EWM22458.1, cds8175 (CDS) Nannochloropsis gaditana

Overview
NameEWM22458.1
Unique Namecds8175
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037248.1:69960..70024 +
Alignment locationKK037248.1:70216..70607 +
Alignment locationKK037248.1:70695..70879 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22458.1
Productribosomal rna large subunit methyltransferase h
Orig transcript idgnl|cribi|Naga_100011g12.3458.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037248.1supercontigKK037248.1:69960..70024 +
KK037248.1supercontigKK037248.1:70216..70607 +
KK037248.1supercontigKK037248.1:70695..70879 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008168methyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR003742SPOUT_MeTrfase
IPR029026tRNA_m1G_MTases_N
Homology
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|553179898|ref|XP_005852783.1| (ribosomal rna large subunit methyltransferase h [Nannochloropsis gaditana CCMP526] >gi|422295753|gb|EKU23052.1| ribosomal rna large subunit methyltransferase h [Nannochloropsis gaditana CCMP526] >gi|585102964|gb|EWM22458.1| ribosomal rna large subunit methyltransferase h [Nannochloropsis gaditana])

HSP 1 Score: 437.573 bits (1124), Expect = 2.346e-155
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
Query:    1 MARIEELTNGRGTSRMETIRIRFWTAFSVLFFLNFVQSNMFFAFSHTRYCRRLVRSPTFTHAFRVTPACGLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213
            MARIEELTNGRGTSRMETIRIRFWTAFSVLFFLNFVQSNMFFAFSHTRYCRRLVRSPTFTHAFRVTPACGLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE
Sbjct:    1 MARIEELTNGRGTSRMETIRIRFWTAFSVLFFLNFVQSNMFFAFSHTRYCRRLVRSPTFTHAFRVTPACGLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213          
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|298705608|emb|CBJ28859.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 167.162 bits (422), Expect = 7.700e-49
Identity = 80/127 (62.99%), Postives = 96/127 (75.59%), Query Frame = 0
Query:   91 AYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKE----LWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213
            AY EY KRLRPVL L T WHKTD +LEAA+ K+   V+CLDEGG+Q++S   +D L+ +LEEGG+RL+ V+GGAEGLPP L+          SLS +TFTH WAR LLAEQIYRASEI+RGS YHKE
Sbjct:   63 AYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEGGSRLTFVVGGAEGLPPGLKQKPPHGGAKLSLSSMTFTHLWARALLAEQIYRASEIRRGSKYHKE 189          
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|922866606|gb|KOO33429.1| (ribosomal RNA large subunit methyltransferase h [Chrysochromulina sp. CCMP291])

HSP 1 Score: 139.043 bits (349), Expect = 6.526e-38
Identity = 76/147 (51.70%), Postives = 99/147 (67.35%), Query Frame = 0
Query:   69 CGLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAK-EKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASK-ELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213
            CG +VTI+  GK    E +L  A   YT RLR V+ +  VW + D+ LEA +++ + A  I LDE G Q +S+E     +  LE GG+R++  IGGA+GLPP L+A    L SLSRLTFTHQ AR+LL EQIYRA+EI+RGSGYHK+
Sbjct:   48 CGPRVTIYSVGKTK--EAWLQTAIELYTTRLRSVVDIDCVWVRDDAALEAQVSRADSAGCIILDERGPQCTSVEFTSRFFDALEAGGSRVTFFIGGADGLPPALKADPGRLLSLSRLTFTHQMARLLLIEQIYRATEIRRGSGYHKD 192          
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|219116897|ref|XP_002179243.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409134|gb|EEC49066.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 137.887 bits (346), Expect = 2.135e-37
Identity = 74/152 (48.68%), Postives = 96/152 (63.16%), Query Frame = 0
Query:   70 GLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPV-LGLTTVWHKTDSELEAAIAKE---KAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKE-----LWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHK 212
            GL+ TI I G++SG E +L DA   Y  RL+P  + + T WHK D  L   +  +     PV+ LD  GK+ +S +  D  YK +E GG+R+   IGGAEGLP  LRA        L SLS LTFTHQ+AR++L EQIYRASEI++G+GYHK
Sbjct:   45 GLKTTIRIVGRKSGSESWLEDACSMYETRLKPANIDVQTEWHKNDQSLTKGVQSDYVRNVPVVMLDPRGKRFTSEQFTDDFYKWMEIGGSRMVFCIGGAEGLPADLRAPLSGHKPILVSLSNLTFTHQFARLVLIEQIYRASEIRKGTGYHK 196          
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|551605042|ref|XP_005783958.1| (hypothetical protein EMIHUDRAFT_72312 [Emiliania huxleyi CCMP1516] >gi|485636996|gb|EOD31529.1| hypothetical protein EMIHUDRAFT_72312 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 130.183 bits (326), Expect = 5.844e-35
Identity = 70/143 (48.95%), Postives = 94/143 (65.73%), Query Frame = 0
Query:   72 QVTIHIRGKRSGGEEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKE-LWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHKE 213
            +V I   GK    E ++  A   YT RLR +L + T + K D+ L AA+ K    V+ LDE GKQ +S+E A+ L+ +L++GG+RLS  IGGA GLP  L+  +  L SL  LTF HQ AR+LL EQIYRA+EI++GSGYHK+
Sbjct:    4 RVNIVSVGKAGRDEAWVTSAIDVYTTRLRSILDVQTTFVKDDTALTAAVRKSSGGVLVLDERGKQCTSVEFAERLFTQLDDGGSRLSFFIGGAAGLPDALKQDRSILLSLGPLTFPHQVARLLLVEQIYRATEIRKGSGYHKD 146          
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|980609187|ref|WP_059359347.1| (50S rRNA methyltransferase [Parachlamydia acanthamoebae])

HSP 1 Score: 127.872 bits (320), Expect = 3.791e-34
Identity = 69/128 (53.91%), Postives = 89/128 (69.53%), Query Frame = 0
Query:   85 EEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHK 212
            E +L+ A  EY KRL+ V  +  VW K DS+L A +++E   VICLD  GK  SS + +  L ++LEEGG+RL+ VIGGA+GLP  L+ +KE  SLS LTFTHQ  R++L EQIYRA EI +GS YHK
Sbjct:   14 ETWLHAAIEEYQKRLQGVAEIEWVWAKDDSQLVALVSREPL-VICLDPNGKVFSSEQFSTFLMRKLEEGGSRLAFVIGGADGLPASLKQNKEAISLSLLTFTHQITRLVLIEQIYRALEIAKGSRYHK 140          
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|493383790|ref|WP_006340038.1| (50S rRNA methyltransferase [Parachlamydia acanthamoebae] >gi|281500280|gb|EFB42560.1| hypothetical protein pah_c004o052 [Parachlamydia acanthamoebae str. Hall's coccus] >gi|336480370|emb|CCB86968.1| ribosomal RNA large subunit methyltransferase H [Parachlamydia acanthamoebae UV-7] >gi|742146391|gb|KIA77323.1| Ribosomal RNA large subunit methyltransferase H [Parachlamydia acanthamoebae])

HSP 1 Score: 125.946 bits (315), Expect = 1.905e-33
Identity = 68/128 (53.12%), Postives = 88/128 (68.75%), Query Frame = 0
Query:   85 EEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHK 212
            E +L+ A  EY KRL+ V  +  VW K D +L A +++E   VICLD  GK  SS + +  L ++LEEGG+RL+ VIGGA+GLP  L+ +KE  SLS LTFTHQ  R++L EQIYRA EI +GS YHK
Sbjct:   14 ETWLHAAIEEYQKRLQGVAEIEWVWAKDDPQLVALVSREPL-VICLDPNGKVFSSEQFSTFLMRKLEEGGSRLAFVIGGADGLPASLKQNKEAISLSLLTFTHQITRLVLIEQIYRALEIAKGSRYHK 140          
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|1057062475|ref|WP_068468427.1| (50S rRNA methyltransferase [Parachlamydia sp. C2])

