EWM22601.1, cds8061 (CDS) Nannochloropsis gaditana

Overview
NameEWM22601.1
Unique Namecds8061
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:524423..524430 -
Alignment locationKK037247.1:523670..524087 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22601.1
Productribosomal protein l27
Orig transcript idgnl|cribi|Naga_100126g25.3027.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:524423..524430 -
KK037247.1supercontigKK037247.1:523670..524087 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR001141Ribosomal_L27e
IPR014722Rib_L2_dom2
IPR005824KOW
Homology
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|553178960|ref|XP_005852627.1| (large subunit ribosomal protein L27e [Nannochloropsis gaditana CCMP526] >gi|422295906|gb|EKU23205.1| large subunit ribosomal protein L27e [Nannochloropsis gaditana CCMP526] >gi|585103164|gb|EWM22601.1| ribosomal protein l27 [Nannochloropsis gaditana])

HSP 1 Score: 280.796 bits (717), Expect = 1.148e-95
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
            MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF
Sbjct:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141          
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|669158192|ref|XP_008614658.1| (hypothetical protein SDRG_10447 [Saprolegnia diclina VS20] >gi|813177841|ref|XP_012205390.1| hypothetical protein SPRG_10070 [Saprolegnia parasitica CBS 223.65] >gi|530733688|gb|EQC31930.1| hypothetical protein SDRG_10447 [Saprolegnia diclina VS20] >gi|641529767|gb|KDO23924.1| hypothetical protein SPRG_10070 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 171.4 bits (433), Expect = 2.073e-52
Identity = 89/146 (60.96%), Postives = 112/146 (76.71%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKA--EE---PTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
            MGI+K GKVVV+L GRYAG+KA+VVK  DEG  D++F HAIV GID  PRK+TRSM KK + ++SKVKPFVKA+NYTHI+PTRYV DIDLKK   EE     + R   ++ I+K  E+RYL+QA  A KSE+K+ G ++F+KKLRF
Sbjct:    1 MGIVKNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFGHAIVAGIDRYPRKITRSMGKKKVAKRSKVKPFVKAVNYTHIMPTRYVADIDLKKVLDEEVMATPEARIESRKTIKKVFEDRYLNQA--ACKSEKKAAGVSFFFKKLRF 144          
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|695374633|ref|XP_009515343.1| (hypothetical protein PHYSODRAFT_353474 [Phytophthora sojae] >gi|348688254|gb|EGZ28068.1| hypothetical protein PHYSODRAFT_353474 [Phytophthora sojae])

HSP 1 Score: 168.703 bits (426), Expect = 2.486e-51
Identity = 85/146 (58.22%), Postives = 109/146 (74.66%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPT-----DDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
            MGI+K GKVVV+L GR+AG+KA+VVK  DEG  D++F HAIV GID  PRKVTR+M K  +K++SKVKPFVK +NY HI+PTRYV DIDLKK  +       + R   ++ I+K  EERYL+QA  A KSE+K+ G ++F+KKLRF
Sbjct:    1 MGIVKNGKVVVLLNGRFAGRKAIVVKTYDEGKGDRKFGHAIVAGIDRYPRKVTRAMGKNKLKKRSKVKPFVKYVNYNHIMPTRYVADIDLKKVLDDEVLANPETRNESRKTIKKVFEERYLNQA--ACKSEKKAAGVSFFFKKLRF 144          
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|675205647|ref|XP_008911708.1| (hypothetical protein PPTG_16130 [Phytophthora parasitica INRA-310] >gi|566014582|gb|ETI37493.1| hypothetical protein F443_16524 [Phytophthora parasitica P1569] >gi|567952035|gb|ETK77718.1| hypothetical protein L915_16051 [Phytophthora parasitica] >gi|567980711|gb|ETL31164.1| hypothetical protein L916_15944 [Phytophthora parasitica] >gi|568010236|gb|ETL84426.1| hypothetical protein L917_15744 [Phytophthora parasitica] >gi|568040123|gb|ETM37587.1| hypothetical protein L914_15879 [Phytophthora parasitica] >gi|568088302|gb|ETN03164.1| hypothetical protein PPTG_16130 [Phytophthora parasitica INRA-310] >gi|570318326|gb|ETO66274.1| hypothetical protein F444_16494 [Phytophthora parasitica P1976] >gi|570942109|gb|ETP07366.1| hypothetical protein F441_16335 [Phytophthora parasitica CJ01A1] >gi|570972618|gb|ETP35416.1| hypothetical protein F442_16361 [Phytophthora parasitica P10297] >gi|970633228|gb|KUF78997.1| 60S ribosomal protein L27 [Phytophthora nicotianae] >gi|970646584|gb|KUF86688.1| 60S ribosomal protein L27 [Phytophthora nicotianae])

HSP 1 Score: 168.703 bits (426), Expect = 3.095e-51
Identity = 85/146 (58.22%), Postives = 109/146 (74.66%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPT-----DDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
            MGI+K GKVVV+L GR+AG+KA+VVK  DEG  D++F HAIV GID  PRKVTR+M K  +K++SKVKPFVK +NY HI+PTRYV DIDLKK  +       + R   ++ I+K  EERYL+QA  A KSE+K+ G ++F+KKLRF
Sbjct:    1 MGIVKNGKVVVLLNGRFAGRKAIVVKTFDEGKGDRKFGHAIVAGIDRYPRKVTRAMGKNKLKKRSKVKPFVKYVNYNHIMPTRYVADIDLKKVLDDEVLANPESRIESRKTIKKVFEERYLNQA--ACKSEKKAAGVSFFFKKLRF 144          
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|301117182|ref|XP_002906319.1| (60S ribosomal protein L27 [Phytophthora infestans T30-4] >gi|262107668|gb|EEY65720.1| 60S ribosomal protein L27 [Phytophthora infestans T30-4])

HSP 1 Score: 167.933 bits (424), Expect = 5.291e-51
Identity = 84/146 (57.53%), Postives = 109/146 (74.66%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPT-----DDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
            MGI+K GKVVV+L GR+AG+KA+VVK  DEG  D++F HAIV GID  PRKVTR+M K  +K+++KVKPFVK +NY HI+PTRYV DIDLKK  +       + R   ++ I+K  EERYL+QA  A KSE+K+ G ++F+KKLRF
Sbjct:    1 MGIVKNGKVVVLLNGRFAGRKAIVVKTFDEGKGDRKFSHAIVAGIDRYPRKVTRAMGKNKLKKRTKVKPFVKYVNYNHIMPTRYVADIDLKKVLDDEVLANPESRIESRKTIKKVFEERYLNQA--ACKSEKKAAGVSFFFKKLRF 144          
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|1173942442|gb|OQR91445.1| (60S ribosomal protein L27 [Thraustotheca clavata])

HSP 1 Score: 167.933 bits (424), Expect = 6.607e-51
Identity = 87/143 (60.84%), Postives = 110/143 (76.92%), Query Frame = 0
Query:    4 IKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKA--EE---PTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
            +K GKVVVVL GRYAG+KA+VVKA DEG+ D++F HAIV GID  PRK+TRSM KK + ++SK+KPFVKAINY HI+PTRYV DIDLKK   EE     + R   ++ I+K  E+RYL+QA  A KSE+K+ G ++F+KKLRF
Sbjct:   10 VKNGKVVVVLNGRYAGRKAIVVKAYDEGNGDRKFGHAIVAGIDRYPRKITRSMGKKKVAKRSKIKPFVKAINYNHIMPTRYVADIDLKKVLDEEVLSKAEARVESRKTIKKVFEDRYLNQA--ACKSEKKAAGVSFFFKKLRF 150          
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|298706867|emb|CBJ25831.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 167.162 bits (422), Expect = 1.758e-50
Identity = 88/148 (59.46%), Postives = 112/148 (75.68%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEE-------PTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
            MGIIK GKVVV+LAGRYAG+KA+VVK  DEGS +++F HAIV GID  PR+VT++M+K  IK+++K+KPFVK +N  HI+PTRY VDIDLKKA +       PTD RK    A+RK  EERYL+Q  +  KSE+K+ G  YF++KLRF
Sbjct:   21 MGIIKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDETAIKASPTDVRK----AVRKIFEERYLNQKDV--KSEKKATGVKYFFEKLRF 162          
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|673034948|ref|XP_008871435.1| (hypothetical protein H310_07727 [Aphanomyces invadans] >gi|574472655|gb|ETV99659.1| hypothetical protein H310_07727 [Aphanomyces invadans])

HSP 1 Score: 165.622 bits (418), Expect = 5.443e-50
Identity = 84/146 (57.53%), Postives = 108/146 (73.97%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPT-----DDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
            MGI+K GKVVV+L GRYAG+KA+VVK  DEG  D++F HAIV GID  PRKVTRSM KK + ++SK+KPFVK +NY HILPTRYV DI+LKK  +       + R   ++ I+K  E+RYL+Q   A KSE+K+ G ++F+KKLRF
Sbjct:    1 MGIVKNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFAHAIVAGIDRYPRKVTRSMGKKKVAKRSKIKPFVKYVNYNHILPTRYVADIELKKVLDDEVLATPEARIESRKTIKKVFEDRYLNQG--ATKSEKKAAGVSFFFKKLRF 144          
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|1173936506|gb|OQR87439.1| (60S ribosomal protein L27 [Achlya hypogyna])

HSP 1 Score: 165.236 bits (417), Expect = 7.703e-50
Identity = 86/143 (60.14%), Postives = 109/143 (76.22%), Query Frame = 0
Query:    4 IKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKA--EE---PTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
            +K GKVVV+L GRYAG+KA+VVK  DEG  D++F HAIV GID  PRK+TRSM KK + ++SKVKPFVKA+NYTHI+PTRYV DIDLKK   EE     + R   ++ I+K  E+RYL+QA  A KSE+K+ G ++F+KKLRF
Sbjct:    6 VKNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFGHAIVAGIDRYPRKITRSMGKKKVAKRSKVKPFVKAVNYTHIMPTRYVADIDLKKVLDEEVMATPEARIESRKTIKKVFEDRYLNQA--ACKSEKKAAGVSFFFKKLRF 146          
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|698813672|ref|XP_009839865.1| (hypothetical protein H257_13877 [Aphanomyces astaci] >gi|574105276|gb|ETV70801.1| hypothetical protein H257_13877 [Aphanomyces astaci])

HSP 1 Score: 164.081 bits (414), Expect = 1.979e-49
Identity = 83/146 (56.85%), Postives = 108/146 (73.97%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPT-----DDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
            MGI+K GKVVV+L GRYAG+KA+VVK  DEG  D++F HAIV GID  PRK+TRSM KK + ++SK+KPFVK +NY HILPTRYV DI+LKK  +       + R   ++ I+K  E+RYL+Q   A KSE+K+ G ++F+KKLRF
Sbjct:    1 MGIVKNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFGHAIVAGIDRYPRKITRSMGKKKVTKRSKIKPFVKYVNYNHILPTRYVADIELKKVVDDEVLATPEARIESRKIIKKVFEDRYLNQG--ATKSEKKAAGVSFFFKKLRF 144          
The following BLAST results are available for this feature:
BLAST of EWM22601.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553178960|ref|XP_005852627.1|1.148e-95100.00large subunit ribosomal protein L27e [Nannochlorop... [more]
gi|669158192|ref|XP_008614658.1|2.073e-5260.96hypothetical protein SDRG_10447 [Saprolegnia dicli... [more]
gi|695374633|ref|XP_009515343.1|2.486e-5158.22hypothetical protein PHYSODRAFT_353474 [Phytophtho... [more]
gi|675205647|ref|XP_008911708.1|3.095e-5158.22hypothetical protein PPTG_16130 [Phytophthora para... [more]
gi|301117182|ref|XP_002906319.1|5.291e-5157.5360S ribosomal protein L27 [Phytophthora infestans ... [more]
gi|1173942442|gb|OQR91445.1|6.607e-5160.8460S ribosomal protein L27 [Thraustotheca clavata][more]
gi|298706867|emb|CBJ25831.1|1.758e-5059.46conserved unknown protein [Ectocarpus siliculosus][more]
gi|673034948|ref|XP_008871435.1|5.443e-5057.53hypothetical protein H310_07727 [Aphanomyces invad... [more]
gi|1173936506|gb|OQR87439.1|7.703e-5060.1460S ribosomal protein L27 [Achlya hypogyna][more]
gi|698813672|ref|XP_009839865.1|1.979e-4956.85hypothetical protein H257_13877 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8083rna8083Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications