EWM22470.1, cds8199 (CDS) Nannochloropsis gaditana

Overview
NameEWM22470.1
Unique Namecds8199
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:122883..123863 -

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Properties
Property NameValue
Protein idEWM22470.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100011g35.3470.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:122883..123863 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM22470.1 vs. NCBI_GenBank
Match: gi|585102976|gb|EWM22470.1| (hypothetical protein Naga_100011g35 [Nannochloropsis gaditana])

HSP 1 Score: 675.626 bits (1742), Expect = 0.000e+0
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
Query:    1 MATLQTMRYRYTYGRGLHINLGAWWTALAWVTCGLSWAFMLPPQGKPLRVRCTLCTTFARVASTRNNPDSLVTSQSTLTLAAELREELLSLVNIPPEIKEDRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRSVWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVIVRDIHQTLSPNLTKGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSRGTLEVGGVEHDLTMLRAPRHADALIKALQRAVPFDVFDMNGTFVETAFLDHELRVTQTHSTRFGTITSLYRRNHTN 326
            MATLQTMRYRYTYGRGLHINLGAWWTALAWVTCGLSWAFMLPPQGKPLRVRCTLCTTFARVASTRNNPDSLVTSQSTLTLAAELREELLSLVNIPPEIKEDRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRSVWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVIVRDIHQTLSPNLTKGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSRGTLEVGGVEHDLTMLRAPRHADALIKALQRAVPFDVFDMNGTFVETAFLDHELRVTQTHSTRFGTITSLYRRNHTN
Sbjct:    1 MATLQTMRYRYTYGRGLHINLGAWWTALAWVTCGLSWAFMLPPQGKPLRVRCTLCTTFARVASTRNNPDSLVTSQSTLTLAAELREELLSLVNIPPEIKEDRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRSVWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVIVRDIHQTLSPNLTKGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSRGTLEVGGVEHDLTMLRAPRHADALIKALQRAVPFDVFDMNGTFVETAFLDHELRVTQTHSTRFGTITSLYRRNHTN 326          
BLAST of EWM22470.1 vs. NCBI_GenBank
Match: gi|1210531045|dbj|GAX10146.1| (hypothetical protein FisN_3Lh341 [Fistulifera solaris])

HSP 1 Score: 76.6406 bits (187), Expect = 1.980e-12
Identity = 71/299 (23.75%), Postives = 123/299 (41.14%), Query Frame = 0
Query:   29 AWVTCGLSWAFMLPPQGKPLRVRCTLCTTFARVASTRNNPDSLVTSQSTLTLAAELREELLSLVNIPPEI--KEDRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRSVWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVIVRDIHQTLSPNLTKGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSRGTLEVGGVEHDLTMLRA---PRHADALIKALQRAVPFDVFDMNGTFVETAFLDHELRVTQTHSTRFGTITSLYRR 322
            A+V  G S    L PQ        T+   F      +N  D L  S       A+ +E+LL L+   P +  KE+ +    + ++ +V  L+  Y P QTL F+NL+LQG W  ++++                           +L G                  P P +  +R++ Q +  +  +G ++N   W+     DG    +GT TV   Y++N    + +   EH L   +    P+   AL+  L RA+P ++FD     ++T +LD +LR+ +    R   +  ++ R
Sbjct:   19 AFVQLGRSSQSSLSPQNA-----ATIGPGFGVTVEKKNAVDGLTLS------VAQSKEKLLDLL---PRMTGKEEEF----RTVEALVNNLEANYQPAQTLDFLNLVLQGEWQLLFST---------------------------NLSGT-----------------PNPAKFRLRELFQRIECHKLEGKLINEATWDLAEQGDGHFECSGTFTVDCSYKINQGARMILNLDEHILKPAKGTKIPKDVPALVGLLHRAMPKEMFDPADHAIDTTYLDGDLRIARHTGPRLEGVRDIFIR 255          
BLAST of EWM22470.1 vs. NCBI_GenBank
Match: gi|1210524986|dbj|GAX16178.1| (hypothetical protein FisN_3Hh341 [Fistulifera solaris])

HSP 1 Score: 74.7146 bits (182), Expect = 8.876e-12
Identity = 61/252 (24.21%), Postives = 112/252 (44.44%), Query Frame = 0
Query:   76 STLTLAAELREELLSLVNIPPEI--KEDRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRSVWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVIVRDIHQTLSPNLTKGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSRGTLEVGGVEHDLTMLRA---PRHADALIKALQRAVPFDVFDMNGTFVETAFLDHELRVTQTHSTRFGTITSLYRR 322
            STL++A + +E+LL L+   P +  KE+ +  +    + +V  L+  Y P QTL F+NL+LQG W  ++++                           +L G                  P P +  +R++ Q +  +  +G ++N   W+     DG+   +GT TV   Y++N    + +   EH L   +    P+   AL+  L RA+P ++FD     ++T +LD +LR+ +    R   +  ++ R
Sbjct:   54 STLSVA-QSKEKLLDLL---PRMTGKEEEFRTV----EALVNNLEANYQPAQTLDFLNLILQGEWQLLFST---------------------------NLSGT-----------------PNPAKFRLRELFQRIERHKLEGKLINEATWDLAEQGDGNFECSGTFTVDCSYKINQGARMILSLDEHILKPAKGTKIPKDVPALVGLLHRAMPKEMFDPADHAIDTTYLDGDLRIVRHTGPRLEGVRDIFIR 253          
BLAST of EWM22470.1 vs. NCBI_GenBank
Match: gi|219124851|ref|XP_002182708.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406054|gb|EEC45995.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 73.9442 bits (180), Expect = 2.116e-11
Identity = 70/288 (24.31%), Postives = 117/288 (40.62%), Query Frame = 0
Query:   42 PPQGKPLRVRCTLCTT--FARVASTRNNPDSLVTSQSTLTLAAELREELLSLVNIPPEI--KEDRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRSVWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVIVRDIHQTLSPNLTKGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSRGTLEVGGVEHDLTMLRA---PRHADALIKALQRAVPFDVFDMNGTFVETAFLDHELRVTQTHSTRFGTITSLYRR 322
            PP    LR      T+  F +   T+N       ++S    AAE++ ELL L+   P +  +ED +    +R++ +V  L+  Y P QTL F+NL +QG W  ++++                           +L G                  P P +  +R++ Q +  N   G V N   W+     D     TGT +V+  Y +N    + V   +H L   R    P+    L+  L RA+P  +FD +   ++T +LD +LR+ +    R      ++ R
Sbjct:   39 PPLDPTLRSAVDAFTSKGFEKRDDTKNENQGEFANKS----AAEIKGELLELL---PSMTGQEDEF----RRVEELVNALEARYQPAQTLTFLNLAMQGSWQLLFST---------------------------NLSG-----------------TPNPAKFRLRELTQRIECNNLDGVVTNQALWDLAEAGDAAFDATGTFSVKCNYSINQGARMIVDLEDHLLQPARGSAIPQDVQGLVGYLHRAMPKTLFDPSDHAMDTTYLDVDLRIVRYTGARLEGSRDIFMR 271          
BLAST of EWM22470.1 vs. NCBI_GenBank
Match: gi|298710075|emb|CBJ31791.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.855 bits (159), Expect = 7.115e-9
Identity = 60/257 (23.35%), Postives = 98/257 (38.13%), Query Frame = 0
Query:   73 TSQSTLTLAAELREELLSLVNIP---PEIKEDRYEAIAQRIDFVVGQLKETYVPPQTLPFMNLLLQGCWLNIYNSWTVRRSVWEKRDSSMDAEEEEDEDDFLDLLGPVEEDDVAAGANKRPLHLPTPTQVIVRDIHQTLSPNLT-KGAVVNSVDWECTAGEDGDKGLTGTLTVRGGYEVNSRGTLEVGGVEHDLTMLRAPRHADALIKALQRAVPFDVFDMNGTFVETAFLDHELRVTQTHSTRFGTITSLYRRNHT 325
            T++  +    E + ELL  V  P   P  +  R E    R+ ++V  L+ TY P  T+ F N   QG W   Y S  +                                             +P   ++      Q + P    KG + N + W        D+G+ G L V   Y  + RG +     +H L     PR    L++ L+RA+P+++FD +   +ET FLD  LR+ +    +F  + +++ R  T
Sbjct:   28 TTRKQVGSIEEAKTELLGRVGFPTEHPGAERPRLEE--ARVGYLVEVLEGTYKPIHTVGFFNFAAQGEWDLAYTSAAM---------------------------------------------VPIGPRLTAHQQFQRIEPGEGLKGNLTNIITWTLK-----DEGIDGRLEVMCDYSFDPRGRMNTSLRKHLLLPDGMPRDPQELVRVLRRAMPYELFDPDDHAMETTFLDDTLRIVKHRGPKFEGLVNIFARRAT 232          
The following BLAST results are available for this feature:
BLAST of EWM22470.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585102976|gb|EWM22470.1|0.000e+0100.00hypothetical protein Naga_100011g35 [Nannochlorops... [more]
gi|1210531045|dbj|GAX10146.1|1.980e-1223.75hypothetical protein FisN_3Lh341 [Fistulifera sola... [more]
gi|1210524986|dbj|GAX16178.1|8.876e-1224.21hypothetical protein FisN_3Hh341 [Fistulifera sola... [more]
gi|219124851|ref|XP_002182708.1|2.116e-1124.31predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|298710075|emb|CBJ31791.1|7.115e-923.35conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8223rna8223Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications