EWM22454.1, cds8191 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|585102960|gb|EWM22454.1| (30s ribosomal protein s1 [Nannochloropsis gaditana]) HSP 1 Score: 899.042 bits (2322), Expect = 0.000e+0 Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0 Query: 1 MAHIHIARKMLGSRRRSAARTFACCIVALGCVAWSSHAAFISPLHHFGCGRARGRVHTAVVAERPSVQPTPSIYSAATGHGEEESEAPRLNSDVEGRRGSPRELERKKKHFDFLKEVGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQIKERQESGFKWVKRPKRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEVETAEEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPRVDYSWFLGGYEVAGSEAAPGRGFVEEEWRRPLYEEGQGLQPRGRGKRAMERIREWGFETDGGRKKEMLHDLDAARRRKEEEEAAASASVEDRVGKQP 445 MAHIHIARKMLGSRRRSAARTFACCIVALGCVAWSSHAAFISPLHHFGCGRARGRVHTAVVAERPSVQPTPSIYSAATGHGEEESEAPRLNSDVEGRRGSPRELERKKKHFDFLKEVGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQIKERQESGFKWVKRPKRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEVETAEEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPRVDYSWFLGGYEVAGSEAAPGRGFVEEEWRRPLYEEGQGLQPRGRGKRAMERIREWGFETDGGRKKEMLHDLDAARRRKEEEEAAASASVEDRVGKQP Sbjct: 1 MAHIHIARKMLGSRRRSAARTFACCIVALGCVAWSSHAAFISPLHHFGCGRARGRVHTAVVAERPSVQPTPSIYSAATGHGEEESEAPRLNSDVEGRRGSPRELERKKKHFDFLKEVGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQIKERQESGFKWVKRPKRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEVETAEEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPRVDYSWFLGGYEVAGSEAAPGRGFVEEEWRRPLYEEGQGLQPRGRGKRAMERIREWGFETDGGRKKEMLHDLDAARRRKEEEEAAASASVEDRVGKQP 445
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|1072237763|gb|OEU22490.1| (S1-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 124.79 bits (312), Expect = 2.331e-28 Identity = 83/241 (34.44%), Postives = 135/241 (56.02%), Query Frame = 0 Query: 117 VGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQIKERQESGFKWVKRPK-RERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSP-AEGIVTGSLVPAEVETA--------EEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLP 347 V K + +A ANK + D+ M K FK +Q ++++S V+RP + + PL G G VI++ +GAYVD G DG + + ++ + FV R + PGD V+ + +SP + + L A+VE + ++ E +T L E E DDELWGE+ +V+++GA+V+VGAEV GFLH + +P +GA + G R+RVW ++D ++ R+++T RP++LP Sbjct: 115 VEKGRAKAIANKKKREPIADKKRRMMMK-FKELQQDKKKDSR---VQRPLGFDERAPLTAFFPGMEVTGTVISLIPYGAYVDIGTECDGLLHISQITRKFFVEHPRQVLTPGDEVTVRIHKISPELKKMQLTMLDVADVEVSLVGSDNDDDDSEEKTPLTEFELDDELWGELKRVTDFGAYVEVGAEVDGFLHFMDHPLWEDGAQPFEFMERGQRVRVWVADLDMEKNRIRVTATRPQNLP 351
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|1210524067|dbj|GAX16796.1| (small subunit ribosomal protein S1 [Fistulifera solaris]) HSP 1 Score: 122.479 bits (306), Expect = 7.417e-28 Identity = 80/266 (30.08%), Postives = 144/266 (54.14%), Query Frame = 0 Query: 91 NSDVEGRRGSPRELERKKKHFDFLKEVGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQIKERQESGFKW--VKRP-KRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEV---ETAEE-QEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRR--SEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLP 347 D E + P E + K +D L K + + +++ ++ +K +M +KE+Q + V+RP + + PL L G G+VI++ + GAY+D G DG + + +S FV + + PGD V+ V+ +SP + + S++P ++ ET+++ + R L +++ DDELWGE +++++GA+V+VGAEV FLH + +P S+G+ + G R+R+W ++D ++RR+K+T RP LP Sbjct: 48 TDDDEDQPTQPVEEKIKSSRWDSLNPRVKERLVKAGQERAIVNKKKRESDQTKKRRMMMFVKEQQREKKRASKVQRPLPFDDRTPLTALIPGMEVTGIVISLTKFGAYIDIGTECDGLLHVSQISRDVFVEHPKQILTPGDEVTVRVRSISPEKKKLHLSMLPEDILREETSDDFAKNRIPLVDIQVDDELWGEFKRITDFGAYVEVGAEVDAFLHFMDHPAFGWSKGSHPSEFMKVGDRVRIWVSDLDFEQRRIKVTANRPSYLP 313
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|1210527293|dbj|GAX13928.1| (small subunit ribosomal protein S1 [Fistulifera solaris]) HSP 1 Score: 115.161 bits (287), Expect = 1.998e-25 Identity = 70/217 (32.26%), Postives = 126/217 (58.06%), Query Frame = 0 Query: 140 EEMRKAFKLMQIKERQESGFKW--VKRP-KRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEV---ETAEE-QEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRR--SEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLP 347 ++ +K +M +KE+Q + V+RP + + PL L G G+VI++ + GAY+D G DG + + +S FV + + PGD V V+ ++ + + S++P ++ ET+++ + R L +++ DDELWGE +++++GA+V+VGAEV FLH + +P S+G+ + G R+R+W ++D ++RR+K+T RP LP Sbjct: 73 DQTKKRRMMMFVKEQQREKKRAAKVQRPLPFDDRTPLTALIPGMEVTGIVISLTKFGAYIDIGTECDGLLHVSQISRDVFVEHPKQILTPGDEVMVRVRSINAEKKKLHLSMLPEDILREETSDDFAKNRIALVDMQVDDELWGEFKRITDFGAYVEVGAEVDAFLHFMDHPAFGWSKGSHPTEFMKVGDRVRIWVSDLDFEQRRIKVTANRPPYLP 289
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|299116075|emb|CBN74491.1| (30S ribosomal protein S1 [Ectocarpus siliculosus]) HSP 1 Score: 117.857 bits (294), Expect = 2.339e-25 Identity = 88/250 (35.20%), Postives = 130/250 (52.00%), Query Frame = 0 Query: 108 KKHFDFLKEVGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQI-KERQESGFK---WVKRPKRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLV---PAEVETAEEQEAR-TGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPRV 349 K H D+L E +N++ A A +R++Y ++ + K+ I KER + W R R+ L +L+ G +G V V+ +GA+VD A +DG + ++D+ + F A + V D + VK++ P G + SLV P E + + +V ELWG V +V+N GA+V+VGAEV GFL + P R G V RLRV+A EVDR+ R+KLT +RPRSLPR Sbjct: 102 KAHNDYLDEAQRNREIAAA-------RREKYTKKFYRDKKIYDIVKERGRKAVREATWATRWPRQVTRKLEDLQEGEWIKGKVRNVESYGAWVDVNAERDGLLHVKDMGE-TFTPSAGEVVATKDIIQARVKFVDPVTGKLGLSLVEDGPREGDLPLPPPRPPISVADVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPRGLGAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPRC 343
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|397629230|gb|EJK69266.1| (hypothetical protein THAOC_09487 [Thalassiosira oceanica]) HSP 1 Score: 112.849 bits (281), Expect = 4.429e-24 Identity = 79/241 (32.78%), Postives = 132/241 (54.77%), Query Frame = 0 Query: 122 KQARANKARFRDQRDEYLEEMRKAFKLMQIKERQESGFKWVKRP---KRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEV----------ETAEEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYP--RRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLP 347 K+A+ R + +R+ + R+ + E Q K+V+R +++ L ++E G+ G VI++ + GAY+D G DG + + +S +FV R+Y+ PGD V + P + + +++P EV E +++ R L+E+E DDELWGE+ +V++YGA+V+VG+ +GFLH + +P S GA +D+ G R+RVW ++VD R+KLT RP LP Sbjct: 104 KEAQERAIRNKKRREPAAAKKRRLHSQYKEMESQSKREKYVRRDLPVNSKKRTLLKDIEPGTSLSGKVISLTKFGAYIDVGTEADGLLHVSQISRDEFVEHPRNYLAPGDEAEVRVVRVDPTQKKLQLTMLPEEVLDEENVMKSLEMNPDEDDRIQLDEIEVDDELWGEIRRVTDYGAYVEVGSVTRGFLHFMDHPSWEDSVGAHPRDIMSVGDRVRVWVVDVDGMLNRIKLTANRPTGLP 344
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|1189388002|gb|OSX75041.1| (hypothetical protein BU14_0257s0011 [Porphyra umbilicalis]) HSP 1 Score: 99.3673 bits (246), Expect = 2.329e-19 Identity = 63/139 (45.32%), Postives = 81/139 (58.27%), Query Frame = 0 Query: 173 LGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLV-P-AEVETAEEQEA--RTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHV-IYYPRR 306 L L G R +G V + +HGAYVD GAT DG V LRD+S +FV + D + PGD V +VKY G + SL+ P V T Q A RT L +V + G V +VSN+GA+VDVGA + GF+HV + Y RR Sbjct: 117 LDALVAGQRLDGTVTNLVKHGAYVDVGATTDGLVHLRDMSV-EFVHEPEDILAPGDTVEVYVKYAEEVTGRLALSLLRPRPSVATPLPQAARGRTRLVDVAVGSRVLGTVRRVSNFGAYVDVGAAMDGFVHVSLLYGRR 254
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|935661819|ref|WP_054493886.1| (hypothetical protein [Ardenticatena maritima] >gi|913353223|dbj|GAP64152.1| small subunit ribosomal protein S1 [Ardenticatena maritima]) HSP 1 Score: 89.3521 bits (220), Expect = 3.577e-16 Identity = 58/189 (30.69%), Postives = 100/189 (52.91%), Query Frame = 0 Query: 168 ERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEVETAEEQEARTG---LEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPRVDYSW 353 E + + EL G +G+V + +++GA+VD GA DG V + +L D FV D V GD V+ +VK + ++ +++ ++EA G L ++EE E G VT + ++GAFVD+GAE G +H+ + +DV G ++V + +DR R+R+ L+ PR ++Y++ Sbjct: 71 EITVHMDELTPGMELKGIVRSTQDYGAFVDIGAETDGLVHISELKDG-FVEKVEDVVSEGDEVTVWVKEIDLERKRISLTMIDPNAPRESQREADDGKLRLRDLEEGQEFTGIVTSIVDFGAFVDIGAETDGLVHISELSEERVNRV-EDVVEVGQEVKVRIIGIDRKRKRISLSMREPREA--IEYTF 255
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|873237657|emb|CEL97137.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 89.3521 bits (220), Expect = 3.137e-15 Identity = 59/210 (28.10%), Postives = 111/210 (52.86%), Query Frame = 0 Query: 150 QIKERQESGFKWVKR-PKRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSD--RDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEVETAEEQEA-----------RTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYY--PRRSEG---ALTQDVFFPGMRLR-VWAMEVDRDRRRLKLT 339 Q K+ + ++ VKR +++ +P+ +G R G VI +K+HGA++D G T+ + +RD+++ ++ D + PG ++ VKY +P++G++ +L P +V+ + Q A R ++ ++ + G VT+V+ G FVD+GA+V ++H + P R G T D F G + ++ VD+ R RL++T Sbjct: 146 QAKDGERQKWRKVKRLAPQKKLLPISMFRVGERIRGRVIQLKQHGAWIDIGCTQKALLHIRDMAEEGEGWISSPTDKLVPGQELNVTVKYAAPSQGVLAVTLRPNDVQRLQSQPAVVPEQAGPAERRRPVDSFRLEERVDGVVTRVTEKGCFVDIGADVDAWMHTMDVEDPYRDRGRNFKATSDFFHVGQHFQGLYIKTVDKVRNRLRVT 355
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|1212019598|ref|WP_088569892.1| (hypothetical protein [Thermoflexus hugenholtzii] >gi|1210035547|emb|SNB51040.1| Ribosomal protein S1 [Thermoflexus hugenholtzii JAD2]) HSP 1 Score: 81.6481 bits (200), Expect = 2.030e-13 Identity = 57/178 (32.02%), Postives = 92/178 (51.69%), Query Frame = 0 Query: 170 QIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEVETAEEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGAL-TQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSL 346 ++PL L + EG+V V GA+VD G+ GF+ + L+ + +L D ++PGD V +VK ++ +G+++ +L+ + A G ++ E G VT+V G FVD+ A V+GF+ R EG + +F PG +RVW + R RRL+LT P S+ Sbjct: 19 RVPLRSLRPKMQVEGLVTAVTPAGAFVDIGSEIPGFIHISQLAPQP-ILRVSDVLKPGDRVIAWVKQVNRKKGLLSLTLI---------RPASYGWGQLRPGREFTGRVTRVEPDGLFVDIDAPVEGFVPASQI--RKEGRVDPTGLFHPGDEVRVWVVSASRRERRLRLTMIPPPSV 184 The following BLAST results are available for this feature:
BLAST of EWM22454.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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