EWM22513.1, cds8160 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|585103024|gb|EWM22513.1| (cop9 signalosome complex subunit 4 [Nannochloropsis gaditana]) HSP 1 Score: 267.314 bits (682), Expect = 1.740e-90 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 Query: 1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMPGVLIGE 136 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMPGVLIGE Sbjct: 1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMPGVLIGE 136
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|545376300|ref|XP_005652253.1| (hypothetical protein COCSUDRAFT_45959 [Coccomyxa subellipsoidea C-169] >gi|384254235|gb|EIE27709.1| hypothetical protein COCSUDRAFT_45959 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 127.872 bits (320), Expect = 1.196e-32 Identity = 61/123 (49.59%), Postives = 84/123 (68.29%), Query Frame = 0 Query: 4 FAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAG 126 FAE LQ HQ+ T+DG T+LE+A++EHN+ AAS++Y NI +ELG+LL + AE+VA+RMI EGRL+G IDQ +GLLHF+ EG L+ WDE+IA C ++N+IL+ A Sbjct: 282 FAEGLQAHQKAVTADGTTVLERAVVEHNLAAASRLYTNIFFAELGQLLGVPPASAEKVASRMITEGRLQGSIDQVDGLLHFDSDTEG-------------LKQWDEQIASVCNQLNSILDSAA 391
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|1009134725|ref|XP_015884603.1| (PREDICTED: COP9 signalosome complex subunit 4 [Ziziphus jujuba]) HSP 1 Score: 124.405 bits (311), Expect = 2.501e-31 Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = 0 Query: 4 FAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGK 127 FAEVL+ HQ+ D FT+L++A+IEHN+++ASK+Y NIR ELG LL IA +AE++A+RMI E R++G IDQ + ++HFE+ E LQ WD++I G CQ +N +L+ K Sbjct: 280 FAEVLKAHQKALLPDNFTVLDRAMIEHNLLSASKLYTNIRFDELGTLLGIAPHKAEKIASRMIYEDRMRGSIDQVQAVIHFEDDTEE-------------LQQWDQQIVGLCQALNDVLDSMAK 390
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|298713145|emb|CBJ26901.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 124.79 bits (312), Expect = 2.997e-31 Identity = 65/133 (48.87%), Postives = 85/133 (63.91%), Query Frame = 0 Query: 1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMPGVL 133 M F E L +HQ+ T++G I E+A++EHN+VA++++Y+N+ ELG LL+I ++AERVAARMI EGRL+G IDQ EGLL FE G E LQNWDER+ CQ+VN E G P VL Sbjct: 289 MEAFEESLMDHQKAITAEGLPIPERAVMEHNMVASTRIYENVSFKELGTLLQIPCEQAERVAARMITEGRLRGTIDQVEGLLQFE---------GDHDE----LQNWDERVNILCQKVNNCCETIGNRFPHVL 408
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|1026044837|ref|XP_016568599.1| (PREDICTED: COP9 signalosome complex subunit 4-like [Capsicum annuum]) HSP 1 Score: 122.865 bits (307), Expect = 7.425e-31 Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = 0 Query: 4 FAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGK 127 FAE L+ HQ+ D FT+L++A+IEHN+++ASK+Y NI +ELG LL I +AE++A+RMI E R++G IDQ EG++HFE+ EG LQ WD++I G CQ +N +L+ K Sbjct: 280 FAEELKPHQQALLPDNFTVLDRAMIEHNLLSASKLYTNISFNELGTLLGIPPPKAEKIASRMIFEDRMRGSIDQVEGVIHFEDDTEG-------------LQQWDQQIMGLCQALNDVLDSMAK 390
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|557332417|ref|XP_006039015.1| (PREDICTED: COP9 signalosome complex subunit 4, partial [Alligator sinensis]) HSP 1 Score: 117.087 bits (292), Expect = 1.134e-30 Identity = 56/130 (43.08%), Postives = 86/130 (66.15%), Query Frame = 0 Query: 1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMP 130 + EFA +L HQ+ T+DG +IL++A+IEHN+++ASK+Y+NI ELG LL+I +AE++A++MI EGR+ G IDQ +G++HFE +E L WD++I C +VN +LE+ +T P Sbjct: 45 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-----SREA---------LPTWDKQIQSLCFQVNNLLEKISQTAP 160
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|1207836213|gb|OWK13716.1| (hypothetical protein Celaphus_00017337, partial [Cervus elaphus hippelaphus]) HSP 1 Score: 116.316 bits (290), Expect = 1.518e-30 Identity = 56/130 (43.08%), Postives = 86/130 (66.15%), Query Frame = 0 Query: 1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMP 130 + EFA +L HQ+ T+DG +IL++A+IEHN+++ASK+Y+NI ELG LL+I +AE++A++MI EGR+ G IDQ +G++HFE +E L WD++I C +VN +LE+ +T P Sbjct: 34 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-----TREA---------LPTWDKQIQSLCFQVNNLLEKISQTAP 149
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|667338647|ref|XP_008561625.1| (PREDICTED: COP9 signalosome complex subunit 4, partial [Galeopterus variegatus]) HSP 1 Score: 116.316 bits (290), Expect = 1.925e-30 Identity = 56/130 (43.08%), Postives = 86/130 (66.15%), Query Frame = 0 Query: 1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMP 130 + EFA +L HQ+ T+DG +IL++A+IEHN+++ASK+Y+NI ELG LL+I +AE++A++MI EGR+ G IDQ +G++HFE +E L WD++I C +VN +LE+ +T P Sbjct: 39 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-----TREA---------LPTWDKQIQSLCFQVNNLLEKISQTAP 154
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|465964543|gb|EMP30381.1| (COP9 signalosome complex subunit 4 [Chelonia mydas]) HSP 1 Score: 117.087 bits (292), Expect = 2.467e-30 Identity = 56/130 (43.08%), Postives = 87/130 (66.92%), Query Frame = 0 Query: 1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMP 130 + EFA +L HQ+ T+DG +IL++A+IEHN+++ASK+Y+NI ELG LL+I +AE++A++MI EGR+ G IDQ +G++HFE +E L WD++I C +VN +LE+ +T+P Sbjct: 69 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-----TREA---------LPTWDKQIQSLCFQVNNLLEKISQTVP 184
BLAST of EWM22513.1 vs. NCBI_GenBank
Match: gi|557332439|ref|XP_006039026.1| (PREDICTED: COP9 signalosome complex subunit 4-like [Alligator sinensis]) HSP 1 Score: 115.546 bits (288), Expect = 3.468e-30 Identity = 55/130 (42.31%), Postives = 85/130 (65.38%), Query Frame = 0 Query: 1 MGEFAEVLQEHQRVRTSDGFTILEKAIIEHNVVAASKVYDNIRISELGRLLKIAEDEAERVAARMIGEGRLKGCIDQTEGLLHFEEGGEGGKEGGKEGEAGVLLQNWDERIAGACQEVNAILEEAGKTMP 130 + EFA +L HQ+ T+DG +IL++A+IEHN+++ASK+Y+NI ELG LL+I +AE++A++MI E R+ G IDQ +G++HFE +E L WD++I C +VN +LE+ +T P Sbjct: 34 LQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITESRMNGFIDQIDGIVHFE-----SREA---------LPTWDKQIQSLCFQVNNLLEKISQTAP 149 The following BLAST results are available for this feature:
BLAST of EWM22513.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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