rna8083, rna8083 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8083
Unique Name	rna8083
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	854
Alignment location	KK037247.1:523472..524798 -

Link to JBrowse

Properties


Property Name	Value
Product	ribosomal protein l27
Orig transcript id	gnl\|cribi\|Naga_100126g25.3027.mrna
Orig protein id	gnl\|cribi\|Naga_100126g25.3027
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:523472..524798 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100126g25	gene7827	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8083	rna8083-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22601.1	cds8061	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:523472..524798-
coding sequence from alignment at KK037247.1:523472..524798-

mRNA sequence

>rna8083 ID=rna8083|Name=rna8083|organism=Nannochloropsis gaditana|type=mRNA|length=854bp
CCCCCCCCGCCTTCCTCCCCCGCCTCGCATCCTGCTGCAGCCTCCGCAGG
CCTAGGGCCAAGTCAAGCAGACGACGGCGAGGGCGGGGTCCAGGGCGCAC
TGAGATCTGCCCCTCCACCTGCCTCCCCTCTCCTCTCCTCTTCTCCGCCC
TCGGAGGAGGCAGCACCGGAGGAGGGGGTCGAGTCCTTTCCCTTCCCCTC
CTTTCTGGACCTCGAGTCGGCTTACCCTCTCCTCGACAACGCCCGACCGG
CCGCGGACAAGCCGGGAGCCACGCCCCGCACCAGCACACCGGCCCCTAGT
GTCGGCGGCGGCAACGCCAGCTCTCAAAGTCGGCGGGCGAGCAGCGTAGG
CGCGAAGGCCTGAGAGGGTCGCTGCACGTTTTTGTAGGATAGGGCCGGCG
TTGCAAGCGCCTGGAGACGGGCCTTCGACGCGGACAGGTCGCAGAGATGT
GTGGAGAACGTCAAAGGCAGGGAGATGAGGGGCTCAAAGAAAGAACGACA
CGCCACAAGTCCCTGACGGTGAAGAACCCTGGTATGCTCACGTGGTCCTC
TTGGCCCATTGCGTTCTCCCTGCGTGCTCCTGAAGGGCTGACCGCTCATG
CCAATCATGGGTCGCGTTCGCTCCATTTGGCGCCCAATTTTGCTTCCCGA
GAAACTCGCAAAGCGAGGAGCCTGAAGCGGCGACGGCCAGAGGGTCTATA
GCCGGAGCCCGTGGTATTGTCAGGTCTGTCGCACGCAGCCATCCCCCCTT
CCTTTGATCTTGAGGGTCGAATATCGCCATGAGGCCGAGCGAAAGGAACG
AACCCAAGCATCGCCTCGTCACGACTCGAAAGAAACATTAAGCAAGACAA
TGAG

protein sequence of rna8083

>rna8083-protein ID=rna8083-protein|Name=rna8083|organism=Nannochloropsis gaditana|type=polypeptide|length=141bp
MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPR
KVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPTDDR
KALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF

mRNA from alignment at KK037247.1:523472..524798-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8083 ID=rna8083|Name=rna8083|organism=Nannochloropsis gaditana|type=mRNA|length=1327bp|location=Sequence derived from alignment at KK037247.1:523472..524798- (Nannochloropsis gaditana)
ACGGCTCAGAGCGAAGAAAAGAAGCGAGGCACTAAGAAGGTACTTGATAG
CCGTTCCCTTACCCGTTTCCACCGACTCCTGGTTTCCATCATTAGCTGAT
CGTACGCATACGTCGAAGGGAGTGTGGGTATCTGGATGGAGGGTGGAGGG
GATTATGTGATCAAAATCCCTGCCTGCAGGGCTGCCGTCCTAATCCTCCT
CCAAGCACCATCAATTTCTCTCTCTCCCTACTCGAGCGAGATGCAGCTGT
GGACTTGCTGCCTGGTAAATTATTGACATCCATACTCATATGTATACTCA
TTGGCTCTCCTACAGGTCGTGCCTTATCGTTGCCAGTACTTGGAAGGGTC
AGACTCGACGAAGCAGATATGGGAATGTGAGTCGACGTGGGAGAGGGGGG
AGAGGGTTAGGAGAGGTAATTTTAGGCTCGATTTTCGATGAGGAGTCGAG
TTTGAGTGTATTCATGTGTAATCTGAATGTAAATGATGTAGCTTTGGTGC
GACTAGTAAGCAGAGAGGTCGGGTGGAAGGACATCACACTTTGTAAAACA
CCTTCGTAGTGCTCGTCTTGTTGCTCGCGCAACATTTGGATAAACTGCGT
TCATTGCAGGACTCAGGAGGGTGCGGATCACTAGTTTATGTTGGTGAAGG
TACAATGAGACACAACTAGACATTGACACCGACTTACCGCTTTCCCTCTC
CTCGCCCTCAGCATCAAACCCGGCAAAGTCGTGGTGGTGTTGGCAGGCCG
GTACGCGGGCAAGAAGGCCGTGGTCGTAAAGGCCTTGGACGAGGGCTCGG
TGGACAAGCGTTTCCCTCACGCTATTGTCTGCGGCATCGATGTGGCGCCC
CGCAAGGTCACCCGCAGCATGAATAAGAAGACCATCAAGCGGAAGTCGAA
GGTAAAGCCTTTCGTGAAGGCGATCAACTACACGCACATCCTTCCCACGC
GCTACGTGGTAGACATCGACTTGAAGAAGGCAGAGGAGCCGACGGACGAC
AGGAAAGCGCTGAAGCGCGCGATCCGAAAGACGCTGGAGGAGCGCTACCT
AGACCAGGCATCGATTGCGGCCAAGTCCGAGCGCAAGTCACAGGGTACGG
CTTACTTCTACAAGAAGCTGCGGTTTTAAGCAGGGGTTGCAGCCTTAGCG
GTGGCTTCGAGAGGGAGGGTGATGTGTATGGGCTGGACGTGCGCAACAGC
TGCGGAAGAAGCCAGGTGTCTTTCGGGGTAGGCCGCGGGTGTAACGCTCT
GTACAACCACAGCGCCGGTGGGATGGAGTGGATCAAACCGGATAAAGAAA
AGGAAAGAGGATGATTGCACTCATTGT

Coding sequence (CDS) from alignment at KK037247.1:523472..524798-

>rna8083 ID=rna8083|Name=rna8083|organism=Nannochloropsis gaditana|type=CDS|length=852bp|location=Sequence derived from alignment at KK037247.1:523472..524798- (Nannochloropsis gaditana)
CATCAAACCCGGCAAAGTCGTGGTGGTGTTGGCAGGCCGGTACGCGGGCA
AGAAGGCCGTGGTCGTAAAGGCCTTGGACGAGGGCTCGGTGGACAAGCGT
TTCCCTCACGCTATTGTCTGCGGCATCGATGTGGCGCCCCGCAAGGTCAC
CCGCAGCATGAATAAGAAGACCATCAAGCGGAAGTCGAAGGTAAAGCCTT
TCGTGAAGGCGATCAACTACACGCACATCCTTCCCACGCGCTACGTGGTA
GACATCGACTTGAAGAAGGCAGAGGAGCCGACGGACGACAGGAAAGCGCT
GAAGCGCGCGATCCGAAAGACGCTGGAGGAGCGCTACCTAGACCAGGCAT
CGATTGCGGCCAAGTCCGAGCGCAAGTCACAGGGTACGGCTTACTTCTAC
AAGAAGCTGCGGTTTTAAATGGGAATCATCAAACCCGGCAAAGTCGTGGT
GGTGTTGGCAGGCCGGTACGCGGGCAAGAAGGCCGTGGTCGTAAAGGCCT
TGGACGAGGGCTCGGTGGACAAGCGTTTCCCTCACGCTATTGTCTGCGGC
ATCGATGTGGCGCCCCGCAAGGTCACCCGCAGCATGAATAAGAAGACCAT
CAAGCGGAAGTCGAAGGTAAAGCCTTTCGTGAAGGCGATCAACTACACGC
ACATCCTTCCCACGCGCTACGTGGTAGACATCGACTTGAAGAAGGCAGAG
GAGCCGACGGACGACAGGAAAGCGCTGAAGCGCGCGATCCGAAAGACGCT
GGAGGAGCGCTACCTAGACCAGGCATCGATTGCGGCCAAGTCCGAGCGCA
AGTCACAGGGTACGGCTTACTTCTACAAGAAGCTGCGGTTTTAAATGGGA
AT

Synonyms

Publications