EWM22443.1, cds8192 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|585102949|gb|EWM22443.1| (Tic22-like protein [Nannochloropsis gaditana]) HSP 1 Score: 797.349 bits (2058), Expect = 0.000e+0 Identity = 386/386 (100.00%), Postives = 386/386 (100.00%), Query Frame = 0
Query: 1 MIHALDRMARCRGSGASFMLLVLLLVEVLHGVCVLAFQPGSSGPFAHANGVHHRRSTRCASEGDKGETRSACGREEGQTSRTVSAWGTLKTKLSFGVENMGKLTFGTGAAIVAGFGAPQTVDVIKGVKEGRNDVGTALQRIVRPPSAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNGNHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHGAAPGEVKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVEAQLRVKGGKARPIRAS 386
MIHALDRMARCRGSGASFMLLVLLLVEVLHGVCVLAFQPGSSGPFAHANGVHHRRSTRCASEGDKGETRSACGREEGQTSRTVSAWGTLKTKLSFGVENMGKLTFGTGAAIVAGFGAPQTVDVIKGVKEGRNDVGTALQRIVRPPSAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNGNHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHGAAPGEVKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVEAQLRVKGGKARPIRAS
Sbjct: 1 MIHALDRMARCRGSGASFMLLVLLLVEVLHGVCVLAFQPGSSGPFAHANGVHHRRSTRCASEGDKGETRSACGREEGQTSRTVSAWGTLKTKLSFGVENMGKLTFGTGAAIVAGFGAPQTVDVIKGVKEGRNDVGTALQRIVRPPSAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNGNHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHGAAPGEVKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVEAQLRVKGGKARPIRAS 386
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|546315296|ref|XP_005715824.1| (unnamed protein product [Chondrus crispus] >gi|507112319|emb|CDF36005.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 125.176 bits (313), Expect = 5.519e-30 Identity = 82/237 (34.60%), Postives = 126/237 (53.16%), Query Frame = 0
Query: 155 FSRRTLKEKLASVPCFLVCNQQGSPYLVPLE-TGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDR-STAGKHGAAPGEVKTLDFLRVVEWMLNEPE-QTRLVGFHASTQAQEYVEAQLRVKGGKAR 381
FS++T+ EKL+ VP F V N G PYL ++ +G +G++F DA ML+ M +NP +DARV +MGLDK E+V+++P+ +G +VF+F P +Q+K A G ++ K R R+GV G+PVF L + KG E V P+F + EDL AW + + K V + L +++ M ++ E + R +GF A + EYV + G+AR
Sbjct: 22 FSKKTVSEKLSQVPVFAVTNASGQPYLANMDGSGSQIGLIFFSHHDALNMLKDMKKNPGASDARVYIMGLDKAYEMVKAKPQPSGIRGAAGEELTMVFRFFPDSKQVKAAEGLQR------------KLR---RRRGVE--GIPVFVAKGLTLRKGSENVVPLFLTKEDLDSAWSKLRDSNKDLPNNASVVVGNLLYIIQQMESDGEPELRNLGFFAPKASVEYVTKEQAGPTGQAR 241
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|544212257|ref|XP_005534848.1| (similar to chloroplast inner membrane protein Tic22 [Cyanidioschyzon merolae strain 10D] >gi|449016839|dbj|BAM80241.1| similar to chloroplast inner membrane protein Tic22 [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 116.701 bits (291), Expect = 7.082e-26 Identity = 82/238 (34.45%), Postives = 125/238 (52.52%), Query Frame = 0
Query: 155 FSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNP--QTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWD--RSTAGKHGAAPGEVKTLDFLRVVEWM---------LNEPE--QTRLVGFHASTQAQEYVE 370
+SR+TL EKLA VP F V N+ G P+L +E G VG++F DP DA +ML+ + ++ + DAR+ +MGLD+ E+V+S+P+ +G +VF+F P+ QQL+ A R V K K+P VR G+P F L + KG+E V P+F DL AW+ R + P E++ D + V+ + LNE E R V F S+++ E+++
Sbjct: 127 YSRKTLSEKLAQVPVFAVTNESGQPFLAAMERGLQVGLIFFDPDDAIKMLEDLKRSSGKEAEDARIFIMGLDRAFEMVKSKPQPSGLRGPRGDELKMVFRFYPNQQQLEYA---RTVAKKT---KQPT----------VR--GVPCFVAKGLTLRKGKEFVIPIFLDKRDLDEAWNRLRQELAELPKQP-EIEVGDLIEVILRLEEAAKNPKSLNETELQDLRRVAFFPSSKSVEFMK 345
