EWM22458.1, cds8175 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|553179898|ref|XP_005852783.1| (ribosomal rna large subunit methyltransferase h [Nannochloropsis gaditana CCMP526] >gi|422295753|gb|EKU23052.1| ribosomal rna large subunit methyltransferase h [Nannochloropsis gaditana CCMP526] >gi|585102964|gb|EWM22458.1| ribosomal rna large subunit methyltransferase h [Nannochloropsis gaditana]) HSP 1 Score: 437.573 bits (1124), Expect = 2.346e-155 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0 Query: 1 MARIEELTNGRGTSRMETIRIRFWTAFSVLFFLNFVQSNMFFAFSHTRYCRRLVRSPTFTHAFRVTPACGLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213 MARIEELTNGRGTSRMETIRIRFWTAFSVLFFLNFVQSNMFFAFSHTRYCRRLVRSPTFTHAFRVTPACGLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE Sbjct: 1 MARIEELTNGRGTSRMETIRIRFWTAFSVLFFLNFVQSNMFFAFSHTRYCRRLVRSPTFTHAFRVTPACGLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|298705608|emb|CBJ28859.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 167.162 bits (422), Expect = 7.700e-49 Identity = 80/127 (62.99%), Postives = 96/127 (75.59%), Query Frame = 0 Query: 91 AYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKE----LWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213 AY EY KRLRPVL L T WHKTD +LEAA+ K+ V+CLDEGG+Q++S +D L+ +LEEGG+RL+ V+GGAEGLPP L+ SLS +TFTH WAR LLAEQIYRASEI+RGS YHKE Sbjct: 63 AYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 189
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|922866606|gb|KOO33429.1| (ribosomal RNA large subunit methyltransferase h [Chrysochromulina sp. CCMP291]) HSP 1 Score: 139.043 bits (349), Expect = 6.526e-38 Identity = 76/147 (51.70%), Postives = 99/147 (67.35%), Query Frame = 0 Query: 69 CGLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAK-EKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASK-ELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213 CG +VTI+ GK E +L A YT RLR V+ + VW + D+ LEA +++ + A I LDE G Q +S+E + LE GG+R++ IGGA+GLPP L+A L SLSRLTFTHQ AR+LL EQIYRA+EI+RGSGYHK+ Sbjct: 48 CGPRVTIYSVGKTK--EAWLQTAIELYTTRLRSVVDIDCVWVRDDAALEAQVSRADSAGCIILDERGPQCTSVEFTSRFFDALEAGGSRVTFFIGGADGLPPALKADPGRLLSLSRLTFTHQMARLLLIEQIYRATEIRRGSGYHKD 192
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|219116897|ref|XP_002179243.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409134|gb|EEC49066.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 137.887 bits (346), Expect = 2.135e-37 Identity = 74/152 (48.68%), Postives = 96/152 (63.16%), Query Frame = 0 Query: 70 GLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPV-LGLTTVWHKTDSELEAAIAKE---KAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKE-----LWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHK 212 GL+ TI I G++SG E +L DA Y RL+P + + T WHK D L + + PV+ LD GK+ +S + D YK +E GG+R+ IGGAEGLP LRA L SLS LTFTHQ+AR++L EQIYRASEI++G+GYHK Sbjct: 45 GLKTTIRIVGRKSGSESWLEDACSMYETRLKPANIDVQTEWHKNDQSLTKGVQSDYVRNVPVVMLDPRGKRFTSEQFTDDFYKWMEIGGSRMVFCIGGAEGLPADLRAPLSGHKPILVSLSNLTFTHQFARLVLIEQIYRASEIRKGTGYHK 196
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|551605042|ref|XP_005783958.1| (hypothetical protein EMIHUDRAFT_72312 [Emiliania huxleyi CCMP1516] >gi|485636996|gb|EOD31529.1| hypothetical protein EMIHUDRAFT_72312 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 130.183 bits (326), Expect = 5.844e-35 Identity = 70/143 (48.95%), Postives = 94/143 (65.73%), Query Frame = 0 Query: 72 QVTIHIRGKRSGGEEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKE-LWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213 +V I GK E ++ A YT RLR +L + T + K D+ L AA+ K V+ LDE GKQ +S+E A+ L+ +L++GG+RLS IGGA GLP L+ + L SL LTF HQ AR+LL EQIYRA+EI++GSGYHK+ Sbjct: 4 RVNIVSVGKAGRDEAWVTSAIDVYTTRLRSILDVQTTFVKDDTALTAAVRKSSGGVLVLDERGKQCTSVEFAERLFTQLDDGGSRLSFFIGGAAGLPDALKQDRSILLSLGPLTFPHQVARLLLVEQIYRATEIRKGSGYHKD 146
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|980609187|ref|WP_059359347.1| (50S rRNA methyltransferase [Parachlamydia acanthamoebae]) HSP 1 Score: 127.872 bits (320), Expect = 3.791e-34 Identity = 69/128 (53.91%), Postives = 89/128 (69.53%), Query Frame = 0 Query: 85 EEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHK 212 E +L+ A EY KRL+ V + VW K DS+L A +++E VICLD GK SS + + L ++LEEGG+RL+ VIGGA+GLP L+ +KE SLS LTFTHQ R++L EQIYRA EI +GS YHK Sbjct: 14 ETWLHAAIEEYQKRLQGVAEIEWVWAKDDSQLVALVSREPL-VICLDPNGKVFSSEQFSTFLMRKLEEGGSRLAFVIGGADGLPASLKQNKEAISLSLLTFTHQITRLVLIEQIYRALEIAKGSRYHK 140
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|493383790|ref|WP_006340038.1| (50S rRNA methyltransferase [Parachlamydia acanthamoebae] >gi|281500280|gb|EFB42560.1| hypothetical protein pah_c004o052 [Parachlamydia acanthamoebae str. Hall's coccus] >gi|336480370|emb|CCB86968.1| ribosomal RNA large subunit methyltransferase H [Parachlamydia acanthamoebae UV-7] >gi|742146391|gb|KIA77323.1| Ribosomal RNA large subunit methyltransferase H [Parachlamydia acanthamoebae]) HSP 1 Score: 125.946 bits (315), Expect = 1.905e-33 Identity = 68/128 (53.12%), Postives = 88/128 (68.75%), Query Frame = 0 Query: 85 EEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHK 212 E +L+ A EY KRL+ V + VW K D +L A +++E VICLD GK SS + + L ++LEEGG+RL+ VIGGA+GLP L+ +KE SLS LTFTHQ R++L EQIYRA EI +GS YHK Sbjct: 14 ETWLHAAIEEYQKRLQGVAEIEWVWAKDDPQLVALVSREPL-VICLDPNGKVFSSEQFSTFLMRKLEEGGSRLAFVIGGADGLPASLKQNKEAISLSLLTFTHQITRLVLIEQIYRALEIAKGSRYHK 140
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|1057062475|ref|WP_068468427.1| (50S rRNA methyltransferase [Parachlamydia sp. C2]) HSP 1 Score: 125.176 bits (313), Expect = 3.935e-33 Identity = 65/128 (50.78%), Postives = 89/128 (69.53%), Query Frame = 0 Query: 85 EEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHK 212 E++L DA+ EY KRLRP++ + W K ++L A+++A +ICLD GK L+S + A L ++ G+RL+LVIGGAEGLP L+ +L SLS LTFTHQ R++L EQIYRA+EI +GS YHK Sbjct: 14 EKWLEDAFDEYVKRLRPIIQVECQWAKDSAQL-LEWAQKEAHLICLDPAGKLLTSEQFAAFLESSWQKSGSRLTLVIGGAEGLPTELKQQGQLISLSPLTFTHQITRLVLIEQIYRATEINKGSQYHK 140
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|1072237470|gb|OEU22197.1| (DUF163-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 124.79 bits (312), Expect = 2.566e-32 Identity = 76/157 (48.41%), Postives = 101/157 (64.33%), Query Frame = 0 Query: 70 GLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPV-LGLTTVWHKTDSEL----EAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLR----ASKE-----LWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHK 212 G++V I I G++S E +L + Y KRLRP + + T WHK + L E +K VICLD GKQ +S +Y+ L+EGG+RLS +IGGAEGLP L+ +SK+ + SLS LTFTHQ+AR+LL EQIYRA+EI++GSGYHK Sbjct: 38 GMKVNIRIVGRKSS-EPWLEEGVDMYEKRLRPSNVEIETTWHKDNVALMKGYEMDCSKNYK-VICLDPKGKQPTSEVFTTNMYQWLDEGGSRLSFIIGGAEGLPNELKYPTASSKKISAPIMISLSSLTFTHQFARLLLIEQIYRATEIQKGSGYHK 192
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|768712726|ref|WP_044882104.1| (50S rRNA methyltransferase [Neochlamydia sp. EPS4] >gi|742765072|gb|KIC74273.1| Ribosomal RNA large subunit methyltransferase H [Neochlamydia sp. EPS4]) HSP 1 Score: 123.25 bits (308), Expect = 2.761e-32 Identity = 66/128 (51.56%), Postives = 85/128 (66.41%), Query Frame = 0 Query: 85 EEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHK 212 EE+LNDA EY KRL PVL V K +++L+ I+KEK VICLD G+ L S + + L + EGG+RL+LVIGGA GLP ++ S SLS LT THQ R++L EQ+YRA EI +G+ YHK Sbjct: 14 EEWLNDAIQEYVKRLSPVLKFEFVEAKNNAQLQELISKEKR-VICLDAAGQLLDSEKFSSFLQVQFIEGGSRLTLVIGGASGLPETIKLSYPCLSLSPLTMTHQIIRLVLIEQVYRAFEIAKGTPYHK 140 The following BLAST results are available for this feature:
BLAST of EWM22458.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|