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Properties
| Property Name | Value |
|---|
| Product | ribosomal rna large subunit methyltransferase h |
| Orig transcript id | gnl|cribi|Naga_100011g12.3458.mrna |
| Orig protein id | gnl|cribi|Naga_100011g12.3458 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037248.1 | supercontig | KK037248.1:69853..71010 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8199 ID=rna8199|Name=rna8199|organism=Nannochloropsis gaditana|type=mRNA|length=2000bp
CGAGTCCAAGTCATATAGCAACTAAGCATATTGCTCCTTGGTACAGTAAG
ACGATGCCTGAGATGATGTTTAATCGGCCACATAAGCCCCGCGTGGGACA
TTTTTCCCATAAAGAGAAAGGGGGCGGGTTGAAGATACTAGATGGCTCCT
CGCTGCCTCCCTGGTGATGCCGTCATTGATCAGGGGGATTTCGCAAGGGA
AATACATCCATTAATAATCCAGGAAACGTACTGCAGCGCAAATCTCAGGT
GGCAAGATATTACGAGAAAGCATTTGCTGGGAATAATTCATAGTCATGCT
CACTTAGCATTTCCCATTTTTGTGCTTTTCCTGCTCACTGCGCTACCCTA
CTTTACAGCACACATAATTAATTCCTCCTCTCAGTGCCATGAAACCATCA
TCAAGAAGAAAACAGCCAGCTCGTGTAAGCGTATCTATACCACGAGTCCC
CTTCTTTTCTGCCGCCATCGCGTATGTCGTGGTCCTCTGCATACCGGAGG
CCGCCCCCTTTGTCGTTCCAAGGCCGGCTATCCCGCCACTACTCGTTCCG
CAAGTCACACCTGTTCGTGTCACGCGTGCCTCCGCTTCCACGCCTTTCTC
CTCGAGCATGCGGCGACAGGCGCACACGGTTTATTCCCCGCCCGGCTGGG
ACCGGGAAATGTATCGGCCCCCTGACGACGTGCTCTTCGAATGGCAAGAG
CTGGTGTGCTGCCTCAAATTCATGGAGGAGAAGGAGGTTAACGCCGGAAT
GCTGGCACCAGAGACCCGGGACATGATGATTGAGTACGCCGACGCGCTTA
TAGCGGGGGGCTCGCCTGTCCGGACTCTGGAGGGGTTGGCTGAGGCGATG
ATGGGGAGGTGGAAGCTGGCCTTCACCACCGAGGAGAGGTATAAGATCCT
GCCTCCCGGCACCCGGGTGTACTACCACATACACCGTGACGGCCGTCTGG
AAAATGTCATGAAATTCAAAGACAAGTACTGGGACAGCCTAATCTCCTCG
GCCACCTACAACCTGACGCCGCAGGGGCGCCTCCTCTTCGAGTTCTCCTC
GAATCGGGTCCACATCAACAACCCCTTTCAGGCACGCGCGCAATGGAAGA
TTCCTTTGCCTCCTAACGTCGGGAACACGGGCTCGGCCTTTGCGGACGTG
AGCTACATGGACGGGGTCCTGTGGATCGAGAAGATCCGGGATCCTGGAAC
GGAGCAGGTCTTCGTGACCATCTACGAGTACCAGGGGCCGATCGAAGGGG
AGGAGCGGACGCCTTCGCCCTCCCTCTCCCTTTCCTCCCCGCCTTCCTCG
TCCTCTGCGTCCTCCGCCGGCTCTCTAATAGCCTTTCTGGAGGGTCTGGA
GAAGGAAGAGCAGGAGGAGCTCGCCGAGGAGAGGCGGAACGAGGGGGAGA
GGGAGGGGGAGACCTCTCCTCCTCCCGCTGACCCCTCGGCCTCTGGCGAC
CCTAGTGTGGCTCCCTCCTCCCCCCCTCCCTCCCCCTCCTCTTCTTCCTC
CTCCCCTTCCTCCCGAGTGTCTGCTTGATGAGGGGGAGGGAGAAAGGACC
TCTGCCAAGGGCCTGAGAGGGCGTGAGGGTAGGGTGCGACGGACGGAGAG
AGCGGGCGACTTAAATGCAAGCGAACACGAAGAAGGCAAATCAAAGAAAG
AGGAAACGCACAACGTACGAGGAGGAACTTCTCTGTATGATTAGAAGGTC
TCGCTCTCACCCCCTGCATCCCTCAATTCGCCGTCCCACCGGGGCATCCC
CCCCCCCGCCCTTCCCCCACACCCGCCAGCCCACCGCCTGCATGATCTGT
GCTTTTGTCTCAGTAGCCTATCCCGCATGCCTTCGAGTCCTGCCCCGCCG
ATACCATCTTGGATCCTGTCTTCCGGCCCATGCGGGAACGAGGGGGGTGA
GGACGGCTAGGGTGCCTGCTCTTGTCGATGCTGTTGTTGTTGTTGCTGTT
GCTGCTGCTGCTGCTGCTGTCGGTGGTGTTGTTGCTGCTGTTGGGGGTGA back to topprotein sequence of rna8199 >rna8199-protein ID=rna8199-protein|Name=rna8199|organism=Nannochloropsis gaditana|type=polypeptide|length=213bp
MARIEELTNGRGTSRMETIRIRFWTAFSVLFFLNFVQSNMFFAFSHTRYC
RRLVRSPTFTHAFRVTPACGLQVTIHIRGKRSGGEEFLNDAYLEYTKRLR
PVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRL
EEGGARLSLVIGGAEGLPPRLRASKELWSLSRLTFTHQWARVLLAEQIYR
ASEIKRGSGYHKE back to topmRNA from alignment at KK037248.1:69853..71010+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8199 ID=rna8199|Name=rna8199|organism=Nannochloropsis gaditana|type=mRNA|length=1158bp|location=Sequence derived from alignment at KK037248.1:69853..71010+ (Nannochloropsis gaditana)
AAAATGTCCCACGCGGGGCTTATGTGGCCGATTAAACATCATCTCAGGCA
TCGTCTTACTGTACCAAGGAGCAATATGCTTAGTTGCTATATGACTTGGA
CTCGCATATGGCCCGCATCGAGGAACTGACCAATGGGCGAGGAACAAGCA
GGATGGAAACTATCAGAATACGGTACGTGCCAAAGCTATATGGTGTTTAA
ATATTATTTTTCGAGGAAAGATCTACAAGCTTGTGAAGGAAATAATTATG
TGCTTGGTCGTCTGTGTTACAAGGTGTCTAATGTTGCACCAGTGAGGACG
AGGTTGTAAGTGTGGCAGCGAGCACTCCTATATGATGTCTGTattacctt
cctcccttatcAGGTTTTGGACAGCGTTCAgcgtcctttttttcttgaaC
TTCGTGCAAAGTAACATGTTCTTTGCATTTTCACATACGCGGTATTGTCG
CCGGCTGGTTCGCAGCCCTACCTTTACACACGCGTTCCGGGTCACCCCTG
CGTGCGGCTTGCAAGTTACCATCCACATCCGAGGGAAGCgctcggggggg
gaagagttCTTGAACGACGCCTACCTTGAGTACACCAAGCGCTTACGACC
CGTCTTAGGCCTCACGACTGTATGGCACAAGACTGACTCGGAGCTTGAAG
CAGCAATCGCAAAGGAGAAAGCTCCTGTAATTTGtttggacgagggagga
aagcaactATCGTCCATGGAACTTGCGGATATCCTCTACAAGCGTCTAGA
AGAAGGTGAGAATTGTTTTAAAAGCTCTTTTGTCCTGAAAAATCCTTCTT
AAATCTGATCATGAAGTACGTTTCTTTCCCGTGGCTGCACAGGCGGGGCG
CGCCTGTCTCTCGTCATaggaggagcggagggcTTACCGCCTCGGTTGCG
GGCCAGCAAGGAGCTTTGGAGCCTTTCGCGTTTGACGTTTACGCACCAGT
GGGCCCGTGTTCTCCTTGCCGAGCAGATTTACAGGGCCTCGGAGAtaaag
agagggagcgggtaCCACAAAGAGTAAGCATGGACTGCGGGGGGAGAGGT
TTGGTCGGCAAAAAGCTGAAGTGGGCGTTAGGGGGAATGTGTCAGCATCG
ACTGTATTTAAAGAAACAAACGGGTGGAAAAAGTAAGAAAATACAGGAGA
TAGAGAGA back to topCoding sequence (CDS) from alignment at KK037248.1:69853..71010+ >rna8199 ID=rna8199|Name=rna8199|organism=Nannochloropsis gaditana|type=CDS|length=1926bp|location=Sequence derived from alignment at KK037248.1:69853..71010+ (Nannochloropsis gaditana)
ATGGCCCGCATCGAGGAACTGACCAATGGGCGAGGAACAAGCAGGATGGA
AACTATCAGAATACGGTTTTGGACAGCGTTCAgcgtcctttttttcttga
aCTTCGTGCAAAGTAACATGTTCTTTGCATTTTCACATACGCGGTATTGT
CGCCGGCTGGTTCGCAGCCCTACCTTTACACACGCGTTCCGGGTCACCCC
TGCGTGCGGCTTGCAAGTTACCATCCACATCCGAGGGAAGCgctcggggg
gggaagagttCTTGAACGACGCCTACCTTGAGTACACCAAGCGCTTACGA
CCCGTCTTAGGCCTCACGACTGTATGGCACAAGACTGACTCGGAGCTTGA
AGCAGCAATCGCAAAGGAGAAAGCTCCTGTAATTTGtttggacgagggag
gaaagcaactATCGTCCATGGAACTTGCGGATATCCTCTACAAGCGTCTA
GAAGAAGGCGGGGCGCGCCTGTCTCTCGTCATaggaggagcggagggcTT
ACCGCCTCGGTTGCGGGCCAGCAAGGAGCTTTGGAGCCTTTCGCGTTTGA
CGTTTACGCACCAGTGGGCCCGTGTTCTCCTTGCCGAGCAGATTTACAGG
GCCTCGGAGAtaaagagagggagcgggtaCCACAAAGAGTAAATGGCCCG
CATCGAGGAACTGACCAATGGGCGAGGAACAAGCAGGATGGAAACTATCA
GAATACGGTTTTGGACAGCGTTCAgcgtcctttttttcttgaaCTTCGTG
CAAAGTAACATGTTCTTTGCATTTTCACATACGCGGTATTGTCGCCGGCT
GGTTCGCAGCCCTACCTTTACACACGCGTTCCGGGTCACCCCTGCGTGCG
GCTTGCAAGTTACCATCCACATCCGAGGGAAGCgctcggggggggaagag
ttCTTGAACGACGCCTACCTTGAGTACACCAAGCGCTTACGACCCGTCTT
AGGCCTCACGACTGTATGGCACAAGACTGACTCGGAGCTTGAAGCAGCAA
TCGCAAAGGAGAAAGCTCCTGTAATTTGtttggacgagggaggaaagcaa
ctATCGTCCATGGAACTTGCGGATATCCTCTACAAGCGTCTAGAAGAAGG
CGGGGCGCGCCTGTCTCTCGTCATaggaggagcggagggcTTACCGCCTC
GGTTGCGGGCCAGCAAGGAGCTTTGGAGCCTTTCGCGTTTGACGTTTACG
CACCAGTGGGCCCGTGTTCTCCTTGCCGAGCAGATTTACAGGGCCTCGGA
GAtaaagagagggagcgggtaCCACAAAGAGTAAATGGCCCGCATCGAGG
AACTGACCAATGGGCGAGGAACAAGCAGGATGGAAACTATCAGAATACGG
TTTTGGACAGCGTTCAgcgtcctttttttcttgaaCTTCGTGCAAAGTAA
CATGTTCTTTGCATTTTCACATACGCGGTATTGTCGCCGGCTGGTTCGCA
GCCCTACCTTTACACACGCGTTCCGGGTCACCCCTGCGTGCGGCTTGCAA
GTTACCATCCACATCCGAGGGAAGCgctcggggggggaagagttCTTGAA
CGACGCCTACCTTGAGTACACCAAGCGCTTACGACCCGTCTTAGGCCTCA
CGACTGTATGGCACAAGACTGACTCGGAGCTTGAAGCAGCAATCGCAAAG
GAGAAAGCTCCTGTAATTTGtttggacgagggaggaaagcaactATCGTC
CATGGAACTTGCGGATATCCTCTACAAGCGTCTAGAAGAAGGCGGGGCGC
GCCTGTCTCTCGTCATaggaggagcggagggcTTACCGCCTCGGTTGCGG
GCCAGCAAGGAGCTTTGGAGCCTTTCGCGTTTGACGTTTACGCACCAGTG
GGCCCGTGTTCTCCTTGCCGAGCAGATTTACAGGGCCTCGGAGAtaaaga
gagggagcgggtaCCACAAAGAGTAA back to top
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