EWM22454.1, cds8191 (CDS) Nannochloropsis gaditana

Overview
NameEWM22454.1
Unique Namecds8191
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:104211..104555 -
Alignment locationKK037248.1:103042..104034 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22454.1
Product30s ribosomal protein s1
Orig transcript idgnl|cribi|Naga_100011g28.3454.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:104211..104555 -
KK037248.1supercontigKK037248.1:103042..104034 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR003029Rbsml_prot_S1_RNA-bd_dom
IPR022967S1_dom
Homology
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|585102960|gb|EWM22454.1| (30s ribosomal protein s1 [Nannochloropsis gaditana])

HSP 1 Score: 899.042 bits (2322), Expect = 0.000e+0
Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0
Query:    1 MAHIHIARKMLGSRRRSAARTFACCIVALGCVAWSSHAAFISPLHHFGCGRARGRVHTAVVAERPSVQPTPSIYSAATGHGEEESEAPRLNSDVEGRRGSPRELERKKKHFDFLKEVGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQIKERQESGFKWVKRPKRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEVETAEEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPRVDYSWFLGGYEVAGSEAAPGRGFVEEEWRRPLYEEGQGLQPRGRGKRAMERIREWGFETDGGRKKEMLHDLDAARRRKEEEEAAASASVEDRVGKQP 445
            MAHIHIARKMLGSRRRSAARTFACCIVALGCVAWSSHAAFISPLHHFGCGRARGRVHTAVVAERPSVQPTPSIYSAATGHGEEESEAPRLNSDVEGRRGSPRELERKKKHFDFLKEVGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQIKERQESGFKWVKRPKRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEVETAEEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPRVDYSWFLGGYEVAGSEAAPGRGFVEEEWRRPLYEEGQGLQPRGRGKRAMERIREWGFETDGGRKKEMLHDLDAARRRKEEEEAAASASVEDRVGKQP
Sbjct:    1 MAHIHIARKMLGSRRRSAARTFACCIVALGCVAWSSHAAFISPLHHFGCGRARGRVHTAVVAERPSVQPTPSIYSAATGHGEEESEAPRLNSDVEGRRGSPRELERKKKHFDFLKEVGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQIKERQESGFKWVKRPKRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEVETAEEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPRVDYSWFLGGYEVAGSEAAPGRGFVEEEWRRPLYEEGQGLQPRGRGKRAMERIREWGFETDGGRKKEMLHDLDAARRRKEEEEAAASASVEDRVGKQP 445          
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|1072237763|gb|OEU22490.1| (S1-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 124.79 bits (312), Expect = 2.331e-28
Identity = 83/241 (34.44%), Postives = 135/241 (56.02%), Query Frame = 0
Query:  117 VGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQIKERQESGFKWVKRPK-RERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSP-AEGIVTGSLVPAEVETA--------EEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLP 347
            V K + +A ANK +     D+    M K FK +Q  ++++S    V+RP   + + PL     G    G VI++  +GAYVD G   DG + +  ++ + FV   R  + PGD V+  +  +SP  + +    L  A+VE +        ++ E +T L E E DDELWGE+ +V+++GA+V+VGAEV GFLH + +P   +GA   +    G R+RVW  ++D ++ R+++T  RP++LP
Sbjct:  115 VEKGRAKAIANKKKREPIADKKRRMMMK-FKELQQDKKKDSR---VQRPLGFDERAPLTAFFPGMEVTGTVISLIPYGAYVDIGTECDGLLHISQITRKFFVEHPRQVLTPGDEVTVRIHKISPELKKMQLTMLDVADVEVSLVGSDNDDDDSEEKTPLTEFELDDELWGELKRVTDFGAYVEVGAEVDGFLHFMDHPLWEDGAQPFEFMERGQRVRVWVADLDMEKNRIRVTATRPQNLP 351          
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|1210524067|dbj|GAX16796.1| (small subunit ribosomal protein S1 [Fistulifera solaris])

HSP 1 Score: 122.479 bits (306), Expect = 7.417e-28
Identity = 80/266 (30.08%), Postives = 144/266 (54.14%), Query Frame = 0
Query:   91 NSDVEGRRGSPRELERKKKHFDFLKEVGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQIKERQESGFKW--VKRP-KRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEV---ETAEE-QEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRR--SEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLP 347
              D E +   P E + K   +D L    K +      +    +++    ++ +K   +M +KE+Q    +   V+RP   + + PL  L  G    G+VI++ + GAY+D G   DG + +  +S   FV   +  + PGD V+  V+ +SP +  +  S++P ++   ET+++  + R  L +++ DDELWGE  +++++GA+V+VGAEV  FLH + +P    S+G+   +    G R+R+W  ++D ++RR+K+T  RP  LP
Sbjct:   48 TDDDEDQPTQPVEEKIKSSRWDSLNPRVKERLVKAGQERAIVNKKKRESDQTKKRRMMMFVKEQQREKKRASKVQRPLPFDDRTPLTALIPGMEVTGIVISLTKFGAYIDIGTECDGLLHVSQISRDVFVEHPKQILTPGDEVTVRVRSISPEKKKLHLSMLPEDILREETSDDFAKNRIPLVDIQVDDELWGEFKRITDFGAYVEVGAEVDAFLHFMDHPAFGWSKGSHPSEFMKVGDRVRIWVSDLDFEQRRIKVTANRPSYLP 313          
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|1210527293|dbj|GAX13928.1| (small subunit ribosomal protein S1 [Fistulifera solaris])

HSP 1 Score: 115.161 bits (287), Expect = 1.998e-25
Identity = 70/217 (32.26%), Postives = 126/217 (58.06%), Query Frame = 0
Query:  140 EEMRKAFKLMQIKERQESGFKW--VKRP-KRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEV---ETAEE-QEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRR--SEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLP 347
            ++ +K   +M +KE+Q    +   V+RP   + + PL  L  G    G+VI++ + GAY+D G   DG + +  +S   FV   +  + PGD V   V+ ++  +  +  S++P ++   ET+++  + R  L +++ DDELWGE  +++++GA+V+VGAEV  FLH + +P    S+G+   +    G R+R+W  ++D ++RR+K+T  RP  LP
Sbjct:   73 DQTKKRRMMMFVKEQQREKKRAAKVQRPLPFDDRTPLTALIPGMEVTGIVISLTKFGAYIDIGTECDGLLHVSQISRDVFVEHPKQILTPGDEVMVRVRSINAEKKKLHLSMLPEDILREETSDDFAKNRIALVDMQVDDELWGEFKRITDFGAYVEVGAEVDAFLHFMDHPAFGWSKGSHPTEFMKVGDRVRIWVSDLDFEQRRIKVTANRPPYLP 289          
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|299116075|emb|CBN74491.1| (30S ribosomal protein S1 [Ectocarpus siliculosus])

HSP 1 Score: 117.857 bits (294), Expect = 2.339e-25
Identity = 88/250 (35.20%), Postives = 130/250 (52.00%), Query Frame = 0
Query:  108 KKHFDFLKEVGKNKKQARANKARFRDQRDEYLEEMRKAFKLMQI-KERQESGFK---WVKRPKRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLV---PAEVETAEEQEAR-TGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPRV 349
            K H D+L E  +N++ A A       +R++Y ++  +  K+  I KER     +   W  R  R+    L +L+ G   +G V  V+ +GA+VD  A +DG + ++D+ +  F   A + V   D +   VK++ P  G +  SLV   P E +           + +V    ELWG V +V+N GA+V+VGAEV GFL +   P R  G     V     RLRV+A EVDR+  R+KLT +RPRSLPR 
Sbjct:  102 KAHNDYLDEAQRNREIAAA-------RREKYTKKFYRDKKIYDIVKERGRKAVREATWATRWPRQVTRKLEDLQEGEWIKGKVRNVESYGAWVDVNAERDGLLHVKDMGE-TFTPSAGEVVATKDIIQARVKFVDPVTGKLGLSLVEDGPREGDLPLPPPRPPISVADVSRGAELWGYVERVTNMGAYVNVGAEVPGFLLLKEIPGRPRGLGAPQVLRRNKRLRVYAREVDREGLRIKLTCKRPRSLPRC 343          
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|397629230|gb|EJK69266.1| (hypothetical protein THAOC_09487 [Thalassiosira oceanica])

HSP 1 Score: 112.849 bits (281), Expect = 4.429e-24
Identity = 79/241 (32.78%), Postives = 132/241 (54.77%), Query Frame = 0
Query:  122 KQARANKARFRDQRDEYLEEMRKAFKLMQIKERQESGFKWVKRP---KRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEV----------ETAEEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYP--RRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLP 347
            K+A+    R + +R+    + R+     +  E Q    K+V+R      +++  L ++E G+   G VI++ + GAY+D G   DG + +  +S  +FV   R+Y+ PGD     V  + P +  +  +++P EV          E   +++ R  L+E+E DDELWGE+ +V++YGA+V+VG+  +GFLH + +P    S GA  +D+   G R+RVW ++VD    R+KLT  RP  LP
Sbjct:  104 KEAQERAIRNKKRREPAAAKKRRLHSQYKEMESQSKREKYVRRDLPVNSKKRTLLKDIEPGTSLSGKVISLTKFGAYIDVGTEADGLLHVSQISRDEFVEHPRNYLAPGDEAEVRVVRVDPTQKKLQLTMLPEEVLDEENVMKSLEMNPDEDDRIQLDEIEVDDELWGEIRRVTDYGAYVEVGSVTRGFLHFMDHPSWEDSVGAHPRDIMSVGDRVRVWVVDVDGMLNRIKLTANRPTGLP 344          
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|1189388002|gb|OSX75041.1| (hypothetical protein BU14_0257s0011 [Porphyra umbilicalis])

HSP 1 Score: 99.3673 bits (246), Expect = 2.329e-19
Identity = 63/139 (45.32%), Postives = 81/139 (58.27%), Query Frame = 0
Query:  173 LGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLV-P-AEVETAEEQEA--RTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHV-IYYPRR 306
            L  L  G R +G V  + +HGAYVD GAT DG V LRD+S  +FV +  D + PGD V  +VKY     G +  SL+ P   V T   Q A  RT L +V     + G V +VSN+GA+VDVGA + GF+HV + Y RR
Sbjct:  117 LDALVAGQRLDGTVTNLVKHGAYVDVGATTDGLVHLRDMSV-EFVHEPEDILAPGDTVEVYVKYAEEVTGRLALSLLRPRPSVATPLPQAARGRTRLVDVAVGSRVLGTVRRVSNFGAYVDVGAAMDGFVHVSLLYGRR 254          
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|935661819|ref|WP_054493886.1| (hypothetical protein [Ardenticatena maritima] >gi|913353223|dbj|GAP64152.1| small subunit ribosomal protein S1 [Ardenticatena maritima])

HSP 1 Score: 89.3521 bits (220), Expect = 3.577e-16
Identity = 58/189 (30.69%), Postives = 100/189 (52.91%), Query Frame = 0
Query:  168 ERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEVETAEEQEARTG---LEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGALTQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSLPRVDYSW 353
            E  + + EL  G   +G+V + +++GA+VD GA  DG V + +L D  FV    D V  GD V+ +VK +      ++ +++        ++EA  G   L ++EE  E  G VT + ++GAFVD+GAE  G +H+          + +DV   G  ++V  + +DR R+R+ L+   PR    ++Y++
Sbjct:   71 EITVHMDELTPGMELKGIVRSTQDYGAFVDIGAETDGLVHISELKDG-FVEKVEDVVSEGDEVTVWVKEIDLERKRISLTMIDPNAPRESQREADDGKLRLRDLEEGQEFTGIVTSIVDFGAFVDIGAETDGLVHISELSEERVNRV-EDVVEVGQEVKVRIIGIDRKRKRISLSMREPREA--IEYTF 255          
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|873237657|emb|CEL97137.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 89.3521 bits (220), Expect = 3.137e-15
Identity = 59/210 (28.10%), Postives = 111/210 (52.86%), Query Frame = 0
Query:  150 QIKERQESGFKWVKR-PKRERQIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSD--RDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEVETAEEQEA-----------RTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYY--PRRSEG---ALTQDVFFPGMRLR-VWAMEVDRDRRRLKLT 339
            Q K+ +   ++ VKR   +++ +P+    +G R  G VI +K+HGA++D G T+   + +RD+++    ++    D + PG  ++  VKY +P++G++  +L P +V+  + Q A           R  ++    ++ + G VT+V+  G FVD+GA+V  ++H +    P R  G     T D F  G   + ++   VD+ R RL++T
Sbjct:  146 QAKDGERQKWRKVKRLAPQKKLLPISMFRVGERIRGRVIQLKQHGAWIDIGCTQKALLHIRDMAEEGEGWISSPTDKLVPGQELNVTVKYAAPSQGVLAVTLRPNDVQRLQSQPAVVPEQAGPAERRRPVDSFRLEERVDGVVTRVTEKGCFVDIGADVDAWMHTMDVEDPYRDRGRNFKATSDFFHVGQHFQGLYIKTVDKVRNRLRVT 355          
BLAST of EWM22454.1 vs. NCBI_GenBank
Match: gi|1212019598|ref|WP_088569892.1| (hypothetical protein [Thermoflexus hugenholtzii] >gi|1210035547|emb|SNB51040.1| Ribosomal protein S1 [Thermoflexus hugenholtzii JAD2])

