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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100401g3.1216.mrna |
| Orig protein id | gnl|cribi|Naga_100401g3.1216 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:611474..614479 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8118 ID=rna8118|Name=rna8118|organism=Nannochloropsis gaditana|type=mRNA|length=1472bp
CGGTCAGCTCACCCCTTCCTCACAAACCTTTACGCAGGACTCTTCCCGTT
CTTTCGACATCATTTTTGAGACTCAGGTGCGCCAGTGGTGAAAGCGCTGG
ACTCGACGGCATCAAGATCCTTTATCACATCATGGGGGTGTAAAAAGGAG
ACGGAAAAAGGGGCATACATCCCTTTTCTGCGGCATTTCGGGTCTAGGTT
CATGTCCTAGGCCTTGCATTCTCAATTAAAATATCCAAGCCCGCGATGGA
GAGCGACCCACAGACGACGTTGCTCGATCCATTAAGTACATACGAGCCCA
AAGGCATTCATAATGGGGGAGGGTTGCAGACTGCACCCAGTACCTTCCCT
CAACATCCCCGATCCTTCCCGCCCACTCACCGCGAAACGGTCGTGCGGAA
ACAGCAGCGGCGGCGGCGTGGGCGTCCATGCGAGGATGCTGCCCATCCTG
CTTGGGCATGGCATGAAGATGAAGGTTTCGACTATTGCGAGGCTGGCGGG
GCTGAGGAAGGGGAAGGGACAGGCGAGAATTCATACTGGGGCCACGCTGA
AGAAGTAGACGAGGAGGCGAACAGGCGCGGGCGTGTTGCAGGATTGCTTG
GCGGTGTGAAGCCCTGGACGGCCAGTCTTTACCATGGCCCTGGCCTGTTT
TGTCTGTGGCGAAGGAGGAGAGGGAGGTGGGAAGGAAAGCCCGGGGCCCT
TGGTGTCGAGGAAGAGGAAGCCAAGGGGGCGGAGGTGGAGGAGGGGAAAA
TGAACGAAGCGGAAGAAGCAGGAAGGGAGGATGGGCAACCTCAGGAGGGG
CCGCGGTGGGCGTGGCCAGGCATGCGGGGAGGGGGGGAGAAACGGGTCCG
TTTCTCCCGAACCTCCGCCTCGAGTCTGCCTGAGCGGCCCTCCGCCTCGA
GTCTGCCTGAGCGGCCCTCCGCCGCGTCCTGGCAGGCCTTGCAACGGATG
TCAACCGTTTCCGTGGACTTTTTGAAGAAACAGGACCGGAGGCCCGTGCA
GATGGCCTGGGCCTTCTTCGTCGTGTACGTGCTGGCCGGCCTCTGGTACT
TCATGTTCTTCAAGGCCCTCGACTTCCACAACGCCCTCTTCCAGATCATC
AACAGCCTCAGCGCCGTCGGGTACGGCTATTTTTCCCCCAGCACGCCCAT
CGAGCAGGCCCTGACCGTCGTCTTCCTCTTCGTCGGGGTGGGCTTCATGG
GCTCGCTCATCGGGATCGTCGCCTCCTCCCGCCTGGATTTCCAGGAGGAC
GTGAAGAAGGAGTGGCTGGCCCGGCAGGAAGGGAAGGAGGGCGGGGGGGA
TGGCGGGGGGGAGGCTCTGGAGGAGGAGGAGGAGGAACCGGGCATGTCCC
TGATGAGGATACAAATGCAGCGGGCGCGGCAACGCGTGGTCTGGAATATT
GCGCGAATCATGCTGGCGATCCTGGCGGGGACGGTGGTGCTGGTCCCACT
CGAAGGGTGGACGTGGGGGTAG back to topprotein sequence of rna8118 >rna8118-protein ID=rna8118-protein|Name=rna8118|organism=Nannochloropsis gaditana|type=polypeptide|length=582bp
VRLGGVDTRCGLGFSVPLLRHCPSCPLIPSTSFFPLSLSPSLLPSLSPCL
RSYGVFFSAQMIMGSGWVDQMPRTGFGTWFSLFYALAGSLLIYHALGDLA
SIPLTLRQSRFEAEVFAQWGDHLTEETLDSLSRRATEIAAVGASSPLRRL
QQQLLLQKQRQEEGKRHEEPPSETGPVLPLSKPGQAPGQLSLEEEDLPAD
GALQAQPPSFFPPPPPRLPPFPASDPALPFLPRAPGVLEEGRAAGRGGGG
SGQGGRGGGGGGGGGGGGEGGGEVLGHCHAGEEVPAVKRLPRDAPSPGAA
ASSLLSSSPSFLHPSPPPQAPAKVSASSSTSSIPTSSSTPPASSLYTRPM
TTQASFPHPTSSLVSFLPSSSPGRHPKRTDAGGGGGRAGGGDGGGTKEVP
KVPSSISREEFIISMMLLLGRVDMLHVREAQKVFDQLDKDKTGVLDEADV
VRRVAQQTGLQYQASRYRRGGAGIPRGEGAARCERTGPIPRPNDRARGEG
GGEGRGGAGADKEGRRGEWKGGVRVLAAEGGGKAYGPGALVLFVPCALYS
DLLLLHTRVSRLCSPARAAVPAAGAGSAPTTA back to topmRNA from alignment at KK037247.1:611474..614479+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8118 ID=rna8118|Name=rna8118|organism=Nannochloropsis gaditana|type=mRNA|length=3006bp|location=Sequence derived from alignment at KK037247.1:611474..614479+ (Nannochloropsis gaditana)
GTCAGGTTAGGGGGGGTGGATACGAGGTGCGGACTGGGCTTCAGTGTTCC
TCTGCTCCGTCACtgcccctcttgccccctTATTCCAAGcacgtccttct
tccctctttccctttccccctccctccttccttccctttccccctgcctc
cgcagCTACggcgtcttcttctccgcccaGATGATCATGGGGAGCGGGTG
GGTGGACCAAATGCCCCGCACGGGCTTCGGCACCTGgttctccctcttct
atgCCTTGGCAGGCAGCCTCCTCATCTACCACGCCCTGGGAGAcctggcc
tccatccccctcacCTTGCGGCAGAGCCGTTTCGAAGCGGAAGTCTTCGC
GCAATGGGGGGACCATCTCACGGAGGAAACGCTCGATTCTTTGTCCCGAC
GCGCGACGGAGATCGCGGCGGTGGGGGCTTCGTCCCCCTTGCGGCGGGTA
CGAGGGaagcgatggggagggagggcggaggggggaatggggggaagggg
aagggaagggcgggaggggcgggagtgaaggaggggaggttcggGACAGG
GATGAATCCGGAAGGCGGAGGCAACTTAAAGACCGACCACGCacgctttt
ccctctttccctttcagcTACAGCAGCAGCTTCTCCTGCAAAAAcagcga
caggaggaagggaaaagacaCGAGGAGCCGCCGTCGGAAACCGGGCCGGT
CCTTCCCTTGTCGAAGCCCGGTCAGGCGCCTGGACAGCTGTCgcttgaag
aagaggatCTGCCCGCGGACGGCGCCCTCCAAGcacaacctccctccttc
ttccctcctcctccccctcgccttcctcctttccccgcctcggaTCCCGC
ACTACCGTTTTTGCCGCGCGCCCCAGGCGTGcttgaagaagggagggcag
ctggcagaggaggaggagggagtggacaaggaggaagaggaggaggagga
ggaggaggaggaggaggaggaggagaaggagggggtgaggtTCTGGGGCA
CTGTCatgcaggggaagaggttcCAGCAGTCAAGAGGCTGCCGAGGGATG
CGCCGTCCCCcggcgccgccgcctcctccctcctctcctcctccccttcg
tttctgcacccctctcctcctccgcaagCTCCCGCCAAggtctccgcgtc
ctcctccacctcctccattcccacctcctcgtcgacccctcccgcctcat
cACTCTACACACGCCCCATGACAACCCaggcctctttccctcacccgacc
tcctcccttgtctcttttcttccctcctcatcccctggCCGCCATCCAAA
GCGCACcgacgcgggaggggggggagggagggccgggggaggcgacgggg
gcgggacGAAGGAAGTGCCCAAGGTCCCGAGCTCGATCTCTCGGGAGGAG
TTCATCATCAGCATGATGCTCCTCCTGGGCCGCGTGGACATGCTCCACGT
CCGGGAGGCGCAGAAAGTCTTCGACCAGCTGGATAAAGACAAAACGGGcg
tcctggacgaggcggacgtgGTTCGCCGCGTGGCCCAACAGACGGGGCTG
CAGTACCAAGCCTCCCGCTACcgacgggggggagcgggaataccccgggg
ggagggagcggctcGGTGCGAAAGAACGGGGCCCATTCCTCGCCCAAACG
ACCGGgcgcggggagagggggggggggaggggaggggaggggcgggcgcc
gacaaggagggaaggaggggggaatggaagggaggggtcaggGTCCTTgc
agcggaaggaggagggaaggcgtaTGGACCGGgagccctcgtcctcttcg
tcccttGTGCCCTCTACtctgacctcctcctccttcacacgCGCGTCTCC
CGCCTCTGTAGCCCCGCAAGAGCAGCTGTACCTGCAGCGGGCGCAGGCAG
CGCCCCCACCACAGCATGAACAGAACGGAGGCGATTGAGTGCACAGGATG
CCGGCACTGGAACGACccgagagagagaaaaaagtCATCATCGTTCCGCT
TTCTTTCGACGCACTTTTGGcgaccctcctcctgcacaaCCTttactttc
cctccttgtccctcacccccccccctcactcccccTCGGACGACGATCCA
TAGCTAGCTAGCAGTCCCTGCaaccccccgcccgcctgtcctccccctcc
cttctccaccccggccccttccttagcttctgctcctctttcaccctcct
ccggctttggcttcccctcccttcccacttCCCACTTGGGCATTttgttc
cccccctccttcccctccttccctccgttctcctccgccttcctcttctt
cgcctttATCCGGACGAGCGGCTTCAACATTGTCCTGGATCCGTCACTGA
GCCCCGGCGCTGCGCCCAATAGCCCGTGTTCTGTACCTcgcgccctcttt
ccctccctccctcccatcccccctccttcctcgtccgaaTCCTCCAACTT
CTTCAAgccccccacgccccccttcctggccaaggcaaaggcccgccgcg
cctcctcctcctcctcctcctccccctccttccctccctccctctgcccc
tccccgtACATCTCCACCAGCCGATCCCCCCGAATCAGATCCCGCTTGTT
GCCCATCACCTTGGTCTCCTCCAACGCATCCAAAATGTCCATCTCCAGCT
TCGAGTCGATGGTCCGGTGCTCCAAGGCCTTCATCGCgtcctgctgctcc
tcctctgcccgtcgctccccctcctccttctccgccttctcttgcTCCTT
CCAGACCTCGAACAGCCGCTTGGCACCGTGCTCCATCGCGTAGTCCATTT
TTTCAGGGTCCGTGATGAAGGTGATCTCCCGCGAGCAGGTCATGCACTTC
ATGTAAAACCGGAACTTCTTAATCCCCTTGTACGTGTCCCCCTGgacgtc
ttccttcctggaAGCcacagggaaggagcgaaagCGGGTTTTTGGTGCCG
GGGTTAAAAAAAGAACAAATGATGGGGAATGATTAGGATTGGTCAGACAC
AATGTA back to topCoding sequence (CDS) from alignment at KK037247.1:611474..614479+ >rna8118 ID=rna8118|Name=rna8118|organism=Nannochloropsis gaditana|type=CDS|length=3498bp|location=Sequence derived from alignment at KK037247.1:611474..614479+ (Nannochloropsis gaditana)
GTCAGGTTAGGGGGGGTGGATACGAGGTGCGGACTGGGCTTCAGTGTTCC
TCTGCTCCGTCACtgcccctcttgccccctTATTCCAAGcacgtccttct
tccctctttccctttccccctccctccttccttccctttccccctgcctc
cgcagCTACggcgtcttcttctccgcccaGATGATCATGGGGAGCGGGTG
GGTGGACCAAATGCCCCGCACGGGCTTCGGCACCTGgttctccctcttct
atgCCTTGGCAGGCAGCCTCCTCATCTACCACGCCCTGGGAGAcctggcc
tccatccccctcacCTTGCGGCAGAGCCGTTTCGAAGCGGAAGTCTTCGC
GCAATGGGGGGACCATCTCACGGAGGAAACGCTCGATTCTTTGTCCCGAC
GCGCGACGGAGATCGCGGCGGTGGGGGCTTCGTCCCCCTTGCGGCGGcTA
CAGCAGCAGCTTCTCCTGCAAAAAcagcgacaggaggaagggaaaagaca
CGAGGAGCCGCCGTCGGAAACCGGGCCGGTCCTTCCCTTGTCGAAGCCCG
GTCAGGCGCCTGGACAGCTGTCgcttgaagaagaggatCTGCCCGCGGAC
GGCGCCCTCCAAGcacaacctccctccttcttccctcctcctccccctcg
ccttcctcctttccccgcctcggaTCCCGCACTACCGTTTTTGCCGCGCG
CCCCAGGCGTGcttgaagaagggagggcagctggcagaggaggaggaggg
agtggacaaggaggaagaggaggaggaggaggaggaggaggaggaggagg
aggagaaggagggggtgaggtTCTGGGGCACTGTCatgcaggggaagagg
ttcCAGCAGTCAAGAGGCTGCCGAGGGATGCGCCGTCCCCcggcgccgcc
gcctcctccctcctctcctcctccccttcgtttctgcacccctctcctcc
tccgcaagCTCCCGCCAAggtctccgcgtcctcctccacctcctccattc
ccacctcctcgtcgacccctcccgcctcatcACTCTACACACGCCCCATG
ACAACCCaggcctctttccctcacccgacctcctcccttgtctcttttct
tccctcctcatcccctggCCGCCATCCAAAGCGCACcgacgcgggagggg
ggggagggagggccgggggaggcgacgggggcgggacGAAGGAAGTGCCC
AAGGTCCCGAGCTCGATCTCTCGGGAGGAGTTCATCATCAGCATGATGCT
CCTCCTGGGCCGCGTGGACATGCTCCACGTCCGGGAGGCGCAGAAAGTCT
TCGACCAGCTGGATAAAGACAAAACGGGcgtcctggacgaggcggacgtg
GTTCGCCGCGTGGCCCAACAGACGGGGCTGCAGTACCAAGCCTCCCGCTA
CcgacgggggggagcgggaataccccggggggagggagcggctcGGTGCG
AAAGAACGGGGCCCATTCCTCGCCCAAACGACCGGgcgcggggagagggg
gggggggaggggaggggaggggcgggcgccgacaaggagggaaggagggg
ggaatggaagggaggggtcaggGTCCTTgcagcggaaggaggagggaagg
cgtaTGGACCGGgagccctcgtcctcttcgtcccttGTGCCCTCTACtct
gacctcctcctccttcacacgCGCGTCTCCCGCCTCTGTAGCCCCGCAAG
AGCAGCTGTACCTGCAGCGGGCGCAGGCAGCGCCCCCACCACAGCATGAG
TCAGGTTAGGGGGGGTGGATACGAGGTGCGGACTGGGCTTCAGTGTTCCT
CTGCTCCGTCACtgcccctcttgccccctTATTCCAAGcacgtccttctt
ccctctttccctttccccctccctccttccttccctttccccctgcctcc
gcagCTACggcgtcttcttctccgcccaGATGATCATGGGGAGCGGGTGG
GTGGACCAAATGCCCCGCACGGGCTTCGGCACCTGgttctccctcttcta
tgCCTTGGCAGGCAGCCTCCTCATCTACCACGCCCTGGGAGAcctggcct
ccatccccctcacCTTGCGGCAGAGCCGTTTCGAAGCGGAAGTCTTCGCG
CAATGGGGGGACCATCTCACGGAGGAAACGCTCGATTCTTTGTCCCGACG
CGCGACGGAGATCGCGGCGGTGGGGGCTTCGTCCCCCTTGCGGCGGcTAC
AGCAGCAGCTTCTCCTGCAAAAAcagcgacaggaggaagggaaaagacaC
GAGGAGCCGCCGTCGGAAACCGGGCCGGTCCTTCCCTTGTCGAAGCCCGG
TCAGGCGCCTGGACAGCTGTCgcttgaagaagaggatCTGCCCGCGGACG
GCGCCCTCCAAGcacaacctccctccttcttccctcctcctccccctcgc
cttcctcctttccccgcctcggaTCCCGCACTACCGTTTTTGCCGCGCGC
CCCAGGCGTGcttgaagaagggagggcagctggcagaggaggaggaggga
gtggacaaggaggaagaggaggaggaggaggaggaggaggaggaggagga
ggagaaggagggggtgaggtTCTGGGGCACTGTCatgcaggggaagaggt
tcCAGCAGTCAAGAGGCTGCCGAGGGATGCGCCGTCCCCcggcgccgccg
cctcctccctcctctcctcctccccttcgtttctgcacccctctcctcct
ccgcaagCTCCCGCCAAggtctccgcgtcctcctccacctcctccattcc
cacctcctcgtcgacccctcccgcctcatcACTCTACACACGCCCCATGA
CAACCCaggcctctttccctcacccgacctcctcccttgtctcttttctt
ccctcctcatcccctggCCGCCATCCAAAGCGCACcgacgcgggaggggg
gggagggagggccgggggaggcgacgggggcgggacGAAGGAAGTGCCCA
AGGTCCCGAGCTCGATCTCTCGGGAGGAGTTCATCATCAGCATGATGCTC
CTCCTGGGCCGCGTGGACATGCTCCACGTCCGGGAGGCGCAGAAAGTCTT
CGACCAGCTGGATAAAGACAAAACGGGcgtcctggacgaggcggacgtgG
TTCGCCGCGTGGCCCAACAGACGGGGCTGCAGTACCAAGCCTCCCGCTAC
cgacgggggggagcgggaataccccggggggagggagcggctcGGTGCGA
AAGAACGGGGCCCATTCCTCGCCCAAACGACCGGgcgcggggagaggggg
ggggggaggggaggggaggggcgggcgccgacaaggagggaaggaggggg
gaatggaagggaggggtcaggGTCCTTgcagcggaaggaggagggaaggc
gtaTGGACCGGgagccctcgtcctcttcgtcccttGTGCCCTCTACtctg
acctcctcctccttcacacgCGCGTCTCCCGCCTCTGTAGCCCCGCAAGA
GCAGCTGTACCTGCAGCGGGCGCAGGCAGCGCCCCCACCACAGCATGA back to top
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