EWM22577.1, cds8094 (CDS) Nannochloropsis gaditana

Overview
NameEWM22577.1
Unique Namecds8094
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:611474..611920 +
Alignment locationKK037247.1:612091..613392 +

Link to JBrowse

Properties
Property NameValue
Start range611474
Start range.
Protein idEWM22577.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100401g3.1216.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:611474..611920 +
KK037247.1supercontigKK037247.1:612091..613392 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005509calcium ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
Homology
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BLAST of EWM22577.1 vs. NCBI_GenBank
Match: gi|585103137|gb|EWM22577.1| (hypothetical protein Naga_100401g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 1136.32 bits (2938), Expect = 0.000e+0
Identity = 582/582 (100.00%), Postives = 582/582 (100.00%), Query Frame = 0 
Query:    1 VRLGGVDTRCGLGFSVPLLRHCPSCPLIPSTSFFPLSLSPSLLPSLSPCLRSYGVFFSAQMIMGSGWVDQMPRTGFGTWFSLFYALAGSLLIYHALGDLASIPLTLRQSRFEAEVFAQWGDHLTEETLDSLSRRATEIAAVGASSPLRRLQQQLLLQKQRQEEGKRHEEPPSETGPVLPLSKPGQAPGQLSLEEEDLPADGALQAQPPSFFPPPPPRLPPFPASDPALPFLPRAPGVLEEGRAAGRGGGGSGQGGRGGGGGGGGGGGGEGGGEVLGHCHAGEEVPAVKRLPRDAPSPGAAASSLLSSSPSFLHPSPPPQAPAKVSASSSTSSIPTSSSTPPASSLYTRPMTTQASFPHPTSSLVSFLPSSSPGRHPKRTDAGGGGGRAGGGDGGGTKEVPKVPSSISREEFIISMMLLLGRVDMLHVREAQKVFDQLDKDKTGVLDEADVVRRVAQQTGLQYQASRYRRGGAGIPRGEGAARCERTGPIPRPNDRARGEGGGEGRGGAGADKEGRRGEWKGGVRVLAAEGGGKAYGPGALVLFVPCALYSDLLLLHTRVSRLCSPARAAVPAAGAGSAPTTA 582
            VRLGGVDTRCGLGFSVPLLRHCPSCPLIPSTSFFPLSLSPSLLPSLSPCLRSYGVFFSAQMIMGSGWVDQMPRTGFGTWFSLFYALAGSLLIYHALGDLASIPLTLRQSRFEAEVFAQWGDHLTEETLDSLSRRATEIAAVGASSPLRRLQQQLLLQKQRQEEGKRHEEPPSETGPVLPLSKPGQAPGQLSLEEEDLPADGALQAQPPSFFPPPPPRLPPFPASDPALPFLPRAPGVLEEGRAAGRGGGGSGQGGRGGGGGGGGGGGGEGGGEVLGHCHAGEEVPAVKRLPRDAPSPGAAASSLLSSSPSFLHPSPPPQAPAKVSASSSTSSIPTSSSTPPASSLYTRPMTTQASFPHPTSSLVSFLPSSSPGRHPKRTDAGGGGGRAGGGDGGGTKEVPKVPSSISREEFIISMMLLLGRVDMLHVREAQKVFDQLDKDKTGVLDEADVVRRVAQQTGLQYQASRYRRGGAGIPRGEGAARCERTGPIPRPNDRARGEGGGEGRGGAGADKEGRRGEWKGGVRVLAAEGGGKAYGPGALVLFVPCALYSDLLLLHTRVSRLCSPARAAVPAAGAGSAPTTA
Sbjct:    1 VRLGGVDTRCGLGFSVPLLRHCPSCPLIPSTSFFPLSLSPSLLPSLSPCLRSYGVFFSAQMIMGSGWVDQMPRTGFGTWFSLFYALAGSLLIYHALGDLASIPLTLRQSRFEAEVFAQWGDHLTEETLDSLSRRATEIAAVGASSPLRRLQQQLLLQKQRQEEGKRHEEPPSETGPVLPLSKPGQAPGQLSLEEEDLPADGALQAQPPSFFPPPPPRLPPFPASDPALPFLPRAPGVLEEGRAAGRGGGGSGQGGRGGGGGGGGGGGGEGGGEVLGHCHAGEEVPAVKRLPRDAPSPGAAASSLLSSSPSFLHPSPPPQAPAKVSASSSTSSIPTSSSTPPASSLYTRPMTTQASFPHPTSSLVSFLPSSSPGRHPKRTDAGGGGGRAGGGDGGGTKEVPKVPSSISREEFIISMMLLLGRVDMLHVREAQKVFDQLDKDKTGVLDEADVVRRVAQQTGLQYQASRYRRGGAGIPRGEGAARCERTGPIPRPNDRARGEGGGEGRGGAGADKEGRRGEWKGGVRVLAAEGGGKAYGPGALVLFVPCALYSDLLLLHTRVSRLCSPARAAVPAAGAGSAPTTA 582
The following BLAST results are available for this feature:
BLAST of EWM22577.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585103137|gb|EWM22577.1|0.000e+0100.00hypothetical protein Naga_100401g3, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8118rna8118Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications