|
|
Properties
| Property Name | Value |
|---|
| Product | rna binding protein |
| Orig transcript id | gnl|cribi|Naga_100011g13.3467.mrna |
| Orig protein id | gnl|cribi|Naga_100011g13.3467 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:71009..74385 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8200 ID=rna8200|Name=rna8200|organism=Nannochloropsis gaditana|type=mRNA|length=880bp
AAAATGTCCCACGCGGGGCTTATGTGGCCGATTAAACATCATCTCAGGCA
TCGTCTTACTGTACCAAGGAGCAATATGCTTAGTTGCTATATGACTTGGA
CTCGCATATGGCCCGCATCGAGGAACTGACCAATGGGCGAGGAACAAGCA
GGATGGAAACTATCAGAATACGGTTTTGGACAGCGTTCAGCGTCCTTTTT
TTCTTGAACTTCGTGCAAAGTAACATGTTCTTTGCATTTTCACATACGCG
GTATTGTCGCCGGCTGGTTCGCAGCCCTACCTTTACACACGCGTTCCGGG
TCACCCCTGCGTGCGGCTTGCAAGTTACCATCCACATCCGAGGGAAGCGC
TCGGGGGGGGAAGAGTTCTTGAACGACGCCTACCTTGAGTACACCAAGCG
CTTACGACCCGTCTTAGGCCTCACGACTGTATGGCACAAGACTGACTCGG
AGCTTGAAGCAGCAATCGCAAAGGAGAAAGCTCCTGTAATTTGTTTGGAC
GAGGGAGGAAAGCAACTATCGTCCATGGAACTTGCGGATATCCTCTACAA
GCGTCTAGAAGAAGGCGGGGCGCGCCTGTCTCTCGTCATAGGAGGAGCGG
AGGGCTTACCGCCTCGGTTGCGGGCCAGCAAGGAGCTTTGGAGCCTTTCG
CGTTTGACGTTTACGCACCAGTGGGCCCGTGTTCTCCTTGCCGAGCAGAT
TTACAGGGCCTCGGAGATAAAGAGAGGGAGCGGGTACCACAAAGAGTAAG
CATGGACTGCGGGGGGAGAGGTTTGGTCGGCAAAAAGCTGAAGTGGGCGT
TAGGGGGAATGTGTCAGCATCGACTGTATTTAAAGAAACAAACGGGTGGA
AAAAGTAAGAAAATACAGGAGATAGAGAGA back to topprotein sequence of rna8200 >rna8200-protein ID=rna8200-protein|Name=rna8200|organism=Nannochloropsis gaditana|type=polypeptide|length=361bp
MSKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVT
FETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDM
TASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHG
ITVQERKILVRLDRAHLEMMGHSPATMEASDTVTCGNIPWHTGDEVLACH
MAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDR
TLNVRFYRPNKTVVEGDAATSGFPSAYAVAPLGGERGGGAERGMRSRRMI
QGPSDGMGGNLAMNGGRGGMLGYDLYQQQHVPLQHMHAHQHLHQPPLQHL
MMQPFPGPVRN back to topmRNA from alignment at KK037248.1:71009..74385- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8200 ID=rna8200|Name=rna8200|organism=Nannochloropsis gaditana|type=mRNA|length=3377bp|location=Sequence derived from alignment at KK037248.1:71009..74385- (Nannochloropsis gaditana)
AATGTGTAATAACACCCTTTTATTTTATCCGATGTTCAGCTTACTGATAA
GCTTCACCCCATTGAACTCTCAACGAATTACGAAAGTGTGAGCGATGTCT
TTCTGTCCCCCCCTGGGACGATCGCTGTGATGCCTAGATTTGTTTGCATC
AAAGACCACACACCGTCTGGTCGTACAGTGTAGACGCGACGGAAAGTGTC
CAAGCTATTAGATGTGCTTCACTGCATTAGCACTGATTGTGGTTGCACAA
GCGATGCTTCTCACAGATATTCATCGCCATCTCTGATACATGCTATGAAG
TTGACTCTTCTTGAAATAAATGACTCAGGACAAGCACCACGCTACAGGAA
ACGACGCTGCAGCCTTTTCAGGCGAACGCGCAAGTTTACTGGTGAAGATT
AGGGTTGTCGACTGGCATTGGAGTAAGAGGAGAGATGAGCAAGACCGTTT
TCGTGGTGAGTGGTGGACGCACTCCTCCCTGAGAGTTGCGTTTGACGGTA
TGGAATACAACTGTCGAAAATACCTGTCGCAATGTTTCGGTTGCGGAGAG
TGTGGATATGTGCACACGTTACACACGCGACATTTCGAGAACGCGATCAC
CGTCCTGTCAAGCTGACATGGGTGTCCTGACAGATTCAATCTTCTTTCAA
CGTTTCTTCAACTTTTAGGGTAATCTATCATGGGGCACCACCGCAGACAG
TCTGACAGCCATCATGGAGACAGCCGGTCGTGTGTTGGGCGTCGAAGTCC
AAGCACATAGTGACACGGGCCGCTCCAAGGGGTGGGCGTAAGTGTGATTG
GGGATTTTCTGGAAGCAGTGAGGATATTGCCAAAAAGTGCGCGATTTCCC
TGCCTTCATCGCTAAGTGTTTCCCGTCCTGGCTTCTTCCCCCTTTCTCCC
TCGCTCCCCCCTGTTCTGCACGCCAGCCTCGTCACATTTGAGACAGCAGA
GGATGCGAGCAGAGCGATGGAGCTACTGTGTGGACGGGAGGTGGAAGGTC
GGCCGTTGTACGTCCGAGAGGACCGAACCGAGATTGAGAAGGAGGAGGGA
TTCGTCGTATTTGTAAGTCGCACGTGCATGCACCCCAGGAGAAGAAGGAG
AGCTTGAGGGGAGGACATCGAAGACGGGGACTGGATCCCCACTTTTATTG
TAAGAACGGCCTATCCAGTGCCTTCACATCGGCTTCACTTTCTCTCTCTA
ATTTGCTTTTCCTCTCCTCCCGCCGATGCTGTCAGGTGGGGAATCTGCCC
TGGGACATGACGGCGAGCGGGCTGCGGACCGTCTTCAGCGAGTTCAGCCC
CTACGACGTACACATCAAGACCAACATGTCCGGGCGCTCCCGAGGCTTTG
GCCTTCTACGCTTCCGGTCCTCGGAGGAAGCACAACGCGCCATCGAGCAG
ATGCACGGGATAACGGTCCAAGAGCGGAAGATTCTTGTCCGCTTGGACCG
GGCGCATCTGGAGATGATGGGCCACAGCCCTGCGACCATGGAGGCAAGCG
ACACCGTCACCTGCGGAAACATTCCGTGGCACACGGGGGACGAGGTCTTG
GCCTGTCACATGGCGCAGGCGGGGAGGGTGGTCTCGTGTCAGATCCAACG
GCACGCGGATACCCTGCGGAGCAAGGGTTGGGCGTAAGTGGAGGGGAGGA
GGAGCTGATCGGACAGGGCGGAGGACAAGAGGGTTAAGACTCCTGAGTGG
AACTTGCTGTGGCTGTCACGCTAGGCTTAGACGTGGACCCCGCCCGAAAG
TGTGCGGCTGCTCGTCTCGGCGGCCGTCAACCTTCGGGCCATCTACCAAG
AATACTCAATGAAGCATACCATCCTCCCACCCTGCAGGATCATCCGCTAC
GTCACAGTTGAGGAGGGCACGAACGCGGTCCGCTCCCTGCATCGGACTGT
CCTGGACGACCGGACCCTCAACGTGCGCTTCTACCGGCCAAACAAGACGG
TGGTAGAGGGGGACGCGGCCACCTCGGGCTTCCCCTCCGCGTACGCAGTG
GCGCCTTTGGGAGGAGAGCGAGGGGGCGGGGCGGAGAGGGGGATGAGGAG
CAGGAGGATGATTCAGGGACCAAGTGATGGGATGGGCGGGAACCTGGCGA
TGAATGGCGGGCGAGGGGGGATGCTCGGTTACGACCTGTACCAACAGCAG
CACGTGCCCTTGCAGCACATGCACGCACACCAGCACTTGCATCAACCGCC
GCTGCAACACTTGATGATGCAGCCCTTCCCGGGACCGGTTAGGAATTAAA
AGGGTGAAGGCGGTGGTCAGACTGTATCTCTGCTTGTGGTGATGCGAATG
AGGGAGAGGAATCGGTGGGCGTCTCTTCTCTCCAGGCTTCCTGCGGGCCA
TAGTGATGTATTTCAGCCATTTGCATATTATGTGCACCTTCACTGATACG
TGTCAGCCGCCGAAGTCCGTCAATGAACGCGTCTTCGGGGAGTTGAGGGT
TATGTATGTATGACGGACCTTCGCGCAGCTTCTGATGTGTGTTGCAAGTA
ATTTTTTTGGGGATGGTGGGGGCCTCTTTGATCGAGACTGTATTCCTTCA
TGATGACATGATCTCAGTAAGGAATGTGTGACACTGAGCTCTTTCAGAAA
GAGCGCTTGCAAGGACGCAATGGAGGAAAACTTCGGGTGAGATCCGAGCT
GAGCAACGCGTTTGCATTCGTGTGAGAGACGCGTGCGCGGACTCGTTGTG
GATTTGGAGGCCCAAAGAGGCATCCGTCGACGACCTTGGATCGCAAATCG
ACGAAAGTCCACAGCGACCGCTGAAAATGTGTGTTTTGCAAGTTTCCGGA
GCACTTAAAGATGGTTGTACTCAATAATAGATTGCGAGCCTTGTAGCCCT
CCTATCGTCATGCGCGTACCGCCCACTGCCAATATGCATGTCTTGTCGTA
GGATACAGTAAGCACAGTGTACAATCAGCATCCCGGGTATTACAAGGACG
TGAGCAGCCATTCTGCTGTTGGACTTGATAAGAGAGGGGCAGAAATCAAC
GCATTACAAGGAACAAATACAGGCAGATTGGGGTGAAATGGGGTTCAATA
GAGTTCGGGGCACAAAAGGAGTACGATTTGACTATAAAAGTGACAGAGGA
GAATTGATATGTTGGAACAATAAATTAATCAAAGAGAGGTCAGAAATGAT
GAAAATGAGCATTTCCAAGGCATTGGATAGGAATATCTTAAGCCTTACTA
GAGAGGCTGACATTGGTGAATGTTAATTTTATGATTAACACACATTAGGA
TCTATCGTGGTTAAAGAAAGTAGGAGTAGCAAAGTCAGGCGGACTGGGAA
AGGCCGCGTCGAATACTTCCCTCCGAGTGAGAGACAAATCTGAAAGAATG
AACTATGTGAGAGTTCCAAATCCAATC back to topCoding sequence (CDS) from alignment at KK037248.1:71009..74385- >rna8200 ID=rna8200|Name=rna8200|organism=Nannochloropsis gaditana|type=CDS|length=5430bp|location=Sequence derived from alignment at KK037248.1:71009..74385- (Nannochloropsis gaditana)
GATCATCCGCTACGTCACAGTTGAGGAGGGCACGAACGCGGTCCGCTCCC
TGCATCGGACTGTCCTGGACGACCGGACCCTCAACGTGCGCTTCTACCGG
CCAAACAAGACGGTGGTAGAGGGGGACGCGGCCACCTCGGGCTTCCCCTC
CGCGTACGCAGTGGCGCCTTTGGGAGGAGAGCGAGGGGGCGGGGCGGAGA
GGGGGATGAGGAGCAGGAGGATGATTCAGGGACCAAGTGATGGGATGGGC
GGGAACCTGGCGATGAATGGCGGGCGAGGGGGGATGCTCGGTTACGACCT
GTACCAACAGCAGCACGTGCCCTTGCAGCACATGCACGCACACCAGCACT
TGCATCAACCGCCGCTGCAACACTTGATGATGCAGCCCTTCCCGGGACCG
GTTAGGAATTAAGTGGGGAATCTGCCCTGGGACATGACGGCGAGCGGGCT
GCGGACCGTCTTCAGCGAGTTCAGCCCCTACGACGTACACATCAAGACCA
ACATGTCCGGGCGCTCCCGAGGCTTTGGCCTTCTACGCTTCCGGTCCTCG
GAGGAAGCACAACGCGCCATCGAGCAGATGCACGGGATAACGGTCCAAGA
GCGGAAGATTCTTGTCCGCTTGGACCGGGCGCATCTGGAGATGATGGGCC
ACAGCCCTGCGACCATGGAGGCAAGCGACACCGTCACCTGCGGAAACATT
CCGTGGCACACGGGGGACGAGGTCTTGGCCTGTCACATGGCGCAGGCGGG
GAGGGTGGTCTCGTGTCAGATCCAACGGCACGCGGATACCCTGCGGAGCA
AGGGTTGGGCCCTCGTCACATTTGAGACAGCAGAGGATGCGAGCAGAGCG
ATGGAGCTACTGTGTGGACGGGAGGTGGAAGGTCGGCCGTTGTACGTCCG
AGAGGACCGAACCGAGATTGAGAAGGAGGAGGGATTCGTCGTATTTGGTA
ATCTATCATGGGGCACCACCGCAGACAGTCTGACAGCCATCATGGAGACA
GCCGGTCGTGTGTTGGGCGTCGAAGTCCAAGCACATAGTGACACGGGCCG
CTCCAAGGGGTGGGCATGAGCAAGACCGTTTTCGTGGATCATCCGCTACG
TCACAGTTGAGGAGGGCACGAACGCGGTCCGCTCCCTGCATCGGACTGTC
CTGGACGACCGGACCCTCAACGTGCGCTTCTACCGGCCAAACAAGACGGT
GGTAGAGGGGGACGCGGCCACCTCGGGCTTCCCCTCCGCGTACGCAGTGG
CGCCTTTGGGAGGAGAGCGAGGGGGCGGGGCGGAGAGGGGGATGAGGAGC
AGGAGGATGATTCAGGGACCAAGTGATGGGATGGGCGGGAACCTGGCGAT
GAATGGCGGGCGAGGGGGGATGCTCGGTTACGACCTGTACCAACAGCAGC
ACGTGCCCTTGCAGCACATGCACGCACACCAGCACTTGCATCAACCGCCG
CTGCAACACTTGATGATGCAGCCCTTCCCGGGACCGGTTAGGAATTAAGT
GGGGAATCTGCCCTGGGACATGACGGCGAGCGGGCTGCGGACCGTCTTCA
GCGAGTTCAGCCCCTACGACGTACACATCAAGACCAACATGTCCGGGCGC
TCCCGAGGCTTTGGCCTTCTACGCTTCCGGTCCTCGGAGGAAGCACAACG
CGCCATCGAGCAGATGCACGGGATAACGGTCCAAGAGCGGAAGATTCTTG
TCCGCTTGGACCGGGCGCATCTGGAGATGATGGGCCACAGCCCTGCGACC
ATGGAGGCAAGCGACACCGTCACCTGCGGAAACATTCCGTGGCACACGGG
GGACGAGGTCTTGGCCTGTCACATGGCGCAGGCGGGGAGGGTGGTCTCGT
GTCAGATCCAACGGCACGCGGATACCCTGCGGAGCAAGGGTTGGGCCCTC
GTCACATTTGAGACAGCAGAGGATGCGAGCAGAGCGATGGAGCTACTGTG
TGGACGGGAGGTGGAAGGTCGGCCGTTGTACGTCCGAGAGGACCGAACCG
AGATTGAGAAGGAGGAGGGATTCGTCGTATTTGGTAATCTATCATGGGGC
ACCACCGCAGACAGTCTGACAGCCATCATGGAGACAGCCGGTCGTGTGTT
GGGCGTCGAAGTCCAAGCACATAGTGACACGGGCCGCTCCAAGGGGTGGG
CATGAGCAAGACCGTTTTCGTGGATCATCCGCTACGTCACAGTTGAGGAG
GGCACGAACGCGGTCCGCTCCCTGCATCGGACTGTCCTGGACGACCGGAC
CCTCAACGTGCGCTTCTACCGGCCAAACAAGACGGTGGTAGAGGGGGACG
CGGCCACCTCGGGCTTCCCCTCCGCGTACGCAGTGGCGCCTTTGGGAGGA
GAGCGAGGGGGCGGGGCGGAGAGGGGGATGAGGAGCAGGAGGATGATTCA
GGGACCAAGTGATGGGATGGGCGGGAACCTGGCGATGAATGGCGGGCGAG
GGGGGATGCTCGGTTACGACCTGTACCAACAGCAGCACGTGCCCTTGCAG
CACATGCACGCACACCAGCACTTGCATCAACCGCCGCTGCAACACTTGAT
GATGCAGCCCTTCCCGGGACCGGTTAGGAATTAAGTGGGGAATCTGCCCT
GGGACATGACGGCGAGCGGGCTGCGGACCGTCTTCAGCGAGTTCAGCCCC
TACGACGTACACATCAAGACCAACATGTCCGGGCGCTCCCGAGGCTTTGG
CCTTCTACGCTTCCGGTCCTCGGAGGAAGCACAACGCGCCATCGAGCAGA
TGCACGGGATAACGGTCCAAGAGCGGAAGATTCTTGTCCGCTTGGACCGG
GCGCATCTGGAGATGATGGGCCACAGCCCTGCGACCATGGAGGCAAGCGA
CACCGTCACCTGCGGAAACATTCCGTGGCACACGGGGGACGAGGTCTTGG
CCTGTCACATGGCGCAGGCGGGGAGGGTGGTCTCGTGTCAGATCCAACGG
CACGCGGATACCCTGCGGAGCAAGGGTTGGGCCCTCGTCACATTTGAGAC
AGCAGAGGATGCGAGCAGAGCGATGGAGCTACTGTGTGGACGGGAGGTGG
AAGGTCGGCCGTTGTACGTCCGAGAGGACCGAACCGAGATTGAGAAGGAG
GAGGGATTCGTCGTATTTGGTAATCTATCATGGGGCACCACCGCAGACAG
TCTGACAGCCATCATGGAGACAGCCGGTCGTGTGTTGGGCGTCGAAGTCC
AAGCACATAGTGACACGGGCCGCTCCAAGGGGTGGGCATGAGCAAGACCG
TTTTCGTGGATCATCCGCTACGTCACAGTTGAGGAGGGCACGAACGCGGT
CCGCTCCCTGCATCGGACTGTCCTGGACGACCGGACCCTCAACGTGCGCT
TCTACCGGCCAAACAAGACGGTGGTAGAGGGGGACGCGGCCACCTCGGGC
TTCCCCTCCGCGTACGCAGTGGCGCCTTTGGGAGGAGAGCGAGGGGGCGG
GGCGGAGAGGGGGATGAGGAGCAGGAGGATGATTCAGGGACCAAGTGATG
GGATGGGCGGGAACCTGGCGATGAATGGCGGGCGAGGGGGGATGCTCGGT
TACGACCTGTACCAACAGCAGCACGTGCCCTTGCAGCACATGCACGCACA