HSP 1 Score: 81.6481 bits (200), Expect = 2.030e-13
Identity = 57/178 (32.02%), Postives = 92/178 (51.69%), Query Frame = 0
Query:  170 QIPLGELELGSRHEGVVITVKEHGAYVDFGATKDGFVRLRDLSDRDFVLDARDYVRPGDAVSFFVKYLSPAEGIVTGSLVPAEVETAEEQEARTGLEEVEEDDELWGEVTKVSNYGAFVDVGAEVQGFLHVIYYPRRSEGAL-TQDVFFPGMRLRVWAMEVDRDRRRLKLTGERPRSL 346
            ++PL  L    + EG+V  V   GA+VD G+   GF+ +  L+ +  +L   D ++PGD V  +VK ++  +G+++ +L+         + A  G  ++    E  G VT+V   G FVD+ A V+GF+       R EG +    +F PG  +RVW +   R  RRL+LT   P S+
Sbjct:   19 RVPLRSLRPKMQVEGLVTAVTPAGAFVDIGSEIPGFIHISQLAPQP-ILRVSDVLKPGDRVIAWVKQVNRKKGLLSLTLI---------RPASYGWGQLRPGREFTGRVTRVEPDGLFVDIDAPVEGFVPASQI--RKEGRVDPTGLFHPGDEVRVWVVSASRRERRLRLTMIPPPSV 184          
The following BLAST results are available for this feature:
BLAST of EWM22454.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102960|gb|EWM22454.1|0.000e+0100.0030s ribosomal protein s1 [Nannochloropsis gaditana... [more]
gi|1072237763|gb|OEU22490.1|2.331e-2834.44S1-domain-containing protein [Fragilariopsis cylin... [more]
gi|1210524067|dbj|GAX16796.1|7.417e-2830.08small subunit ribosomal protein S1 [Fistulifera so... [more]
gi|1210527293|dbj|GAX13928.1|1.998e-2532.26small subunit ribosomal protein S1 [Fistulifera so... [more]
gi|299116075|emb|CBN74491.1|2.339e-2535.2030S ribosomal protein S1 [Ectocarpus siliculosus][more]
gi|397629230|gb|EJK69266.1|4.429e-2432.78hypothetical protein THAOC_09487 [Thalassiosira oc... [more]
gi|1189388002|gb|OSX75041.1|2.329e-1945.32hypothetical protein BU14_0257s0011 [Porphyra umbi... [more]
gi|935661819|ref|WP_054493886.1|3.577e-1630.69hypothetical protein [Ardenticatena maritima] >gi|... [more]
gi|873237657|emb|CEL97137.1|3.137e-1528.10unnamed protein product [Vitrella brassicaformis C... [more]
gi|1212019598|ref|WP_088569892.1|2.030e-1332.02hypothetical protein [Thermoflexus hugenholtzii] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8215rna8215Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications