|
|
Properties
| Property Name | Value |
|---|
| Product | 30s ribosomal protein s1 |
| Orig transcript id | gnl|cribi|Naga_100011g28.3454.mrna |
| Orig protein id | gnl|cribi|Naga_100011g28.3454 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:102928..104914 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8215 ID=rna8215|Name=rna8215|organism=Nannochloropsis gaditana|type=mRNA|length=2675bp
GCACTGGCGATATGCCTCCCTATATGCTTGCACTTACCGCACTCGAACAA
TATCAACAGCGCTTCCGGTAAAAGCGGGCCTCCGCATTTACCTCTGTATA
TATTAGCGGCCCATGGCTGCACTTCAAACGACGAACCCGTTTGAGCTCTT
CTGGCAAGACTTGCCTTTACCTCCCGGAAGCACGCGGCCGCCGCTCTCAG
AGTTTGAAATCGAGTGCCTGATGCGAGACAGAGTGTCCCTGGTTGACGGA
CGTAGCAATCGAATCGTGCATCGCGATGGGATTGTACTCCTGACCTCGCA
TCGCATCATTTGGCATTGCCAAAGTCAGTCTCGCGCCTTGCACGGTCACC
TCTCCCGGGTCGCCGAGGCGCGTACCTCTCGCAACATATTCAAACCCTCC
ACGAGGGTGCATCTATATCTGCAAGGAAAAGTCCAGGACCTAGATAGTCG
GCCAGCGACCAAGATTGAATTTGCACACGGCGGCCGGGACGAGTTTCTAA
AACAAGTGCGTTCGCTGTTAATGATGCGGGATTGGGAGAAGCCCCCCCCG
GTGAAGCTTAGGCTGAGTCCGTGTGCCATCGAAGCTGACGGCAGCACTCC
AGCCAGCATGCCATGTTCCTCCCCCGCCTCCCCTGTCCAGACGGTCGAGC
CCGTCTTCACCACGCGGCTGGCCGGGGTGGGAGGAATTCTGCGCCAGCAG
GAGACCGCGCGTGCCGCACAAGATCGACTCGCCACCGAAGCCTTCGCAGA
CCTGGAGGCGCTCATGAGCAAAGCGCGCGAGGTGGTAGGAGTGATTGAGC
GGTATGCTACGGTGCTGGCATCCAAAGACAAGGGGGAGGGCGAGAAGGGC
GGCTCGGAGGCGGAAGGCGGGACAGGGAGGGAGGACGCGGAGCTGCAGGG
GCTGCTCCTGAACATGGGCATATCCAACCCGGTTACGCGGATCTCCGCCG
GCTCTCTCTACCATCAGGAACTGGCCCGACAGCTAGCCAGGTTCTTGACC
GGGGGAAGCACCTCCGCCGGCGCGCTTGGAAGGAGGAGCCTGCTGTCTGA
GCGCGGGGGCATGATGACCCTCCACGATGTCTTCTGTCTCTTCAACCGAG
CCCGTGGCACCGCCCTGATCTCTCCAGAGGACCTATTGGACGCCTGCGAG
GCTTTGGAGCCGCTGCAGCTGGGCATGCGGCTGCGGCGATTCCCAAGCGG
CGTGAGCGTAGTAGAGGCGATGGACTTCAGCGAGGAGAGGGTGGGCGCGC
GGCTCCGGGCGCTAGCGGAGGCCGAAGCAGATGGCTCCCTGACGGCCCTA
GACGTGGCTACCCACCTTCGCGTGTCCATTGCACTCGCGCAGGAATTCTT
GGGGACGGCGGAAGCCCAGGGCCTGCTCTGTCGAGACCAGAGCGTCCAAG
GCACCCTCTTCTGGCCCAACCGATTCCCCGCGTGGGTGGCGCAGGCGGGC
GAGGGAAACGACAGGGCTGCCTAGGTCGCTCAGGGAGAAGGGTTCAAAGC
AATGGCTAGCAAAGGCGGAGGGCGCCGAGGCCGACTTCGATGACGGCGAC
GCTCTTCTTTCTTTCACACACCAGCGATACCTCTAATCTACGGCTGCTTG
CCTACTCTGTCCTCCACTGACGCCGATGCCGCCGCCTCCTCCTCCTCTTT
CCGCCGTCTGGCAGCGTCCAAGTCATGGAGCATCTCCTTCTTCCGCCCCC
CGTCCGTTTCAAACCCCCATTCCCGGATCCTCTCCATCGCCCGCTTCCCG
CGGCCCCGCGGTTGCAGGCCCTGCCCCTCCTCATACAGCGGCCGTCGCCA
CTCTTCCTCCACAAAACCCCTCCCCGGGGCTGCCTCTGAGCCCGCCACCT
CGTAGCCCCCCAAGAACCAGGAGTAGTCCACGCGCGGCAAAGAGCGGGGC
CTCTCGCCCGTCAGCTTGAGCCGGCGCCTGTCCCTGTCCACCTCCATGGC
CCAGACCCGCAGGCGCATGCCAGGGAAGAATACGTCCTGTGTGAGGGCCC
CCTCGCTGCGCCTCGGATAGTAGATCACGTGCAAGAAGCCCTGCACCTCC
GCGCCCACGTCCACGAATGCCCCGTAGTTTGAGACCTTGGTCACCTCGCC
CCACAGCTCGTCGTCCTCCTCCACCTCCTCCAGGCCCGTGCGGGCCTCCT
GCTCCTCCGCCGTCTCCACCTCGGCCGGCACCAGACTCCCCGTGACGATG
CCCTCGGCGGGACTCAGGTACTTGACGAAGAAGCTGACCGCGTCCCCGGG
CCTCACGTAGTCGCGCGCGTCCAGCACGAAATCCCGATCGCTCAAGTCAC
GCAGGCGCACAAAGCCATCCTTCGTCGCCCCGAAGTCCACGTAGGCCCCG
TGCTCCTTCACCGTTATCACCACCCCCTCGTGCCGGGAGCCTAACTCCAG
CTCTCCCAGCGGGATCTGCCTCTCGCGCTTCGGCCTCTTCACCCATTTGA
AGCCGCTCTCCTGTCGCTCTTTTATCTGCATGAGCTTGAATGCCTTGCGC
ATCTCCTCCAGGTATTCGTCTCGCTGGTCTCGGAATCTAGCCTTGTTGGC
CCGGGCTTGCTTCTTGTTTTTGCCGACCTCCTGAGGGAAGGCGGGCATAG
AGCGCGTAGAAAGTTGAAAGCAATGTTCACTTGTAAGATAAATTAAAGTC
ATACACACAAAGCGTACATTAAAGA back to topprotein sequence of rna8215 >rna8215-protein ID=rna8215-protein|Name=rna8215|organism=Nannochloropsis gaditana|type=polypeptide|length=445bp
MAHIHIARKMLGSRRRSAARTFACCIVALGCVAWSSHAAFISPLHHFGCG
RARGRVHTAVVAERPSVQPTPSIYSAATGHGEEESEAPRLNSDVEGRRGS
PRELERKKKHFDFLKEVGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQ
IKERQESGFKWVKRPKRERQIPLGELELGSRHEGVVITVKEHGAYVDFGA
TKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVP
AEVETAEEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHV
IYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPRVD
YSWFLGGYEVAGSEAAPGRGFVEEEWRRPLYEEGQGLQPRGRGKRAMERI
REWGFETDGGRKKEMLHDLDAARRRKEEEEAAASASVEDRVGKQP back to topmRNA from alignment at KK037248.1:102928..104914- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8215 ID=rna8215|Name=rna8215|organism=Nannochloropsis gaditana|type=mRNA|length=1987bp|location=Sequence derived from alignment at KK037248.1:102928..104914- (Nannochloropsis gaditana)
CAACGTCCCCATTCCTTTGAGCATCAGAAAGTCGTCCAAAGAAGAGACAT
TACAAGGACGAGTGAGGAAACAATCTGGAATGCGCGTAAAGTCCAGCCTC
CACTCCTTGCTTCACGACCGAGAGCCTGTCCTCTGGCTGCTCCCTCCTCG
CGGCGTTCCACCCCCCTCCTAGCCAGCTCTTCCTCGAGATCATACCCTCC
CACAAGTGGTACCGAGAAGATGAAAAGCTAATCCTCCCATTATTTCTTTT
TTAAAGCCACATTACCCTTGAAGGTGACCGGTGGGGCATAGCGGGCGTAC
GCGTGTGCAAGATTTATACGGAGCTTTCTCGTGAAGTTGAAGACTGTTCG
TCAGCGTGAATGGCCCACATCCACATCGCAAGAAAAATGTTAGGATCAAG
GCGCCGCTCGGCTGCAAGAACGTTTGCCTGCTGTATTGTGGCTTTAGGAT
GCGTTGCGTGGTCGTCACATGCTGCATTTATATCTCCTCTGCACCACTTT
GGCTGTGGGCGCGCTCGAGGCCGGGTACATACCGCGGTCGTAGCGGAACG
TCCGTCAGTGCAGCCCACTCCGTCCATATACTCCGCCGCCACGGGCCACG
GGGAAGAGGAGTCCGAAGCACCACGGTTAAATTCAGACGTAGAAGGGAGA
AGGGGAAGTCCGCGAGAGCTAGAGCGGAAAAAGAAGCATTTCGACTTTCT
GAAGGTACGTGTCGCAAGACAGAGGATGGTACTTCAAATCAAAAATTGTG
ACTGTCCGGTCCAATCGGCGTGAAGCTACAGTAAATCTTTAATGTACGCT
TTGTGTGTATGACTTTAATTTATCTTACAAGTGAACATTGCTTTCAACTT
TCTACGCGCTCTATGCCCGCCTTCCCTCAGGAGGTCGGCAAAAACAAGAA
GCAAGCCCGGGCCAACAAGGCTAGATTCCGAGACCAGCGAGACGAATACC
TGGAGGAGATGCGCAAGGCATTCAAGCTCATGCAGATAAAAGAGCGACAG
GAGAGCGGCTTCAAATGGGTGAAGAGGCCGAAGCGCGAGAGGCAGATCCC
GCTGGGAGAGCTGGAGTTAGGCTCCCGGCACGAGGGGGTGGTGATAACGG
TGAAGGAGCACGGGGCCTACGTGGACTTCGGGGCGACGAAGGATGGCTTT
GTGCGCCTGCGTGACTTGAGCGATCGGGATTTCGTGCTGGACGCGCGCGA
CTACGTGAGGCCCGGGGACGCGGTCAGCTTCTTCGTCAAGTACCTGAGTC
CCGCCGAGGGCATCGTCACGGGGAGTCTGGTGCCGGCCGAGGTGGAGACG
GCGGAGGAGCAGGAGGCCCGCACGGGCCTGGAGGAGGTGGAGGAGGACGA
CGAGCTGTGGGGCGAGGTGACCAAGGTCTCAAACTACGGGGCATTCGTGG
ACGTGGGCGCGGAGGTGCAGGGCTTCTTGCACGTGATCTACTATCCGAGG
CGCAGCGAGGGGGCCCTCACACAGGACGTATTCTTCCCTGGCATGCGCCT
GCGGGTCTGGGCCATGGAGGTGGACAGGGACAGGCGCCGGCTCAAGCTGA
CGGGCGAGAGGCCCCGCTCTTTGCCGCGCGTGGACTACTCCTGGTTCTTG
GGGGGCTACGAGGTGGCGGGCTCAGAGGCAGCCCCGGGGAGGGGTTTTGT
GGAGGAAGAGTGGCGACGGCCGCTGTATGAGGAGGGGCAGGGCCTGCAAC
CGCGGGGCCGCGGGAAGCGGGCGATGGAGAGGATCCGGGAATGGGGGTTT
GAAACGGACGGGGGGCGGAAGAAGGAGATGCTCCATGACTTGGACGCTGC
CAGACGGCGGAAAGAGGAGGAGGAGGCGGCGGCATCGGCGTCAGTGGAGG
ACAGAGTAGGCAAGCAGCCGTAGATTAGAGGTATCGCTGGTGTGTGAAAG
AAAGAAGAGCGTCGCCGTCATCGAAGTCGGCCTCGGCGCCCTCCGCCTTT
GCTAGCCATTGCTTTGAACCCTTCTCCCTGAGCGACC back to topCoding sequence (CDS) from alignment at KK037248.1:102928..104914- >rna8215 ID=rna8215|Name=rna8215|organism=Nannochloropsis gaditana|type=CDS|length=2676bp|location=Sequence derived from alignment at KK037248.1:102928..104914- (Nannochloropsis gaditana)
GAGGTCGGCAAAAACAAGAAGCAAGCCCGGGCCAACAAGGCTAGATTCCG
AGACCAGCGAGACGAATACCTGGAGGAGATGCGCAAGGCATTCAAGCTCA
TGCAGATAAAAGAGCGACAGGAGAGCGGCTTCAAATGGGTGAAGAGGCCG
AAGCGCGAGAGGCAGATCCCGCTGGGAGAGCTGGAGTTAGGCTCCCGGCA
CGAGGGGGTGGTGATAACGGTGAAGGAGCACGGGGCCTACGTGGACTTCG
GGGCGACGAAGGATGGCTTTGTGCGCCTGCGTGACTTGAGCGATCGGGAT
TTCGTGCTGGACGCGCGCGACTACGTGAGGCCCGGGGACGCGGTCAGCTT
CTTCGTCAAGTACCTGAGTCCCGCCGAGGGCATCGTCACGGGGAGTCTGG
TGCCGGCCGAGGTGGAGACGGCGGAGGAGCAGGAGGCCCGCACGGGCCTG
GAGGAGGTGGAGGAGGACGACGAGCTGTGGGGCGAGGTGACCAAGGTCTC
AAACTACGGGGCATTCGTGGACGTGGGCGCGGAGGTGCAGGGCTTCTTGC
ACGTGATCTACTATCCGAGGCGCAGCGAGGGGGCCCTCACACAGGACGTA
TTCTTCCCTGGCATGCGCCTGCGGGTCTGGGCCATGGAGGTGGACAGGGA
CAGGCGCCGGCTCAAGCTGACGGGCGAGAGGCCCCGCTCTTTGCCGCGCG
TGGACTACTCCTGGTTCTTGGGGGGCTACGAGGTGGCGGGCTCAGAGGCA
GCCCCGGGGAGGGGTTTTGTGGAGGAAGAGTGGCGACGGCCGCTGTATGA
GGAGGGGCAGGGCCTGCAACCGCGGGGCCGCGGGAAGCGGGCGATGGAGA
GGATCCGGGAATGGGGGTTTGAAACGGACGGGGGGCGGAAGAAGGAGATG
CTCCATGACTTGGACGCTGCCAGACGGCGGAAAGAGGAGGAGGAGGCGGC
GGCATCGGCGTCAGTGGAGGACAGAGTAGGCAAGCAGCCGTAGATGGCCC
ACATCCACATCGCAAGAAAAATGTTAGGATCAAGGCGCCGCTCGGCTGCA
AGAACGTTTGCCTGCTGTATTGTGGCTTTAGGATGCGTTGCGTGGTCGTC
ACATGCTGCATTTATATCTCCTCTGCACCACTTTGGCTGTGGGCGCGCTC
GAGGCCGGGTACATACCGCGGTCGTAGCGGAACGTCCGTCAGTGCAGCCC
ACTCCGTCCATATACTCCGCCGCCACGGGCCACGGGGAAGAGGAGTCCGA
AGCACCACGGTTAAATTCAGACGTAGAAGGGAGAAGGGGAAGTCCGCGAG
AGCTAGAGCGGAAAAAGAAGCATTTCGACTTTCTGAAGGAGGTCGGCAAA
AACAAGAAGCAAGCCCGGGCCAACAAGGCTAGATTCCGAGACCAGCGAGA
CGAATACCTGGAGGAGATGCGCAAGGCATTCAAGCTCATGCAGATAAAAG
AGCGACAGGAGAGCGGCTTCAAATGGGTGAAGAGGCCGAAGCGCGAGAGG
CAGATCCCGCTGGGAGAGCTGGAGTTAGGCTCCCGGCACGAGGGGGTGGT
GATAACGGTGAAGGAGCACGGGGCCTACGTGGACTTCGGGGCGACGAAGG
ATGGCTTTGTGCGCCTGCGTGACTTGAGCGATCGGGATTTCGTGCTGGAC
GCGCGCGACTACGTGAGGCCCGGGGACGCGGTCAGCTTCTTCGTCAAGTA
CCTGAGTCCCGCCGAGGGCATCGTCACGGGGAGTCTGGTGCCGGCCGAGG
TGGAGACGGCGGAGGAGCAGGAGGCCCGCACGGGCCTGGAGGAGGTGGAG
GAGGACGACGAGCTGTGGGGCGAGGTGACCAAGGTCTCAAACTACGGGGC
ATTCGTGGACGTGGGCGCGGAGGTGCAGGGCTTCTTGCACGTGATCTACT
ATCCGAGGCGCAGCGAGGGGGCCCTCACACAGGACGTATTCTTCCCTGGC
ATGCGCCTGCGGGTCTGGGCCATGGAGGTGGACAGGGACAGGCGCCGGCT
CAAGCTGACGGGCGAGAGGCCCCGCTCTTTGCCGCGCGTGGACTACTCCT
GGTTCTTGGGGGGCTACGAGGTGGCGGGCTCAGAGGCAGCCCCGGGGAGG
GGTTTTGTGGAGGAAGAGTGGCGACGGCCGCTGTATGAGGAGGGGCAGGG
CCTGCAACCGCGGGGCCGCGGGAAGCGGGCGATGGAGAGGATCCGGGAAT
GGGGGTTTGAAACGGACGGGGGGCGGAAGAAGGAGATGCTCCATGACTTG
GACGCTGCCAGACGGCGGAAAGAGGAGGAGGAGGCGGCGGCATCGGCGTC
AGTGGAGGACAGAGTAGGCAAGCAGCCGTAGATGGCCCACATCCACATCG
CAAGAAAAATGTTAGGATCAAGGCGCCGCTCGGCTGCAAGAACGTTTGCC
TGCTGTATTGTGGCTTTAGGATGCGTTGCGTGGTCGTCACATGCTGCATT
TATATCTCCTCTGCACCACTTTGGCTGTGGGCGCGCTCGAGGCCGGGTAC
ATACCGCGGTCGTAGCGGAACGTCCGTCAGTGCAGCCCACTCCGTCCATA
TACTCCGCCGCCACGGGCCACGGGGAAGAGGAGTCCGAAGCACCACGGTT
AAATTCAGACGTAGAAGGGAGAAGGGGAAGTCCGCGAGAGCTAGAGCGGA
AAAAGAAGCATTTCGACTTTCTGAAG back to top
|