|
|
Properties
| Property Name | Value |
|---|
| Product | u1 small nuclear ribonucleoprotein 70 |
| Orig transcript id | gnl|cribi|Naga_100023g50.3965.mrna |
| Orig protein id | gnl|cribi|Naga_100023g50.3965 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:470104..471389 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8061 ID=rna8061|Name=rna8061|organism=Nannochloropsis gaditana|type=mRNA|length=3070bp
CTCCCCATACAGCACCTCGCCAAGTCTGATGAGCGAGGAAAGAAAGCAGG
GAGGCCTGACACATGTCCTCGGGCGGCCGCGGGGAACGGCGCAGTAAAGG
TTCAACGTAATGCCACAGCCATGTACAGGAGAGAGCAAGAGCGGCAAAGC
CTTGCAACAGGCACTTGAATCAAATGTGAAGGGCGGAAATAGCTATAAAA
CAAAGCTGCCTCGCCTGGGGGGGGCGCAGGAGGATGGGCCCTCTGCATGT
AATGGAGTTGGAAAAAGCAACCAACTAGGAAAATTAAAGCCGCTGCGCGA
CACATCTAAAAAAATGACATCAGCAACGATGTCTCTACATTCATCAACAC
CTGACATAAACAGCCCCCGTTCGCCTCTTGGTTCCCGTGGCCTGCCATCG
CCATTGCGGCGGACACTCCGGTCGTACCCCTCGGTCTCGACAATCCTTGC
TGAAAGCGATGAGGGTGCCAAGGCTGGCAACAGCGCTCTTGACATATTTA
GCCGGGGCCGTCACGCCCTGCTAGGAGGAAAGTCCCTCCCAACCACCCCA
GCAGGTAGAGTGGAGGCTTCCGCGGTCCCTCTCGAGATGCCGGCAGGATA
TTCAACGGCAGGCCCGCTCGCTGGTGGGAGAGTGTCGTCCACGCCTCCCA
GCGGCCGAGGCGCCCCCCAGTCCCATCCTTTGCGACAGGTGGAGCTTTTG
CATACGGCGGGCACGGACGTGGCCAGAGGGCCTCGTCTTTCCCGACACGC
GCCGCTCCCGTCCTTCCTGCCGCGAAACGAAGGGGCCGGACAGCCCCCGA
ATCCCACGTTAGGCTCACAGCGGGGCTCCTTGACACCCCTGGCAAGCCTC
CCCTCACGGCCGAGACCCCTTCCACATGCAAGTCCCGCGGCCATGGGCAG
CACCGGCGGGAACCTGAGCCCGGGAGGTGGCTCTCGCTGCCTGAATCCCT
CTTCTCCCTTGCAGGTCTCGCGCACGCGCAGCTCTCCGTCCCGGACCGGC
TCTGCCGCCCCTCCTCCTCCCCTCATCCGGGCCCTCAGTGCGGGGACCAA
GGGCAGACTCCACGCCGACGCCCCCCCTGGTCCAGGGGCCGAGGATGGGG
TCCGCAGTCCGGGCGGTGGCAAAACTGTCCGTGCTCGGGGCCGAAGTGAG
CCCCAAGTTCCTTCCTCCTCCCGCCCTTTTGACCCTATCGCGCCCCCGGA
CAAGGACTGCCCGCCACTCTCTTCCCGGCCGCCCCCAGAAGGCCCTCGGG
CTGGCAAGGCTCGGCGCTCGAAAAGCTTTTCTGGTGAACATGATGAGGCA
CTCTTACCTCCGCTGCCATCTCCCTTGCAGATGGACCTTACCCAGAGCAT
TAGCTCAGGCGTTCCTACTTGCAAGAGCAGTAACAGTATCAGCAGCAGTC
ACGGCAGCAGCAGCAGCGCGGACACGAGCACAAGGTCGGCTCAGACGAAG
AAAGACAGGAAAGGGAGTTCCAATAGAAGAAGCCGGAGCAGCAGCTCCTG
TGGGCTTTCCGGGGACAAAGGGCACACGGGATGTGGCAGTGACACAGAGA
AGAGGGCCCGGACGGCTCACAAGAAAGGATTGTTGATTGAAGCGCTCCGA
GAGCTGGAAGTAGGGCTACGCGAGACGCCCGCTTTAGACGAAGGACGACG
AGGCAGCGGCCGTTGTGAAGACGATGAAATGTCGAGAAATGGGAGCACAG
CAGGAGGGAGACAAGGGGCGCGGGCGGCGCCAGCGGCTTACCCGCGCGAG
TTGGTGGCTGTGTGGTGCAAAGTCCGCGAAGAGGCCGCCCGGACCGAGCC
GGCCGAAGGGGTCCCTCCTAGGGAGGACAGGCCCCGGGCGCCGAAGGCCG
GTGGAGGCGAAGGAAACAGGGAAGAGCTCGTAGGCATGGGCCCCGCGGCC
TTGCGGGCCCGAATTTCTCGAGACTTTTTCGTGAAACTGCCGTTAAAGGA
GATGTCTTTGCTTGTCCAGTATTTCTCGGACCCGCCCAATCTCTCGAGCA
GGCTGCTCGGGACCTCTCCCCTTTTCTCCGCAACCGGCAGCCCCTCAAAC
CCGGAGAAGCACCAGCAGCCACAACCGCTGCAACAGGGGCCGGTAGTGGA
CTATGCCTTGGTCCGGGACTTCCTGGATCTGCCTGAGCGACCCCCGGCCG
TCGACAGCACAGCAACCGATAGAGGTGAAACCATCCCTTCTTCTGAAGCA
GGGAATATGCCCAGCAAAGTCCTCTCGTCTACATTTCTCCCGGGCGGTTT
TGGCCCCGGTCGTCTCCGACGCTCGATACTACACGAGGAGGCGGCTCGGG
CAGAGCTGGCGCACGTCCCGATGGACGGCGCCTCCAGAAAACTTCTGGAA
AGATTAGCGGAGGCGGCTGCCGCCTTGGACGTGTACAAAATGGATGACAC
CTTCCAGATCTACCATGGAATGAGCACGTGGGGCCCAGGCACCACCAACC
TCGGCAAATCCTGCCGTGACCACCGCCGATCAGTCGCCGGCGGCGCAAAG
AGTGGAAAGAGGAGCAATGAAAGCAGCGGCCAGAGTAGAGCCTCGGAGAG
GCTGGTGCTCGTAGAAGACTTTGAGTCGCTGGTAGCGAAGGGACTACGCG
TGGAATTGACGCCTTCAGAGGTCACCCTGCTGAAGGAGTGGTTCCTGGCT
CATCCGACAGGGCCCGAGGAAAGAGCAGAGATGGGGCATGACAGGGACAG
AGCCCCACATCGTCTCGATTTCAATCATTTCCTGCAGCAGTTCTGGGCGC
TAGGGGCTGCGGCAAAACGGCCAGGCAATAGGTTGTTGAAGGAGCTGTGC
ATATCGAATTATGGTCGTGTGACATCTCTCGAATCTCGTTACAGGACCAA
CCAGCGGATTTATGGCGTACTAAGATGGATAACCACAAGTAAGGATATTA
CTTCCGCACGTAAAGCATTAAGAACGCAACCGCGTATTCGTCGACCTGCG
CGGGTAGAAAGGAGTGTATGCCTCTGCCTCGTATCGCAAAGGCAGGATTT
TCAGGTAGAACACGGCACAGGCGTCAAAAGTGATGATGCCAGAGCTTGGA
CGGTGTCTGCTCTTGGATGA back to topprotein sequence of rna8061 >rna8061-protein ID=rna8061-protein|Name=rna8061|organism=Nannochloropsis gaditana|type=polypeptide|length=309bp
MRAMFEPRPPVEFLRLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYK
ERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDT
TEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRAD
GKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGG
AGGGAGGGAVVREESSRGGGESYRARSRSPGRRADRERSRDRGGGDRHRG
DRGGDRRRSRSRSRDRRDDRGRDRGDRGGKRRRSRSNDGRYGPAGGGDYY
GPGGDKRRR back to topmRNA from alignment at KK037247.1:470104..471389+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8061 ID=rna8061|Name=rna8061|organism=Nannochloropsis gaditana|type=mRNA|length=1286bp|location=Sequence derived from alignment at KK037247.1:470104..471389+ (Nannochloropsis gaditana)
AAAGTTAGAGAATCAATGTTCCTTGAATCGTTTCCTATGCCCCATGAAAC
ACAGACATGCGCGCCATGTTCgagcctcgccctccggtCGAGTTCCTGCG
TCTCGCCCCCAAACCCCCTCCGCGACCTTACACGGGAATTTCTCAGTACG
TTGGGCTTTTCGAAACGGAtgagccccctcctcgagaACGCTTTCTTTCG
TACAAAGAACGCAAAGCAGCCGAGCGCGCCGCGTTGATGAAAGTGCATGC
GGAAAAAGttgagatggaggtggaggactggGATCCGAAAAAGGACGAAA
AGGCCACGGAGGACCCGTACAAGACGTTGATGGTCGCCAGACTTTCCTAC
GATACAACTGAGAAAAAATTGAGGAGGGAATTTGAGCAGTATGGACCGAT
CCAATCCATGAGGTTGGTGATGGACGCGGATGGGAAGCCAAGGGGGTACG
CTTTTATAGAATTTGAGCGTGAGTCGGACATGAAGATGGCATATAAACGT
GCTGATGGGAAGAAAATTGATGGACGGAGGATTCTGGTGGACgttgagag
gggaagaacaGTGAAGGGATGGGTACCGCGGCGTTTGGGAGGAGGTTTgg
gcgggacgaggaagggacccGAAGACGAAACcacagggcgaggggcgggt
ggaggggcgggtggaggggcgggtggaggggcggTCGTAAGGGAAGAATC
AAGccgcggaggtggagagagtTATCGTGCCCGCAGCCGAAGTCCAGGTA
GACGTGCGGATAGGGAGCGGAGCCGTgaccgtggtggtggcgataGACAT
AGGGGTGATAGAGGAGGGGATCGGCGGCGGTCTCGCAGTCGTTCGCGGGA
TCGGCGGGATgatcgaggaagggacagaggagaccggggagggaagcgtc
GGCGTAGTCGAAGCAATGATGGTAGGTACGGGCctgcaggtggtggtgac
TATTACGGCCCAGGCGGCGACAAACGGCGCCGATAACGTTTCGTGTCTTG
GCTGTGTGGACGAATGCACGAATGTGGGTAAGGACGTCGAGAGGGAGCAT
TGTTGGAAAATCATTAAAGCAATCGAATTGTTCAATAACTTACGTCACGT
ACATTTAAGAACAGAGGGAAATTAGGTGATGTAAGCATAAGCTAATATAT
AGAACAATTTGGTGCGTATAATAAAAGCTTGAAGTCAGCATATGCTTCCA
ATGTCTGGCTACGCGGTGCTATTTTCTTTGGTATTACGAAATCGCCCTAA
TGATGAATTTATGCAACGATTTATGTGCGTTCGCGC back to topCoding sequence (CDS) from alignment at KK037247.1:470104..471389+ >rna8061 ID=rna8061|Name=rna8061|organism=Nannochloropsis gaditana|type=CDS|length=930bp|location=Sequence derived from alignment at KK037247.1:470104..471389+ (Nannochloropsis gaditana)
ATGCGCGCCATGTTCgagcctcgccctccggtCGAGTTCCTGCGTCTCGC
CCCCAAACCCCCTCCGCGACCTTACACGGGAATTTCTCAGTACGTTGGGC
TTTTCGAAACGGAtgagccccctcctcgagaACGCTTTCTTTCGTACAAA
GAACGCAAAGCAGCCGAGCGCGCCGCGTTGATGAAAGTGCATGCGGAAAA
AGttgagatggaggtggaggactggGATCCGAAAAAGGACGAAAAGGCCA
CGGAGGACCCGTACAAGACGTTGATGGTCGCCAGACTTTCCTACGATACA
ACTGAGAAAAAATTGAGGAGGGAATTTGAGCAGTATGGACCGATCCAATC
CATGAGGTTGGTGATGGACGCGGATGGGAAGCCAAGGGGGTACGCTTTTA
TAGAATTTGAGCGTGAGTCGGACATGAAGATGGCATATAAACGTGCTGAT
GGGAAGAAAATTGATGGACGGAGGATTCTGGTGGACgttgagaggggaag
aacaGTGAAGGGATGGGTACCGCGGCGTTTGGGAGGAGGTTTgggcggga
cgaggaagggacccGAAGACGAAACcacagggcgaggggcgggtggaggg
gcgggtggaggggcgggtggaggggcggTCGTAAGGGAAGAATCAAGccg
cggaggtggagagagtTATCGTGCCCGCAGCCGAAGTCCAGGTAGACGTG
CGGATAGGGAGCGGAGCCGTgaccgtggtggtggcgataGACATAGGGGT
GATAGAGGAGGGGATCGGCGGCGGTCTCGCAGTCGTTCGCGGGATCGGCG
GGATgatcgaggaagggacagaggagaccggggagggaagcgtcGGCGTA
GTCGAAGCAATGATGGTAGGTACGGGCctgcaggtggtggtgacTATTAC
GGCCCAGGCGGCGACAAACGGCGCCGATAA back to top
|