CCAGCACTTGCATCAACCGCCGCTGCAACACTTGATGATGCAGCCCTTCC
CGGGACCGGTTAGGAATTAAGTGGGGAATCTGCCCTGGGACATGACGGCG
AGCGGGCTGCGGACCGTCTTCAGCGAGTTCAGCCCCTACGACGTACACAT
CAAGACCAACATGTCCGGGCGCTCCCGAGGCTTTGGCCTTCTACGCTTCC
GGTCCTCGGAGGAAGCACAACGCGCCATCGAGCAGATGCACGGGATAACG
GTCCAAGAGCGGAAGATTCTTGTCCGCTTGGACCGGGCGCATCTGGAGAT
GATGGGCCACAGCCCTGCGACCATGGAGGCAAGCGACACCGTCACCTGCG
GAAACATTCCGTGGCACACGGGGGACGAGGTCTTGGCCTGTCACATGGCG
CAGGCGGGGAGGGTGGTCTCGTGTCAGATCCAACGGCACGCGGATACCCT
GCGGAGCAAGGGTTGGGCCCTCGTCACATTTGAGACAGCAGAGGATGCGA
GCAGAGCGATGGAGCTACTGTGTGGACGGGAGGTGGAAGGTCGGCCGTTG
TACGTCCGAGAGGACCGAACCGAGATTGAGAAGGAGGAGGGATTCGTCGT
ATTTGGTAATCTATCATGGGGCACCACCGCAGACAGTCTGACAGCCATCA
TGGAGACAGCCGGTCGTGTGTTGGGCGTCGAAGTCCAAGCACATAGTGAC
ACGGGCCGCTCCAAGGGGTGGGCATGAGCAAGACCGTTTTCGTGGATCAT
CCGCTACGTCACAGTTGAGGAGGGCACGAACGCGGTCCGCTCCCTGCATC
GGACTGTCCTGGACGACCGGACCCTCAACGTGCGCTTCTACCGGCCAAAC
AAGACGGTGGTAGAGGGGGACGCGGCCACCTCGGGCTTCCCCTCCGCGTA
CGCAGTGGCGCCTTTGGGAGGAGAGCGAGGGGGCGGGGCGGAGAGGGGGA
TGAGGAGCAGGAGGATGATTCAGGGACCAAGTGATGGGATGGGCGGGAAC
CTGGCGATGAATGGCGGGCGAGGGGGGATGCTCGGTTACGACCTGTACCA
ACAGCAGCACGTGCCCTTGCAGCACATGCACGCACACCAGCACTTGCATC
AACCGCCGCTGCAACACTTGATGATGCAGCCCTTCCCGGGACCGGTTAGG
AATTAAGTGGGGAATCTGCCCTGGGACATGACGGCGAGCGGGCTGCGGAC
CGTCTTCAGCGAGTTCAGCCCCTACGACGTACACATCAAGACCAACATGT
CCGGGCGCTCCCGAGGCTTTGGCCTTCTACGCTTCCGGTCCTCGGAGGAA
GCACAACGCGCCATCGAGCAGATGCACGGGATAACGGTCCAAGAGCGGAA
GATTCTTGTCCGCTTGGACCGGGCGCATCTGGAGATGATGGGCCACAGCC
CTGCGACCATGGAGGCAAGCGACACCGTCACCTGCGGAAACATTCCGTGG
CACACGGGGGACGAGGTCTTGGCCTGTCACATGGCGCAGGCGGGGAGGGT
GGTCTCGTGTCAGATCCAACGGCACGCGGATACCCTGCGGAGCAAGGGTT
GGGCCCTCGTCACATTTGAGACAGCAGAGGATGCGAGCAGAGCGATGGAG
CTACTGTGTGGACGGGAGGTGGAAGGTCGGCCGTTGTACGTCCGAGAGGA
CCGAACCGAGATTGAGAAGGAGGAGGGATTCGTCGTATTTGGTAATCTAT
CATGGGGCACCACCGCAGACAGTCTGACAGCCATCATGGAGACAGCCGGT
CGTGTGTTGGGCGTCGAAGTCCAAGCACATAGTGACACGGGCCGCTCCAA
GGGGTGGGCATGAGCAAGACCGTTTTCGTG back to top
|