HSP 1 Score: 125.176 bits (313), Expect = 3.935e-33
Identity = 65/128 (50.78%), Postives = 89/128 (69.53%), Query Frame = 0
Query:   85 EEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHK 212
            E++L DA+ EY KRLRP++ +   W K  ++L    A+++A +ICLD  GK L+S + A  L    ++ G+RL+LVIGGAEGLP  L+   +L SLS LTFTHQ  R++L EQIYRA+EI +GS YHK
Sbjct:   14 EKWLEDAFDEYVKRLRPIIQVECQWAKDSAQL-LEWAQKEAHLICLDPAGKLLTSEQFAAFLESSWQKSGSRLTLVIGGAEGLPTELKQQGQLISLSPLTFTHQITRLVLIEQIYRATEINKGSQYHK 140          
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|1072237470|gb|OEU22197.1| (DUF163-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 124.79 bits (312), Expect = 2.566e-32
Identity = 76/157 (48.41%), Postives = 101/157 (64.33%), Query Frame = 0
Query:   70 GLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPV-LGLTTVWHKTDSEL----EAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLR----ASKE-----LWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHK 212
            G++V I I G++S  E +L +    Y KRLRP  + + T WHK +  L    E   +K    VICLD  GKQ +S      +Y+ L+EGG+RLS +IGGAEGLP  L+    +SK+     + SLS LTFTHQ+AR+LL EQIYRA+EI++GSGYHK
Sbjct:   38 GMKVNIRIVGRKSS-EPWLEEGVDMYEKRLRPSNVEIETTWHKDNVALMKGYEMDCSKNYK-VICLDPKGKQPTSEVFTTNMYQWLDEGGSRLSFIIGGAEGLPNELKYPTASSKKISAPIMISLSSLTFTHQFARLLLIEQIYRATEIQKGSGYHK 192          
BLAST of EWM22458.1 vs. NCBI_GenBank
Match: gi|768712726|ref|WP_044882104.1| (50S rRNA methyltransferase [Neochlamydia sp. EPS4] >gi|742765072|gb|KIC74273.1| Ribosomal RNA large subunit methyltransferase H [Neochlamydia sp. EPS4])

HSP 1 Score: 123.25 bits (308), Expect = 2.761e-32
Identity = 66/128 (51.56%), Postives = 85/128 (66.41%), Query Frame = 0
Query:   85 EEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYRASEIKRGSGYHK 212
            EE+LNDA  EY KRL PVL    V  K +++L+  I+KEK  VICLD  G+ L S + +  L  +  EGG+RL+LVIGGA GLP  ++ S    SLS LT THQ  R++L EQ+YRA EI +G+ YHK
Sbjct:   14 EEWLNDAIQEYVKRLSPVLKFEFVEAKNNAQLQELISKEKR-VICLDAAGQLLDSEKFSSFLQVQFIEGGSRLTLVIGGASGLPETIKLSYPCLSLSPLTMTHQIIRLVLIEQVYRAFEIAKGTPYHK 140          
The following BLAST results are available for this feature:
BLAST of EWM22458.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553179898|ref|XP_005852783.1|2.346e-155100.00ribosomal rna large subunit methyltransferase h [N... [more]
gi|298705608|emb|CBJ28859.1|7.700e-4962.99conserved unknown protein [Ectocarpus siliculosus][more]
gi|922866606|gb|KOO33429.1|6.526e-3851.70ribosomal RNA large subunit methyltransferase h [C... [more]
gi|219116897|ref|XP_002179243.1|2.135e-3748.68predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|551605042|ref|XP_005783958.1|5.844e-3548.95hypothetical protein EMIHUDRAFT_72312 [Emiliania h... [more]
gi|980609187|ref|WP_059359347.1|3.791e-3453.9150S rRNA methyltransferase [Parachlamydia acantham... [more]
gi|493383790|ref|WP_006340038.1|1.905e-3353.1350S rRNA methyltransferase [Parachlamydia acantham... [more]
gi|1057062475|ref|WP_068468427.1|3.935e-3350.7850S rRNA methyltransferase [Parachlamydia sp. C2][more]
gi|1072237470|gb|OEU22197.1|2.566e-3248.41DUF163-domain-containing protein [Fragilariopsis c... [more]
gi|768712726|ref|WP_044882104.1|2.761e-3251.5650S rRNA methyltransferase [Neochlamydia sp. EPS4]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8199rna8199Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications