EWM22601.1, cds8061 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|553178960|ref|XP_005852627.1| (large subunit ribosomal protein L27e [Nannochloropsis gaditana CCMP526] >gi|422295906|gb|EKU23205.1| large subunit ribosomal protein L27e [Nannochloropsis gaditana CCMP526] >gi|585103164|gb|EWM22601.1| ribosomal protein l27 [Nannochloropsis gaditana]) HSP 1 Score: 280.796 bits (717), Expect = 1.148e-95 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
Query: 1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF
Sbjct: 1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|669158192|ref|XP_008614658.1| (hypothetical protein SDRG_10447 [Saprolegnia diclina VS20] >gi|813177841|ref|XP_012205390.1| hypothetical protein SPRG_10070 [Saprolegnia parasitica CBS 223.65] >gi|530733688|gb|EQC31930.1| hypothetical protein SDRG_10447 [Saprolegnia diclina VS20] >gi|641529767|gb|KDO23924.1| hypothetical protein SPRG_10070 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 171.4 bits (433), Expect = 2.073e-52 Identity = 89/146 (60.96%), Postives = 112/146 (76.71%), Query Frame = 0
Query: 1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKA--EE---PTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
MGI+K GKVVV+L GRYAG+KA+VVK DEG D++F HAIV GID PRK+TRSM KK + ++SKVKPFVKA+NYTHI+PTRYV DIDLKK EE + R ++ I+K E+RYL+QA A KSE+K+ G ++F+KKLRF
Sbjct: 1 MGIVKNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFGHAIVAGIDRYPRKITRSMGKKKVAKRSKVKPFVKAVNYTHIMPTRYVADIDLKKVLDEEVMATPEARIESRKTIKKVFEDRYLNQA--ACKSEKKAAGVSFFFKKLRF 144
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|695374633|ref|XP_009515343.1| (hypothetical protein PHYSODRAFT_353474 [Phytophthora sojae] >gi|348688254|gb|EGZ28068.1| hypothetical protein PHYSODRAFT_353474 [Phytophthora sojae]) HSP 1 Score: 168.703 bits (426), Expect = 2.486e-51 Identity = 85/146 (58.22%), Postives = 109/146 (74.66%), Query Frame = 0
Query: 1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPT-----DDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
MGI+K GKVVV+L GR+AG+KA+VVK DEG D++F HAIV GID PRKVTR+M K +K++SKVKPFVK +NY HI+PTRYV DIDLKK + + R ++ I+K EERYL+QA A KSE+K+ G ++F+KKLRF
Sbjct: 1 MGIVKNGKVVVLLNGRFAGRKAIVVKTYDEGKGDRKFGHAIVAGIDRYPRKVTRAMGKNKLKKRSKVKPFVKYVNYNHIMPTRYVADIDLKKVLDDEVLANPETRNESRKTIKKVFEERYLNQA--ACKSEKKAAGVSFFFKKLRF 144
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|675205647|ref|XP_008911708.1| (hypothetical protein PPTG_16130 [Phytophthora parasitica INRA-310] >gi|566014582|gb|ETI37493.1| hypothetical protein F443_16524 [Phytophthora parasitica P1569] >gi|567952035|gb|ETK77718.1| hypothetical protein L915_16051 [Phytophthora parasitica] >gi|567980711|gb|ETL31164.1| hypothetical protein L916_15944 [Phytophthora parasitica] >gi|568010236|gb|ETL84426.1| hypothetical protein L917_15744 [Phytophthora parasitica] >gi|568040123|gb|ETM37587.1| hypothetical protein L914_15879 [Phytophthora parasitica] >gi|568088302|gb|ETN03164.1| hypothetical protein PPTG_16130 [Phytophthora parasitica INRA-310] >gi|570318326|gb|ETO66274.1| hypothetical protein F444_16494 [Phytophthora parasitica P1976] >gi|570942109|gb|ETP07366.1| hypothetical protein F441_16335 [Phytophthora parasitica CJ01A1] >gi|570972618|gb|ETP35416.1| hypothetical protein F442_16361 [Phytophthora parasitica P10297] >gi|970633228|gb|KUF78997.1| 60S ribosomal protein L27 [Phytophthora nicotianae] >gi|970646584|gb|KUF86688.1| 60S ribosomal protein L27 [Phytophthora nicotianae]) HSP 1 Score: 168.703 bits (426), Expect = 3.095e-51 Identity = 85/146 (58.22%), Postives = 109/146 (74.66%), Query Frame = 0
Query: 1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPT-----DDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
MGI+K GKVVV+L GR+AG+KA+VVK DEG D++F HAIV GID PRKVTR+M K +K++SKVKPFVK +NY HI+PTRYV DIDLKK + + R ++ I+K EERYL+QA A KSE+K+ G ++F+KKLRF
Sbjct: 1 MGIVKNGKVVVLLNGRFAGRKAIVVKTFDEGKGDRKFGHAIVAGIDRYPRKVTRAMGKNKLKKRSKVKPFVKYVNYNHIMPTRYVADIDLKKVLDDEVLANPESRIESRKTIKKVFEERYLNQA--ACKSEKKAAGVSFFFKKLRF 144
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|301117182|ref|XP_002906319.1| (60S ribosomal protein L27 [Phytophthora infestans T30-4] >gi|262107668|gb|EEY65720.1| 60S ribosomal protein L27 [Phytophthora infestans T30-4]) HSP 1 Score: 167.933 bits (424), Expect = 5.291e-51 Identity = 84/146 (57.53%), Postives = 109/146 (74.66%), Query Frame = 0
Query: 1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPT-----DDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
MGI+K GKVVV+L GR+AG+KA+VVK DEG D++F HAIV GID PRKVTR+M K +K+++KVKPFVK +NY HI+PTRYV DIDLKK + + R ++ I+K EERYL+QA A KSE+K+ G ++F+KKLRF
Sbjct: 1 MGIVKNGKVVVLLNGRFAGRKAIVVKTFDEGKGDRKFSHAIVAGIDRYPRKVTRAMGKNKLKKRTKVKPFVKYVNYNHIMPTRYVADIDLKKVLDDEVLANPESRIESRKTIKKVFEERYLNQA--ACKSEKKAAGVSFFFKKLRF 144
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|1173942442|gb|OQR91445.1| (60S ribosomal protein L27 [Thraustotheca clavata]) HSP 1 Score: 167.933 bits (424), Expect = 6.607e-51 Identity = 87/143 (60.84%), Postives = 110/143 (76.92%), Query Frame = 0
Query: 4 IKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKA--EE---PTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
+K GKVVVVL GRYAG+KA+VVKA DEG+ D++F HAIV GID PRK+TRSM KK + ++SK+KPFVKAINY HI+PTRYV DIDLKK EE + R ++ I+K E+RYL+QA A KSE+K+ G ++F+KKLRF
Sbjct: 10 VKNGKVVVVLNGRYAGRKAIVVKAYDEGNGDRKFGHAIVAGIDRYPRKITRSMGKKKVAKRSKIKPFVKAINYNHIMPTRYVADIDLKKVLDEEVLSKAEARVESRKTIKKVFEDRYLNQA--ACKSEKKAAGVSFFFKKLRF 150
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|298706867|emb|CBJ25831.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 167.162 bits (422), Expect = 1.758e-50 Identity = 88/148 (59.46%), Postives = 112/148 (75.68%), Query Frame = 0
Query: 1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEE-------PTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
MGIIK GKVVV+LAGRYAG+KA+VVK DEGS +++F HAIV GID PR+VT++M+K IK+++K+KPFVK +N HI+PTRY VDIDLKKA + PTD RK A+RK EERYL+Q + KSE+K+ G YF++KLRF
Sbjct: 21 MGIIKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDETAIKASPTDVRK----AVRKIFEERYLNQKDV--KSEKKATGVKYFFEKLRF 162
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|673034948|ref|XP_008871435.1| (hypothetical protein H310_07727 [Aphanomyces invadans] >gi|574472655|gb|ETV99659.1| hypothetical protein H310_07727 [Aphanomyces invadans]) HSP 1 Score: 165.622 bits (418), Expect = 5.443e-50 Identity = 84/146 (57.53%), Postives = 108/146 (73.97%), Query Frame = 0
Query: 1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPT-----DDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
MGI+K GKVVV+L GRYAG+KA+VVK DEG D++F HAIV GID PRKVTRSM KK + ++SK+KPFVK +NY HILPTRYV DI+LKK + + R ++ I+K E+RYL+Q A KSE+K+ G ++F+KKLRF
Sbjct: 1 MGIVKNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFAHAIVAGIDRYPRKVTRSMGKKKVAKRSKIKPFVKYVNYNHILPTRYVADIELKKVLDDEVLATPEARIESRKTIKKVFEDRYLNQG--ATKSEKKAAGVSFFFKKLRF 144
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|1173936506|gb|OQR87439.1| (60S ribosomal protein L27 [Achlya hypogyna]) HSP 1 Score: 165.236 bits (417), Expect = 7.703e-50 Identity = 86/143 (60.14%), Postives = 109/143 (76.22%), Query Frame = 0
Query: 4 IKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKA--EE---PTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
+K GKVVV+L GRYAG+KA+VVK DEG D++F HAIV GID PRK+TRSM KK + ++SKVKPFVKA+NYTHI+PTRYV DIDLKK EE + R ++ I+K E+RYL+QA A KSE+K+ G ++F+KKLRF
Sbjct: 6 VKNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFGHAIVAGIDRYPRKITRSMGKKKVAKRSKVKPFVKAVNYTHIMPTRYVADIDLKKVLDEEVMATPEARIESRKTIKKVFEDRYLNQA--ACKSEKKAAGVSFFFKKLRF 146
BLAST of EWM22601.1 vs. NCBI_GenBank
Match: gi|698813672|ref|XP_009839865.1| (hypothetical protein H257_13877 [Aphanomyces astaci] >gi|574105276|gb|ETV70801.1| hypothetical protein H257_13877 [Aphanomyces astaci]) HSP 1 Score: 164.081 bits (414), Expect = 1.979e-49 Identity = 83/146 (56.85%), Postives = 108/146 (73.97%), Query Frame = 0
Query: 1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPT-----DDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
MGI+K GKVVV+L GRYAG+KA+VVK DEG D++F HAIV GID PRK+TRSM KK + ++SK+KPFVK +NY HILPTRYV DI+LKK + + R ++ I+K E+RYL+Q A KSE+K+ G ++F+KKLRF
Sbjct: 1 MGIVKNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFGHAIVAGIDRYPRKITRSMGKKKVTKRSKIKPFVKYVNYNHILPTRYVADIELKKVVDDEVLATPEARIESRKIIKKVFEDRYLNQG--ATKSEKKAAGVSFFFKKLRF 144 The following BLAST results are available for this feature:
BLAST of EWM22601.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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