EWM22467.1, cds8176 (CDS) Nannochloropsis gaditana

Overview
NameEWM22467.1
Unique Namecds8176
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:73931..73951 -
Alignment locationKK037248.1:73599..73717 -
Alignment locationKK037248.1:73324..73459 -
Alignment locationKK037248.1:72753..73150 -
Alignment locationKK037248.1:72137..72548 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22467.1
Productrna binding protein
Orig transcript idgnl|cribi|Naga_100011g13.3467.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:73931..73951 -
KK037248.1supercontigKK037248.1:73599..73717 -
KK037248.1supercontigKK037248.1:73324..73459 -
KK037248.1supercontigKK037248.1:72753..73150 -
KK037248.1supercontigKK037248.1:72137..72548 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM22467.1 vs. NCBI_GenBank
Match: gi|585102973|gb|EWM22467.1| (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 747.273 bits (1928), Expect = 0.000e+0
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0
Query:    1 MSKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLEMMGHSPATMEASDTVTCGNIPWHTGDEVLACHMAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRFYRPNKTVVEGDAATSGFPSAYAVAPLGGERGGGAERGMRSRRMIQGPSDGMGGNLAMNGGRGGMLGYDLYQQQHVPLQHMHAHQHLHQPPLQHLMMQPFPGPVRN 361
            MSKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLEMMGHSPATMEASDTVTCGNIPWHTGDEVLACHMAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRFYRPNKTVVEGDAATSGFPSAYAVAPLGGERGGGAERGMRSRRMIQGPSDGMGGNLAMNGGRGGMLGYDLYQQQHVPLQHMHAHQHLHQPPLQHLMMQPFPGPVRN
Sbjct:    1 MSKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLEMMGHSPATMEASDTVTCGNIPWHTGDEVLACHMAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRFYRPNKTVVEGDAATSGFPSAYAVAPLGGERGGGAERGMRSRRMIQGPSDGMGGNLAMNGGRGGMLGYDLYQQQHVPLQHMHAHQHLHQPPLQHLMMQPFPGPVRN 361          
BLAST of EWM22467.1 vs. NCBI_GenBank
Match: gi|553179889|ref|XP_005852780.1| (hypothetical protein NGA_0682100 [Nannochloropsis gaditana CCMP526] >gi|422295750|gb|EKU23049.1| hypothetical protein NGA_0682100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 409.453 bits (1051), Expect = 1.656e-141
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MSKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLEMMGHSPATMEASDTVTCGNIPWHTGDEVLAC 199
            MSKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLEMMGHSPATMEASDTVTCGNIPWHTGDEVLAC
Sbjct:    1 MSKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLEMMGHSPATMEASDTVTCGNIPWHTGDEVLAC 199          

HSP 2 Score: 60.8474 bits (146), Expect = 3.714e-7
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 0
Query:  180 SDTVTCGNIPWHTGDEVLACHMAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRFYRPNKTVVEG 266
            S TV  GN+ W T  + L   M  AGRV+  ++Q H+DT RSKGWA++ + T E+ + A+  L    ++ R L VR  R      EG
Sbjct:    2 SKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEG 88          
BLAST of EWM22467.1 vs. NCBI_GenBank
Match: gi|585101195|gb|EWM21128.1| (poly binding cytoplasmic isoform cra_c [Nannochloropsis gaditana])

HSP 1 Score: 189.119 bits (479), Expect = 5.912e-55
Identity = 92/216 (42.59%), Postives = 139/216 (64.35%), Query Frame = 0
Query:   47 ALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLEMMGHSPATMEA-----SDTVTCGNIPWHTGDEVLACHMAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRFY 257
            +L+ +   E A++A+E L G+E++ R L+VREDR+ ++  EG VVFVGNLPW +T+  L+ +F E++P DVH+KTNM+GRSRGF L++F  +E A  AI  ++G  ++ R I VR DR   E                +D VT  N+ W T +  L   +++AG VV  +IQRHADT RSKGWAI  + + +E  NA+ +L++TV+  R ++++FY
Sbjct:    6 SLIHYSAPEVAAKAIEALNGQELDNRKLHVREDRSYLDSAEGVVVFVGNLPWSVTSEALQELFKEYNPLDVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKFY 221          

HSP 2 Score: 73.1738 bits (178), Expect = 2.654e-11
Identity = 58/173 (33.53%), Postives = 90/173 (52.02%), Query Frame = 0
Query:    5 VFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFV-------------VFVGNLPWDMTASGLRTVFSEF-SPYDVHIKTNM-SGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRL 162
            VFVGNL W  T+++L  + +     L V V+ +   GRS+G+ALV F  AE A  A+  L G ++EGRP+ VR DR + E  EG               V + NL W      L ++ S+  +   V I+ +  +GRS+G+ +  F S +EA  AI  ++   V++R I ++ 
Sbjct:   50 VFVGNLPWSVTSEALQELFKEYNP-LDVHVKTNM-AGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKF 220          

HSP 3 Score: 67.3958 bits (163), Expect = 2.174e-9
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 0
Query:    1 MSKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVR 77
            ++  V + NL+W T    L +++  AG V+GVE+Q H+DTGRSKGWA+ TF + ++A  A+  L    V  RP+ ++
Sbjct:  143 LTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMK 219          
BLAST of EWM22467.1 vs. NCBI_GenBank
Match: gi|299471941|emb|CBN79621.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 182.57 bits (462), Expect = 9.781e-51
Identity = 85/161 (52.80%), Postives = 110/161 (68.32%), Query Frame = 0
Query:    4 TVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDR 164
            TVFVGNLSWGTT++ L   M + G V+  EVQ+H+D+GRSKGW LVT+     A  A+E L   ++ GRP+++R DR E+E   GF VFVGNLPW  T   L+ +F+ + PYD H+KTNM+GRSRGFG+LRF + E  QRAI +M    +  R I VR DR
Sbjct:   53 TVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDR 213          

HSP 2 Score: 85.5001 bits (210), Expect = 7.125e-15
Identity = 58/169 (34.32%), Postives = 83/169 (49.11%), Query Frame = 0
Query:   90 VVFVGNLPWDMTASGLRTV---FSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLEMMGHSPATMEASDTVTCGNIPWHTGDEVLACHMAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVR 255
             VFVGNL W  T+  LRT      E    +V    + SGRS+G+GL+ +     A+ AIEQ++   +  R I +RLDR  +E  G  P        V  GN+PW T DE L    A       C ++ +    RS+G+ I+R+ T E G  A+  +    +D R + VR
Sbjct:   53 TVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHAD-SGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFP--------VFVGNLPWSTTDEDLQQIFAPY-EPYDCHVKTNM-AGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVR 210          

HSP 3 Score: 64.3142 bits (155), Expect = 7.826e-8
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 0
Query:    4 TVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDR 80
            TVFVGNL+WGTT D L A  +TAG V+   VQ  + +GRSKGW LV + +  +   A+  L    +  R L VR DR
Sbjct:  286 TVFVGNLAWGTTDDDLLATFQTAGAVVSAHVQI-APSGRSKGWGLVKYSSPTETETAVTELNNTMLHERRLTVRLDR 361          
BLAST of EWM22467.1 vs. NCBI_GenBank
Match: gi|514691886|ref|XP_004993516.1| (hypothetical protein PTSG_05647 [Salpingoeca rosetta] >gi|326428383|gb|EGD73953.1| hypothetical protein PTSG_05647 [Salpingoeca rosetta])

HSP 1 Score: 123.25 bits (308), Expect = 2.364e-28
Identity = 86/280 (30.71%), Postives = 129/280 (46.07%), Query Frame = 0
Query:    4 TVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDR------------------------TEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYD-VHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLEMMGHSPATMEASDTVTCGNIPWHTGDEVLACHMAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRFYR 258
            +V+VGNLSW TT   L   M   G V   +V      GRSKG  +V F   E A+RA+  + GRE++GR + VREDR                             E G  V+VG LP+ MT   L+ +  +  P + V +  + +G S+G GL+RF ++E+AQ AI   +   +  R +LVR+D                  +V  GN+PW      L   M  AG V+  ++  H +   S+GW I+R+V+ +    A+   +      R++ VR  R
Sbjct:   59 SVYVGNLSWSTTWPRLKEFMSEIGHVAFADV-LRDMNGRSKGCGIVVFGDVETANRAIAEMSGRELDGRQIMVREDREAHRFPRRSARPPAPMHRPSTNYTATFSGEMGSTVYVGGLPYSMTWQHLKDLMRKAGPVEHVEVMYDGNGMSKGCGLVRFATAEDAQNAIRMFNEQPLDGRNLLVRVD--------AEADKYRRGVSVHVGNLPWEVTWRELKDLMRPAGEVIHAEVM-HDNNGLSRGWGIVRFVSADGANAAIEQFNEFEWLGRSITVRLDR 328          

HSP 2 Score: 98.5969 bits (244), Expect = 1.943e-19
Identity = 65/169 (38.46%), Postives = 88/169 (52.07%), Query Frame = 0
Query:    1 MSKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSP-YDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLE 168
            M  TV+VG L +  T   L  +M  AG V  VEV  +   G SKG  LV F TAEDA  A+ +   + ++GR L VR D    +   G  V VGNLPW++T   L+ +           +  + +G SRG+G++RF S++ A  AIEQ +      R I VRLDR   E
Sbjct:  165 MGSTVYVGGLPYSMTWQHLKDLMRKAGPVEHVEVM-YDGNGMSKGCGLVRFATAEDAQNAIRMFNEQPLDGRNLLVRVDAEADKYRRGVSVHVGNLPWEVTWRELKDLMRPAGEVIHAEVMHDNNGLSRGWGIVRFVSADGANAAIEQFNEFEWLGRSITVRLDRREAE 332          

HSP 3 Score: 80.8777 bits (198), Expect = 2.218e-13
Identity = 60/189 (31.75%), Postives = 89/189 (47.09%), Query Frame = 0
Query:   84 EKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYD-VHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDR---------AHLEMMGHSPATM-------EASDTVTCGNIPWHTGDEVLACHMAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVR 255
            + + G  V+VGNL W  T   L+   SE        +  +M+GRS+G G++ F   E A RAI +M G  +  R+I+VR DR         A      H P+T        E   TV  G +P+    + L   M +AG V   ++    + + SKG  ++R+ T E+  NA+R  +   LD R L VR
Sbjct:   53 QNQPGTSVYVGNLSWSTTWPRLKEFMSEIGHVAFADVLRDMNGRSKGCGIVVFGDVETANRAIAEMSGRELDGRQIMVREDREAHRFPRRSARPPAPMHRPSTNYTATFSGEMGSTVYVGGLPYSMTWQHLKDLMRKAGPVEHVEVMYDGNGM-SKGCGLVRFATAEDAQNAIRMFNEQPLDGRNLLVR 240          
BLAST of EWM22467.1 vs. NCBI_GenBank
Match: gi|255089439|ref|XP_002506641.1| (predicted protein [Micromonas commoda] >gi|226521914|gb|ACO67899.1| predicted protein [Micromonas commoda])

