGATATCTCAATCCATGTCATTGGCCCGATCACTTTGCGG
TTCGGCTCCGGACTTTCGCTTGAGGAAGCACTTTTTCCTACATACCAATT
GTTATTCCTATCAGTATTTTCCATCGGCTGCACCTGCGACAGCACAGGTG
CTTTTATGATACGTATGTGAGTTCGTACCGGAGTGAGGAGGTTGGAGTGT
GAGCCTTGCAGCCCCCAAAAGAGGTCTTGCAGTCTCCCAAGAAATGGAGA
GTGCCCGAGTTTACAACAGTATTGATGGAAAATCCCGGGGAAAAAGCTCG
TCGCGTGAGACGGAGGATTGGGAAACCATCCCTCAGGCTTTTCGAAGAGG
CCGTCGGGGGGAACGGGCGGGGGCTTATTTGAGCGATCAGCAGCAGCGCG
GGCCCCTCCAGAGGCGAGCCAGCAAGGGAACACGCGTGCTCGTCACAATG
CGCATGATGCTCACAGATTGATTGATTTCAGGTAACTACATGATAAAGGT
ATTGTCCTTTCTCACATATTCTAGGAGTGATTCTGAAAATAGGGTGTAAC
GAACGGCCAGGCGCCCGCGAGAACAGGGATGCCGACAGGTGGTTCATCTT
TCCTTTCTAGCTTGACGAAGCGGAAAAAATCCCCCGAGCAGTTGGTAAAG
CTCGCGGTGGCATGTCTCCACGAATTACCTGCAGTAGAGGATGCAAGCTG
GACATGTCCAGGCGTAGATGGCACGAAAGCGACTGTGCCCGCGATGGACG
GGCTAAACCGGGGTGAGCCAGGCCCCAGCAAGCAGCAGAAGCAAGATGAG
CTAACCTCGTCGAGGCACTCCATCTCATCTTCGGCACCATCCAATCCAGA
CGCATCTCGCACTTCTTCAGCGGGTAGTGATGCCGGAGCCTCGCGGCGGT
CCAGCTTCTTTTTGAGTGCTTTTGGCAAGAAAGAAGCCCACTCACATGAT
TCTGGCTCCGCGCCACCCCCACACTCGAGCGCGGGATCAAGCAGAGACGG
CAGCGCAGCTGACGCGTCAACCTCTGGAAAGGGAAGCGTGGGTCAATCCG
GAATAGAGGGTGATTCTGTGATGGAGCGGCTAGCCAAGCGGCTGTCTCAG
ATGAAGCTGGTGCTGTATGGAGACGGGGAGAAAGAGGTTGACAAGGACAA
GTGCGTGGACTTGGCGGAGAATATAATCAAGGAGGGACTCATGCCGCTGC
TTCTGGACCGATTCACTAATCTCCCCTTCGAAGCCCGCAAAGATGCCGCT
CAAATCTTTAACAATATCGCACGGCACAACCATGCGGGGTTTGCGGATCC
CTACATCGCCGACCACCACTTCTCCATCCTGGAACAGCTCATCAGTGGCT
ATGGACACCCTGAAGTCGCTTTGAACTGCGGGTCCATGCTGCGGGAGGCA
GCGCGGCATGAGAAGGTGGCTCGGCGCATCCTTTTCTCGCCCCACGTCTG
GCCCTTCTTCGACACCTTCGTGCACCTGCCCAACTTCGACGTGGCCTCGG
ACTCGTTCGCCACCCTGAGGGACCTTCTGACCAAGCACAAGACTGTGGCT
GCGGAGTTCCTTGAGGAGGAATACGAACAGGTTTTTGACAAGTACAAGAG
CCTTCTCGCCTCGGACAACTATGTGACGCGCCGCATGTCGCTCAAGATGC
TGGGGGAGATCCTCCTGGACCGGTCCAACTTCAACGTCATGATGCGTTAC
ATCTCGTCCAAGGAAAATCTGAAGATGATCATGAACCTGCTGCGGGACAA
GAGCGCTTCGATCCAGTTCGAGGCCTTCCACGTCTTCAAGGTCTTCGTGG
CGAACCCGAAGAAGCCCCCAGCGATCGTCAAGATTCTGGTCACGAACCGC
GACAAGCTGGTTACCTACCTAACCCACTTCCACACAGACAAGGACGACGA
GCAGTTCCGAGAGGAAAAGTCCCTGCTCGTCAACACCCTCGCCAATCTCG
ACTACGAAGAGGCGGCCACGTAGGCTCTGGAGACTTTCGAAGGACGAAAT
TCGTGGGAGCAGCTGAGTTGGGAGGGGGATCGAGCTCGCGGCGGTCAGGC
CGGAGAGGGGAGGTGCGGTCTTTGGCCCCTCAGACACTCTGTTACGCGCA
CCACGTTATCAATATGAAATGAGATGCGCCCTCTTTGTCACGGATTGTTG
CTTGTTAATTTGGGTGAAAATGAGGGCAAAAATGAGAAAGGAATTCAGTC
CGTTATACACA

protein sequence of rna8223

>rna8223-protein ID=rna8223-protein|Name=rna8223|organism=Nannochloropsis gaditana|type=polypeptide|length=326bp
MATLQTMRYRYTYGRGLHINLGAWWTALAWVTCGLSWAFMLPPQGKPLRV
RCTLCTTFARVASTRNNPDSLVTSQSTLTLAAELREELLSLVNIPPEIKE
DRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRS
VWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVI
VRDIHQTLSPNLTKGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSR
GTLEVGGVEHDLTMLRAPRHADALIKALQRAVPFDVFDMNGTFVETAFLD
HELRVTQTHSTRFGTITSLYRRNHTN

mRNA from alignment at KK037248.1:122753..124470-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8223 ID=rna8223|Name=rna8223|organism=Nannochloropsis gaditana|type=mRNA|length=1718bp|location=Sequence derived from alignment at KK037248.1:122753..124470- (Nannochloropsis gaditana)
TCGAGATCAAATTAGCAATAGCACAGGGGTGGCGATGAGATAAGAAATTT
CCAGGAAGCATTTCACTGTATATTATATATACAAGCTCCCCCGGAAATCG
GCCGTACAACGATGGGGCATCTAAGTCCGACGAAAATGATGTCAATGGAA
CCACGTCGCATCTCATTTGCACACCCAGTCGGAAGAAATTGGCGTACTTT
CAATGAAAGGTTATGTTCAGCCTCAAAAGGCGTGACAATTTGATGTAGTA
GAAGTGCGCTATCCCTTTTTTTCAGAAATTGAAGAAGATGGCCGGGATGG
GGGGGGAAAGGAATAAAAAAATACTAGATTGTTGTTCTCTCTCGAATTGG
CCGCATGAGAGCGTACTACGCCTCGATCATCCGTAGAGCCTCTTAGTCGT
TACTTGTGAATAAGTAATAATGCTGCTTTGAAGCAAACTAATTCTATAAG
TGATATACGCTTGAGAAGTTTGTTTTGGATCTAGAATGTATGGTTTACGA
ACACATGCAGCGGGACAGAACTTAGCGGGAAAAGATACTCCCCCAGCTTG
CCGCGAGCTAATACACGTACTCATATCCCAACACTTTTCTTCTGGGACGG
TTGTAATATGGCGACATTGCAGACCATGCGGTATCGGTACACATATGGTA
GAGGTCTCCACATTAATTTAGGAGCTTGGTGGACTGCACTCGCTTGGGTG
ACTTGTGGCCTGTCCTGGGCGTTCATGCTTCCCCCCCAAGGAAAACCGCT
GCGAGTACGTTGTACCTTGTGTACGACATTTGCTCGGGTAGCTTCCACTA
GGAATAATCCAGACTCGCTGGTGACTTCACAGTCGACTTTGACGCTTGCT
GCTGAGCTTCGCGAGGAGCTTTTGTCATTGGTTAATATCCCACCAGAAAT
AAAAGAGGACAGATATGAAGCTATTGCACAGCGGATCGATTTCGTCGTGG
GTCAGCTGAAAGAGACATATGTGCCTCCACAGACCCTTCCGTTCATGAAT
CTACTATTGCAAGGATGTTGGTTAAATATTTACAATTCCTGGACTGTGCG
AAGGAGCGTCTGGGAAAAGCGTGACAGTTCGATGGATGCGGAGGAAGAGG
AGGACGAGGACGACTTCTTGGACCTGCTCGGTCCTGTTGAAGAAGATGAT
GTAGCAGCTGGCGCGAATAAGAGACCTTTGCATCTTCCGACACCCACACA
AGTGATAGTCCGCGACATTCATCAGACCCTTTCACCCAACCTGACTAAAG
GGGCGGTTGTCAATTCGGTAGACTGGGAGTGCACGGCTGGCGAAGACGGG
GACAAGGGCTTGACGGGGACGTTGACAGTGCGTGGAGGCTACGAGGTGAA
CAGCAGAGGTACTTTGGAAGTAGGTGGTGTGGAGCATGACTTGACGATGT
TGCGGGCCCCGCGGCATGCTGACGCGCTCATCAAAGCACTGCAGCGGGCT
GTCCCCTTCGACGTCTTCGACATGAACGGGACGTTCGTGGAGACGGCATT
CTTGGACCACGAGCTCCGCGTCACACAGACTCACAGCACGCGCTTTGGCA
CAATAACGAGCCTGTACAGGCGCAACCATACAAATTAGCGAGCGAACACA
GAGGCATAAGTGTGACAAGTTGAGAACGGCACAAAGAAAGTAGAGTATGT
GTATAACGGACTGAATTCCTTTCTCATTTTTGCCCTCATTTTCACCCAAA
TTAACAAGCAACAATCCG

Coding sequence (CDS) from alignment at KK037248.1:122753..124470-

>rna8223 ID=rna8223|Name=rna8223|organism=Nannochloropsis gaditana|type=CDS|length=981bp|location=Sequence derived from alignment at KK037248.1:122753..124470- (Nannochloropsis gaditana)
ATGGCGACATTGCAGACCATGCGGTATCGGTACACATATGGTAGAGGTCT
CCACATTAATTTAGGAGCTTGGTGGACTGCACTCGCTTGGGTGACTTGTG
GCCTGTCCTGGGCGTTCATGCTTCCCCCCCAAGGAAAACCGCTGCGAGTA
CGTTGTACCTTGTGTACGACATTTGCTCGGGTAGCTTCCACTAGGAATAA
TCCAGACTCGCTGGTGACTTCACAGTCGACTTTGACGCTTGCTGCTGAGC
TTCGCGAGGAGCTTTTGTCATTGGTTAATATCCCACCAGAAATAAAAGAG
GACAGATATGAAGCTATTGCACAGCGGATCGATTTCGTCGTGGGTCAGCT
GAAAGAGACATATGTGCCTCCACAGACCCTTCCGTTCATGAATCTACTAT
TGCAAGGATGTTGGTTAAATATTTACAATTCCTGGACTGTGCGAAGGAGC
GTCTGGGAAAAGCGTGACAGTTCGATGGATGCGGAGGAAGAGGAGGACGA
GGACGACTTCTTGGACCTGCTCGGTCCTGTTGAAGAAGATGATGTAGCAG
CTGGCGCGAATAAGAGACCTTTGCATCTTCCGACACCCACACAAGTGATA
GTCCGCGACATTCATCAGACCCTTTCACCCAACCTGACTAAAGGGGCGGT
TGTCAATTCGGTAGACTGGGAGTGCACGGCTGGCGAAGACGGGGACAAGG
GCTTGACGGGGACGTTGACAGTGCGTGGAGGCTACGAGGTGAACAGCAGA
GGTACTTTGGAAGTAGGTGGTGTGGAGCATGACTTGACGATGTTGCGGGC
CCCGCGGCATGCTGACGCGCTCATCAAAGCACTGCAGCGGGCTGTCCCCT
TCGACGTCTTCGACATGAACGGGACGTTCGTGGAGACGGCATTCTTGGAC
CACGAGCTCCGCGTCACACAGACTCACAGCACGCGCTTTGGCACAATAAC
GAGCCTGTACAGGCGCAACCATACAAATTAG

Synonyms

Publications