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|298711744|emb|CBJ49281.1| (Tic22-like [Ectocarpus siliculosus]) HSP 1 Score: 113.235 bits (282), Expect = 2.317e-24 Identity = 91/296 (30.74%), Postives = 144/296 (48.65%), Query Frame = 0
Query: 86 WGTLKTKLSFGVENMGKLTFGTGAAIVAGFGAPQTVDVIKGVKEGRNDVGTALQRIVRPPSAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGF-DVGVVFLDPADAEEMLQSMVQ-NPQTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHGAAPGE--VKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVE 370
W + L+ G ++ TF GA ++G A DV + R+ + SAEA L+PF +RT++EKLA++P F+V N++GSPYL P E G + V F + DA+EML MVQ + +AR+LV+ ++K +V++ P+ G + + F+ P + + A R++G LD P N +PVFY L + + +VKP+F DL AW ++ A + P E VK + V+ M E + GF AST+ E+++
Sbjct: 100 WAGARRSLARGAASLA--TFTVGATALSGMSA----DVQHRLN-SRDGAAVVVSIPAAMESAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTGYQNDEGVDERMDFKLEPDMHSFQKA---RRLG----LDVSP----------AAANIDVPVFYVEGLEVKRDGGLVKPLFMDPADLVEAWKKA-AASNPDMPAEPTVKVFNMPDVIVAMELTDEFNQF-GFFASTEGAEFIK 369
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|162606048|ref|XP_001713539.1| (Tic22 [Guillardia theta] >gi|13794459|gb|AAK39834.1|AF165818_42 Tic22 (nucleomorph) [Guillardia theta]) HSP 1 Score: 100.138 bits (248), Expect = 3.034e-20 Identity = 57/226 (25.22%), Postives = 108/226 (47.79%), Query Frame = 0
Query: 155 FSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWD-RSTAGKHGAAPGEVKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVEAQ 372
+S + L +K+ +P F V N G PYL G +G++F DA E+L++M +N Q+ DAR+ +MG DK ++V S +G + ++F+F P +Q+ + K+R G+P+FY ++I +G + + P+FFS+ED YAW+ +K +D + ++ + + + GF ++++ E++ +
Sbjct: 82 YSEKNLHQKMTQIPVFAVTNGTGQPYLANTSNGDQIGLIFFSHEDALELLKNMKKNHQSLDARITIMGFDKAYKMVSSGNSSSGLKDNYGQDLKMIFKFYPDQKQI------KNANGIINNINIFSKFR-----------GIPLFYNESVKINRGNDEITPLFFSLEDFNYAWELMKVRNPDQPVKPNIKVIDLIEMLSLIDSGNIEFSKFGFFPNSKSLEFLNKE 290
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|545712916|ref|XP_005708762.1| (chloroplast inner membrane import protein Tic22 [Galdieria sulphuraria] >gi|452825244|gb|EME32242.1| chloroplast inner membrane import protein Tic22 [Galdieria sulphuraria]) HSP 1 Score: 99.7525 bits (247), Expect = 5.223e-20 Identity = 98/338 (28.99%), Postives = 145/338 (42.90%), Query Frame = 0
Query: 44 PFAHANGVHHRRSTRCASEGDKGETRSACGREEGQTSRTVSAWGTLKTKLSFGVENMGKLTFGTGAAIVAGFGAPQTVDVIKGVKEGRNDVGTALQRIVRPPSAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDV---GVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDR-STAGKHGAAPGEVKTLDFLRVV-EWMLNEPEQTRLVGFHASTQAQEYV 369
PF +G+ RRS C S TRS C S V+ ++ + ++ KLT A V F V ++ G N +GT + P A LK ++ LK KL+ VP F V N G PYLV E G D G +F P DA M+ + Q T D ++ V+GLDK E+V + P +G M+ F P +Q++ A + +L + K F G+PVF L + KG E PVF +DL AW R + K ++ D +++ E + E+ R +GF AS ++ E++
Sbjct: 10 PFV--SGLKQRRSKICNSSNASYLTRSPCSVRWNLIS-CVNCKASVDNRRV--TKDNSKLTLKVIAMSVLSF-----VQLLSGQISSPNHLGTQMSSFQTQPVLAA-GLK--VKKNLKSKLSQVPVFAVTNSDGQPYLV--EDGNDKVQKGYIFFSPEDAGRMMTKVKQANGTEDIQIHVIGLDKAYEMVSNPPTSSGLKDEEGRELMMTFLLHPDSEQVQKA--------RELLKREKKKPAFD---------GIPVFVARGLMLRKGDESNVPVFLDKDDLELAWKRLRESDKSLPQHPVIEIADLFQLLKEIEKGDKEELRSLGFFASRKSIEWI 315
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|330038333|ref|XP_003239569.1| (translocator of the inner chloroplast membrane [Cryptomonas paramecium] >gi|327206493|gb|AEA38671.1| translocator of the inner chloroplast membrane (nucleomorph) [Cryptomonas paramecium]) HSP 1 Score: 98.9821 bits (245), Expect = 6.197e-20 Identity = 65/228 (28.51%), Postives = 111/228 (48.68%), Query Frame = 0
Query: 150 FSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRR---NGNHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDR--STAGKHGAAPGEVKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVEAQ 372
FS FS + +KL+ +P F + N G PYL +G++F DA +L +M Q +DAR+ +MGLD+ +V ++ + N + +F+F P +Q+KNA+ +K F + +R+ +PVF L + KG++ + PVFFS EDL W + S P V +D L++++ M N+ + GF S + E+++ +
Sbjct: 81 FSHARFSSKNYYQKLSQIPVFAITNSSGQPYLTTGPEKEQIGLIFFSHEDALALLTAMKNTHQVSDARIYIMGLDRAYRMVTADKTKNQLNQDFKTIFRFYPDQKQVKNASLI------------VNKLNF---YKTIRD--IPVFVADGLVVKKGKDSMTPVFFSKEDLEKTWKKMISENPDINVKPT-VLVVDLLKILKAMENDEKIFSKFGFFPSQKNIEFIKKE 290
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|873240559|emb|CEL93296.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 90.8929 bits (224), Expect = 4.156e-17 Identity = 73/245 (29.80%), Postives = 110/245 (44.90%), Query Frame = 0
Query: 153 KPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGFDVGVVFLDPADAEEMLQSMVQNP-QTADARVLVMGLDKGLELV-QSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHGAAPG-EVKTLDFLRVVEWMLNEPEQTRLV---GFHASTQAQEYVEAQLRVKGGKARPIR 384
K FS R + E+L+SVP FL+ N PYL + G ++F DP +A ML MVQ ADAR+ V+ L+K ++EPRR G ++ F+F P Q++NA + G R +PVF L + K + + P+F +EDL AW+R + P +V + L V +L+ Q + G S++A ++V+ KAR IR
Sbjct: 66 KKFSSRPMDERLSSVPVFLITNSYALPYLTQVRPGEQTALMFTDPEEANTMLNEMVQTAGPGADARLFVISLEKAWAYARRAEPRRTGIVGEDGKEAVMTFKFHPP--QVENAGNY-------------------VTLLGRRTKMIPVFEATGLDVTKNGDKLCPLFMDLEDLEAAWERMHRARPDTPPKPKVSVYNLLDV---LLHRERQANGLGPWGIVPSSKALDFVKKNRSGGTRKARMIR 286
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|545705607|ref|XP_005705123.1| (chloroplast inner membrane import protein Tic22 [Galdieria sulphuraria] >gi|452821574|gb|EME28603.1| chloroplast inner membrane import protein Tic22 [Galdieria sulphuraria]) HSP 1 Score: 90.1225 bits (222), Expect = 1.700e-16 Identity = 73/242 (30.17%), Postives = 111/242 (45.87%), Query Frame = 0
Query: 135 GTALQRIVRPPSAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVP-LETGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGL---PVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHGAAP--GEVKTLDFLRVVEWML--NEPEQTRLVGFHA 361
G+ ++ P A + S K +R LKE+ +V ++V NQ G P+L +E+ VG+ F ADA ML M Q AR+ + LDK ++V ++P +G + +VF+FCP V Q++ F RQ +N L PVF PDL + K E + P F EDL +W + H P +++ +D L V+E M P+ +L GF+A
Sbjct: 97 GSNANNVLEPVIASSLS-KRRARELLKERTKNVKVYMVANQAGQPFLAEGVESNTQVGLFFFTAADASMMLMQMSQG-AGGSARIEAISLDKAYDMVTAKPTPSGLKDTKGRDLKVVFRFCPEVYQVR------------------------FYRQLAKNKSLRSVPVFVAPDLVLEKNNENLIPAFLDKEDLEKSW-KELKKTHPELPLRPKIEAVDLLDVLEEMEKGTNPDIYQL-GFYA 310
BLAST of EWM22443.1 vs. NCBI_GenBank
Match: gi|1189384468|gb|OSX71701.1| (hypothetical protein BU14_0510s0017 [Porphyra umbilicalis]) HSP 1 Score: 88.5817 bits (218), Expect = 3.792e-16 Identity = 58/162 (35.80%), Postives = 82/162 (50.62%), Query Frame = 0
Query: 163 KLASVPCFLVCNQQGSPYLVPLE-TGFDVGVVFLDPADAEEMLQSMVQNPQTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDL 316
KLA VP F V N G PYL ++ G VG++F +A M M ++P TADARV +MGLDK E+V+++P +G +VF+F P +Q+ +A +L P G AG+PVF P L + K E V P+F + ED+
Sbjct: 123 KLAQVPVFAVTNAGGQPYLANVDGAGTQVGLIFFSHEEALSMQADMQKSPTTADARVYIMGLDKAYEMVKAKPTPSGIRGPAGEELRMVFRFSPDRKQVGHA--------ARLLRAVPIGG-------GGETAGVPVFAAPGLTLRKAGEPVVPLFLAKEDM 269 The following BLAST results are available for this feature:
BLAST of EWM22443.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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