HSP 1 Score: 120.553 bits (301), Expect = 4.513e-28
Identity = 80/276 (28.99%), Postives = 128/276 (46.38%), Query Frame = 0
Query:    5 VFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRT-----------------EIEKEEGFVVFVGNLPWDMTASGLRTVFSEF-SPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRA--HLEMMGHSPATMEASD--TVTCGNIPWHTGDEVLACHMAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRFYR 258
            ++VGN+ W TT D L  I    G +  V++      GRS+G+ +V +    +A  A++ L G  +  R + VRED+                  +    +G   +VGNL W+     L    S+  +     +     GRS+G+GL+ F + + A  AI  +H   +Q R I+VRL+RA    +  G +    EAS    +   N+PW T  E L     Q G V+  +   HADT RSKGW  + + T E+   A++  +   L+ R + ++  R
Sbjct:    9 LYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGRQ-GRSRGYGIVEYSNVNEAQVAIQTLDGHTLGDRNITVREDKAPTKSAPSKSGGNRSTIGDTPAADGCRCYVGNLAWETNEESLIAHCSQVGTVVQAEVAKQPGGRSKGWGLVDFETPDAANSAINTLHNSDLQGRSIIVRLERAGGANKSGGPNAGRPEASSGLQIVVRNLPWSTTSEDLRQVFQQVGTVIKAEAVCHADTGRSKGWGTVLFETREQAQAAIQGFNGVELEHRPMQIKLDR 283          
BLAST of EWM22467.1 vs. NCBI_GenBank
Match: gi|303284108|ref|XP_003061345.1| (hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla CCMP1545] >gi|226457696|gb|EEH54995.1| hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla CCMP1545])

HSP 1 Score: 119.013 bits (297), Expect = 2.362e-27
Identity = 87/291 (29.90%), Postives = 128/291 (43.99%), Query Frame = 0
Query:    5 VFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRT------------------------EIEKEEGFVVFVGNLPWDMTASGLRTVFSEF-------SPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLEMMGHSPATMEASDTVTCG------NIPWHTGDEVLACHMAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRFYR 258
            ++VGNL W T  D L AI  + G +  V++      GRS+G+ +V + +A +A  A+  L G  +  R L VRED                          E    EG   ++GNL W+ TA  L   F ++       S  +  +     GRS+G+GL+ F S   A+ AI  +H   +Q R I+VRL+RA     G            + G      N+PW T  E L     Q G VV      HADT RSKGW  + + T E+   A++  +   L+ R + ++  R
Sbjct:   10 LYVGNLPWSTDVDELRAIFSSCGAITHVDI-PKGRQGRSRGYGIVEYSSAAEAQAAIAQLEGHTLGDRNLTVREDNAPTKTANSGGGSKSGGGRGSGNVMGETPAAEGCRCYIGNLAWETTAESLVGAFEDYPHFSSVGSVVNAEVAKQPGGRSKGWGLVDFESPAAAESAIATLHNSDLQGRSIIVRLERAGGATKGPGGGANAGRPEASSGLQIVVRNLPWTTTSEDLRQVFQQVGNVVKADAVCHADTGRSKGWGTVLFETREQAQAAIQGFNGVELESRPMQIKLDR 299          
BLAST of EWM22467.1 vs. NCBI_GenBank
Match: gi|695463847|ref|XP_009538814.1| (hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae] >gi|348666125|gb|EGZ05953.1| hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae])

HSP 1 Score: 119.783 bits (299), Expect = 3.141e-27
Identity = 85/267 (31.84%), Postives = 132/267 (49.44%), Query Frame = 0
Query:    5 VFVGNLSWGTTADSLTAIMETAGRV-LGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDR-----TEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVH--IKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDR-------AHLEMMGHSPATMEASDTVTCGNIPWHTGDEVLACHMAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRF 256
            V+VGNLSW      L   M+ AG V L   ++++   GRSKG  +VT+ET E A  A+  L   E+ GR ++VREDR     + ++ + GF V+VGNL W++    L+    +     VH  +    +GRS+G GL+ + + EEA +AI +++   ++ R I VR DR       +       +P        +  GN+PW T  + L       G V    I  + D  RS+G+ IIRY    +   A+  L+   ++ R + VR 
Sbjct:   91 VYVGNLSWSIKWQDLKDHMQAAGPVELATVLESN---GRSKGCGIVTYETEEAAQNAIATLNDTELGGRKIFVREDREAQPVSAVKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTV-VHADVLEEPNGRSKGCGLVEYATQEEAAKAIAELNNTELEGRLIFVREDREPEGGSISKFAKRAAAPRGSGEGRQLYVGNLPWETNWQQLKDLFRTVGDVERADIAEYPDG-RSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRL 352          

HSP 2 Score: 106.686 bits (265), Expect = 1.861e-22
Identity = 65/176 (36.93%), Postives = 100/176 (56.82%), Query Frame = 0
Query:    5 VFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDR-------TEIEKE--------EGFVVFVGNLPWDMTASGLRTVFSEFSPYD-VHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDR 164
            V+VGNLSW      L   M+ AG V+  +V    + GRSKG  LV + T E+A++A+  L   E+EGR ++VREDR       ++  K         EG  ++VGNLPW+     L+ +F      +   I     GRSRGFG++R+ ++ +A +AIE+++G+ ++ R I VRLD+
Sbjct:  180 VYVGNLSWNVKWQELKDHMKKAGTVVHADVLEEPN-GRSKGCGLVEYATQEEAAKAIAELNNTELEGRLIFVREDREPEGGSISKFAKRAAAPRGSGEGRQLYVGNLPWETNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDK 354          

HSP 3 Score: 85.8853 bits (211), Expect = 4.395e-15
Identity = 58/176 (32.95%), Postives = 84/176 (47.73%), Query Frame = 0
Query:   88 GFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLEMMGHSPATMEASDTVTCGNIPWHTGDEVLACHMAQAGRVVSCQIQRHADTL-----RSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRFYR 258
            G  V+VGNL W +    L+       P ++      +GRS+G G++ + + E AQ AI  ++   +  RKI VR DR    +    P   +    V  GN+ W+   + L  HM +AG VV      HAD L     RSKG  ++ Y T EE   A+  L+ T L+ R + VR  R
Sbjct:   88 GCRVYVGNLSWSIKWQDLKDHMQAAGPVELATVLESNGRSKGCGIVTYETEEAAQNAIATLNDTELGGRKIFVREDREAQPVSAVKP---KRGFRVYVGNLSWNVKWQELKDHMKKAGTVV------HADVLEEPNGRSKGCGLVEYATQEEAAKAIAELNNTELEGRLIFVREDR 254          
BLAST of EWM22467.1 vs. NCBI_GenBank
Match: gi|145354241|ref|XP_001421399.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144581636|gb|ABO99692.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 117.857 bits (294), Expect = 5.255e-27
Identity = 69/184 (37.50%), Postives = 98/184 (53.26%), Query Frame = 0
Query:   91 VFVGNLPWDMTASGLRTVFSEFSPYD-VHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRA-----------HLEMMGHSPATMEASDTVTC--GNIPWHTGDEVLACHMAQAG-RVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRFYRP 259
            ++VGN+PW  T   LR +F+E      V I T   GRSRG+GL+ F S  EAQ A+ +M G  + +R I VR D+A              ++G +PA     D   C  GN+ W T +E L  H A  G  VV C++ R +   RSKGWA++ + T EE  NA+  +H + +  R++ VR  RP
Sbjct:   11 LYVGNIPWSTTIEDLRELFAECGGVTRVDIPTGRQGRSRGYGLVEFNSEAEAQAAVTRMDGTPLGDRTITVREDKAPTKAAGGAKKASASVLGDAPA---GGDGCRCYFGNLAWETSEETLTSHCASFGVNVVQCEVARQSGG-RSKGWALVDFATPEEAQNAIEQMHNSEIQGRSIIVRVERP 190          

HSP 2 Score: 112.464 bits (280), Expect = 5.144e-25
Identity = 83/283 (29.33%), Postives = 130/283 (45.94%), Query Frame = 0
Query:    2 SKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKE------------------EGFVVFVGNLPWDMTASGLRTVFSEF--SPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLEMMGHSPATMEASDTVTCG------NIPWHTGDEVLACHMAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRFYR 258
            S  ++VGN+ W TT + L  +    G V  V++      GRS+G+ LV F +  +A  A+  + G  +  R + VRED+   +                    +G   + GNL W+ +   L +  + F  +     +     GRS+G+ L+ F + EEAQ AIEQMH   +Q R I+VR++R      G   A +E     + G      N+PW T  E L     Q G VV+     H DT RSKGW  + + T E+   A++  +   L+ R + ++  R
Sbjct:    8 SARLYVGNIPWSTTIEDLRELFAECGGVTRVDIPTGRQ-GRSRGYGLVEFNSEAEAQAAVTRMDGTPLGDRTITVREDKAPTKAAGGAKKASASVLGDAPAGGDGCRCYFGNLAWETSEETLTSHCASFGVNVVQCEVARQSGGRSKGWALVDFATPEEAQNAIEQMHNSEIQGRSIIVRVERPG---AGQKSARVETRPENSSGLQIVVRNLPWTTTSEDLRQVFQQVGNVVNAVAVCHTDTGRSKGWGTVLFETREQAQAAIQGFNGVELEHRPMQIKLDR 286          
BLAST of EWM22467.1 vs. NCBI_GenBank
Match: gi|1129187643|gb|OLP93515.1| (putative RNA-binding protein [Symbiodinium microadriaticum])

HSP 1 Score: 119.013 bits (297), Expect = 1.819e-26
Identity = 98/303 (32.34%), Postives = 136/303 (44.88%), Query Frame = 0
Query:    5 VFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEE--GFVVFVGNLPWDMTASGLRTVF---SEFSPYDVHIKTNMSG-RSRGFGLLRFRSSEE---------AQRAIEQMHGITVQERKILVRLDR---------------------AHLEMMGHSPATMEASDTVTCGNIPWHTGDEVLACHMAQAGRVVSCQI-QRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRFYRPNKTVVEGDAAT 270
            V+V NL W      L   M++ G V+  ++    DTGRS+G  LV F  AEDA RA+  L   E+ GR + VREDR +    E     V+VGNL W  T   L+  F    E    D+  + N+ G RS+G G++ F + EE         A  A+EQ+ G  +  RKI VR DR                     A  +  G   +  E    V  GN+P+    + L  HM Q G V+  +I     D  RSKG  ++ + T      AV+ LH ++L  R + VR Y  +     G  AT
Sbjct:   32 VYVSNLPWHVAWQELKDHMKSVGEVVYADIFTE-DTGRSRGCGLVAFRRAEDAQRAVLELNDSELSGRQIAVREDRVDQSTGERKDCRVYVGNLAWIATWKDLKDHFRSVGEVKRADILSEGNLEGARSKGAGIVEFSTKEEDLYPSDETRASAAVEQLTGTEILGRKIFVREDRESNRPQTLAWPPGDVWSRAMVAVAQGPGFRKSFAEPFTKVFAGNLPYSVTWQQLKDHMRQVGEVLHVEILMDDNDPRRSKGCGVVEFATFGAARRAVQYLHDSMLQGRLMYVREYHDDLKNAGGATAT 333          
The following BLAST results are available for this feature:
BLAST of EWM22467.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102973|gb|EWM22467.1|0.000e+0100.00rna binding protein [Nannochloropsis gaditana][more]
gi|553179889|ref|XP_005852780.1|1.656e-141100.00hypothetical protein NGA_0682100 [Nannochloropsis ... [more]
gi|585101195|gb|EWM21128.1|5.912e-5542.59poly binding cytoplasmic isoform cra_c [Nannochlor... [more]
gi|299471941|emb|CBN79621.1|9.781e-5152.80conserved unknown protein [Ectocarpus siliculosus][more]
gi|514691886|ref|XP_004993516.1|2.364e-2830.71hypothetical protein PTSG_05647 [Salpingoeca roset... [more]
gi|255089439|ref|XP_002506641.1|4.513e-2828.99predicted protein [Micromonas commoda] >gi|2265219... [more]
gi|303284108|ref|XP_003061345.1|2.362e-2729.90hypothetical protein MICPUCDRAFT_60999 [Micromonas... [more]
gi|695463847|ref|XP_009538814.1|3.141e-2731.84hypothetical protein PHYSODRAFT_348578 [Phytophtho... [more]
gi|145354241|ref|XP_001421399.1|5.255e-2737.50predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|1129187643|gb|OLP93515.1|1.819e-2632.34putative RNA-binding protein [Symbiodinium microad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8200rna8200Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications