EWM22649.1, cds8039 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|585103214|gb|EWM22649.1| (u1 small nuclear ribonucleoprotein 70 [Nannochloropsis gaditana]) HSP 1 Score: 590.497 bits (1521), Expect = 0.000e+0 Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0 Query: 1 MRAMFEPRPPVEFLRLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSRGGGESYRARSRSPGRRADRERSRDRGGGDRHRGDRGGDRRRSRSRSRDRRDDRGRDRGDRGGKRRRSRSNDGRYGPAGGGDYYGPGGDKRRR 309 MRAMFEPRPPVEFLRLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSRGGGESYRARSRSPGRRADRERSRDRGGGDRHRGDRGGDRRRSRSRSRDRRDDRGRDRGDRGGKRRRSRSNDGRYGPAGGGDYYGPGGDKRRR Sbjct: 1 MRAMFEPRPPVEFLRLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSRGGGESYRARSRSPGRRADRERSRDRGGGDRHRGDRGGDRRRSRSRSRDRRDDRGRDRGDRGGKRRRSRSNDGRYGPAGGGDYYGPGGDKRRR 309
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|953497759|emb|CEG40519.1| (u1 snrnp 70k protein [Plasmopara halstedii]) HSP 1 Score: 223.016 bits (567), Expect = 1.133e-67 Identity = 125/236 (52.97%), Postives = 165/236 (69.92%), Query Frame = 0 Query: 1 MRAMFEPRPPVEFL-RLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPK-KDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSRGGGESYRARSRSPGRRA 234 ++ +FEP PP++ L RL + P PYTG++ ++ +FET+ PPPR + KER+ R M + KV+ + WDP +D + T+D YKTL V R+SY+TTE++LR EFEQYG I+S+RLV DA+GK RGY FIE+E+E+D+K AYK ADGKKIDGRR++VDVERGRTV+ W+PR+ GGG+G TRKG D + +G A G GAV E +SRGG E R RSRS GR A Sbjct: 32 LKVLFEPNPPLDHLPRLVKRKMP-PYTGLAGFLDVFETETPPPRAVMETPKERQERRRQEKMLANDAKVQEDRAKWDPNAEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGSIKSVRLVEDAEGKSRGYGFIEYEKEADLKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRKGGADVNV-KYSGREAIGHFQVGAVRDEGASRGGREPLRDRSRSRGRAA 265
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|298712969|emb|CBJ26871.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 211.075 bits (536), Expect = 4.680e-63 Identity = 107/192 (55.73%), Postives = 137/192 (71.35%), Query Frame = 0 Query: 1 MRAMFEPRPPVEFLRLAPKPPPRPYTGISQYV------GLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRK 186 MRAMFEP PP+EF + K P G++ + LFE PPP E+F + +++ A AA K E ++ ++ W+PK D K D YKTL +A++SYDTTEKKLRREFEQ+G IQS+R+V D DGKPRGYAF+E+E E DM++AYKR DG+KIDGRR+LVDVERGRTV+ W+PRR GGGLG +RK Sbjct: 27 MRAMFEPPPPLEFKKSVCKRKPPTVEGVAAMLKGKGAANLFEKGVPPPPEKFETPRQKHARIAAAKKKTDEEGLKDKISKWNPKDDPKTKGDAYKTLFIAKISYDTTEKKLRREFEQFGRIQSIRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 218
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|570970681|gb|ETP33800.1| (hypothetical protein F442_17698 [Phytophthora parasitica P10297]) HSP 1 Score: 204.527 bits (519), Expect = 2.109e-60 Identity = 120/237 (50.63%), Postives = 163/237 (68.78%), Query Frame = 0 Query: 1 MRAMFEPRPPVEFL-RLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPK-KDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSR-GGGESYRARSRSPGRRA 234 ++ MFEP PP++ L RL + P PYTG++ ++ +FE+ PPPR+ + KER+ R M + K++ + WDP +D + T+D YKTL V R+SY+TTE++LR EFEQYGP++S+RLV D++GK RGY F+E+E+E+DMK AYK ADGKKIDGRR++VDVERGRTV W+P++ GGG+G TRKG D + +G A G GA E +SR G E R RSRS GR A Sbjct: 32 LKVMFEPNPPLDHLPRLVKRKMP-PYTGLAGFLDVFESVNPPPRDVQETPKERRERRRQEKMAANDAKMQEDRAKWDPNAEDPRKTKDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDSEGKSRGYGFVEYEKEADMKSAYKYADGKKIDGRRVVVDVERGRTVTDWLPKKFGGGIGETRKGGADVNV-KYSGREAIGHFQVGAARDEGASRYGAHEPPRDRSRSRGRAA 266
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|566012948|gb|ETI35859.1| (hypothetical protein F443_17843 [Phytophthora parasitica P1569] >gi|567950454|gb|ETK76165.1| hypothetical protein L915_17367 [Phytophthora parasitica] >gi|567979124|gb|ETL29606.1| hypothetical protein L916_17259 [Phytophthora parasitica] >gi|568008610|gb|ETL82827.1| hypothetical protein L917_17092 [Phytophthora parasitica] >gi|568038536|gb|ETM36064.1| hypothetical protein L914_17162 [Phytophthora parasitica] >gi|570940487|gb|ETP05744.1| hypothetical protein F441_17717 [Phytophthora parasitica CJ01A1] >gi|970640252|gb|KUF82883.1| U1 small nuclear ribonucleoprotein 70 kDa [Phytophthora nicotianae]) HSP 1 Score: 204.527 bits (519), Expect = 2.233e-60 Identity = 120/237 (50.63%), Postives = 163/237 (68.78%), Query Frame = 0 Query: 1 MRAMFEPRPPVEFL-RLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPK-KDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSR-GGGESYRARSRSPGRRA 234 ++ MFEP PP++ L RL + P PYTG++ ++ +FE+ PPPR+ + KER+ R M + K++ + WDP +D + T+D YKTL V R+SY+TTE++LR EFEQYGP++S+RLV D++GK RGY F+E+E+E+DMK AYK ADGKKIDGRR++VDVERGRTV W+P++ GGG+G TRKG D + +G A G GA E +SR G E R RSRS GR A Sbjct: 32 LKVMFEPNPPLDHLPRLVKRKMP-PYTGLAGFLDVFESVNPPPRDVQETPKERRERRRQEKMAANDAKMQEDRAKWDPNAEDPRKTKDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDSEGKSRGYGFVEYEKEADMKSAYKYADGKKIDGRRVVVDVERGRTVTDWLPKKFGGGIGETRKGGADVNV-KYSGREAIGHFQVGAARDEGASRYGAHEPPRDRSRSRGRAA 266
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|675174937|ref|XP_008896353.1| (hypothetical protein PPTG_04234 [Phytophthora parasitica INRA-310] >gi|568104065|gb|ETN18722.1| hypothetical protein PPTG_04234 [Phytophthora parasitica INRA-310] >gi|570316625|gb|ETO64573.1| hypothetical protein F444_17880 [Phytophthora parasitica P1976]) HSP 1 Score: 201.445 bits (511), Expect = 3.371e-59 Identity = 117/232 (50.43%), Postives = 160/232 (68.97%), Query Frame = 0 Query: 1 MRAMFEPRPPVEFL-RLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPK-KDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSR-GGGESYRARSRS 229 ++ MFEP PP++ L RL + P PYTG++ ++ +FE+ PPPR+ + KER+ R M + K++ + WDP +D + T+D YKTL V R+SY+TTE++LR EFEQYGP++S+RLV D++GK RGY F+E+E+E+DMK AYK ADGKKIDGRR++VDVERGRTV W+P++ GGG+G TRKG D + +G A G GA E +SR G E R RSRS Sbjct: 32 LKVMFEPNPPLDHLPRLVKRKMP-PYTGLAGFLDVFESVNPPPRDVQETPKERRERRRQEKMAANDAKMQEDRAKWDPNAEDPRKTKDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDSEGKSRGYGFVEYEKEADMKSAYKYADGKKIDGRRVVVDVERGRTVTDWLPKKFGGGIGETRKGGADVNV-KYSGREAIGHFQVGAARDEGASRYGAHEPPRDRSRS 261
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|1179509661|ref|XP_020677566.1| (U1 small nuclear ribonucleoprotein 70 kDa isoform X1 [Dendrobium catenatum]) HSP 1 Score: 205.297 bits (521), Expect = 1.374e-58 Identity = 110/216 (50.93%), Postives = 145/216 (67.13%), Query Frame = 0 Query: 1 MRAMFEPRPPVEFLRLAPKPPPR-----PYTGISQYVGLF----ETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDAD-GKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPED---ETTGRGAGGGAGG 203 + +FEPRPP+E+ KPPP PY+G++QYV F + + PP ++ + +RKA +++ A+K E+E +DP KD AT DPYKTL VARLSY+TTE +++REFE YGPI+ +RL+MD + KPRGYAFIE+ DMK AYK+ADG+K+D RR+LVDVERGRTV W PRRLGGGLG TR G E+ + +GR A G Sbjct: 46 LLKLFEPRPPLEY-----KPPPEKRKCPPYSGMAQYVSHFAEPGDEEYAPPVQKAETPAQRKARIHKLRLELGAQKAAEELEKYDPHKDSNATGDPYKTLFVARLSYETTEHRIKREFEAYGPIKRVRLIMDKETNKPRGYAFIEYMHTRDMKTAYKQADGRKLDNRRVLVDVERGRTVPNWRPRRLGGGLGSTRVGGEEVNQKHSGREQQQAASG 256
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|902212661|gb|KNA17060.1| (hypothetical protein SOVF_083570 [Spinacia oleracea]) HSP 1 Score: 203.756 bits (517), Expect = 2.148e-58 Identity = 114/215 (53.02%), Postives = 138/215 (64.19%), Query Frame = 0 Query: 1 MRAMFEPRPPVEFLRLAPKPPPR-----PYTGISQYVGLFETDE-----PPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDAD-GKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGG 204 + +FEPRPP+E+ KPPP PY G+ QYV LF E PP +E + R + L K A+ VE E+E +DP+ D ATEDPYKTL VARLSY+T+E +L+REFE YGPI+ +++V D + KPRGYAFIEF DMK AYK+ADG+KIDGRR+LVDVERGRTV W PRRLGGGLG TR G ED GG Sbjct: 45 LLKLFEPRPPLEY-----KPPPEKRKCPPYMGMGQYVNLFPDPEDPEYAPPVKEGETPTQRRARVHQLRLEKGAAKAVE-ELEKYDPQSDANATEDPYKTLFVARLSYETSESRLKREFETYGPIKRVKMVYDKETNKPRGYAFIEFSHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEDVNQNNSTREPQAGG 253
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|146197791|dbj|BAF57614.1| (snRNP70K protein, partial [Dugesia japonica]) HSP 1 Score: 196.438 bits (498), Expect = 6.450e-57 Identity = 108/201 (53.73%), Postives = 137/201 (68.16%), Query Frame = 0 Query: 1 MRAMFEPRPPVEFLRLAPKPP---PRPYTGISQYVGLFE----TDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDA-DGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETT 193 + A+F R P+ F +P P PYTGI+QYV LFE T PP E +ERK E+A + A KVE ++ W+P + T+DPYKTL VAR++YDTTE K+RREFE YGPI+++R+V +A + KPRGY FIE+E E DM AYK ADGKKIDG R+LVDVER RTV+ W PRRLGGGLG TR+GP ++ + Sbjct: 14 LLALFAARDPIPFAIPIERPKHHRPLPYTGIAQYVKLFEDPSETPIPPKVETREEKRERKRKEKAEQI---AYKVEQDLALWNPNEIPSGTKDPYKTLFVARINYDTTENKIRREFEGYGPIKTIRMVKNAMNNKPRGYCFIEYEHERDMHAAYKNADGKKIDGHRVLVDVERARTVRNWRPRRLGGGLGNTRRGPPEQNS 211
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|1160556393|ref|XP_020436093.1| (U1 small nuclear ribonucleoprotein 70 kDa protein [Polysphondylium pallidum PN500] >gi|281209808|gb|EFA83976.1| U1 small nuclear ribonucleoprotein 70 kDa protein [Polysphondylium pallidum PN500]) HSP 1 Score: 197.208 bits (500), Expect = 2.152e-56 Identity = 96/192 (50.00%), Postives = 130/192 (67.71%), Query Frame = 0 Query: 1 MRAMFEPRPPVEFLRLAPKPPPRPYTGISQYVGLFETDEPPPRERFL----SYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMD-ADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKG 187 + MF RPP+E++ PKP Y+G++ + F D PPP + K+RK ++ ++ + EK ++ WDP + K+T DPYKTL V+R+SY T+E KL+ EF QYGPI+ +RLV D GKP+GYAFIEFE+E DMK+AYK+ADG+KID RR+LVD+ERGR +K W PR+ GGGLG TR G Sbjct: 9 LLLMFVARPPLEYIAPIPKPQLPNYSGLAAFKSSFSADPPPPPATKIESRDQIKQRKIEQK---VQQNTEKNLKSLKQWDPHSNTKSTGDPYKTLFVSRISYKTSESKLKNEFSQYGPIKKIRLVTDQVTGKPKGYAFIEFEKERDMKIAYKQADGQKIDDRRVLVDIERGRVIKNWKPRKYGGGLGNTRAG 197 The following BLAST results are available for this feature:
BLAST of EWM22649.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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