EWM22649.1, cds8039 (CDS) Nannochloropsis gaditana

Overview
NameEWM22649.1
Unique Namecds8039
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:470160..471089 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22649.1
Productu1 small nuclear ribonucleoprotein 70
Orig transcript idgnl|cribi|Naga_100023g50.3965.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:470160..471089 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR022023U1snRNP70_N
IPR000504RRM_dom
Homology
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|585103214|gb|EWM22649.1| (u1 small nuclear ribonucleoprotein 70 [Nannochloropsis gaditana])

HSP 1 Score: 590.497 bits (1521), Expect = 0.000e+0
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0
Query:    1 MRAMFEPRPPVEFLRLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSRGGGESYRARSRSPGRRADRERSRDRGGGDRHRGDRGGDRRRSRSRSRDRRDDRGRDRGDRGGKRRRSRSNDGRYGPAGGGDYYGPGGDKRRR 309
            MRAMFEPRPPVEFLRLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSRGGGESYRARSRSPGRRADRERSRDRGGGDRHRGDRGGDRRRSRSRSRDRRDDRGRDRGDRGGKRRRSRSNDGRYGPAGGGDYYGPGGDKRRR
Sbjct:    1 MRAMFEPRPPVEFLRLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSRGGGESYRARSRSPGRRADRERSRDRGGGDRHRGDRGGDRRRSRSRSRDRRDDRGRDRGDRGGKRRRSRSNDGRYGPAGGGDYYGPGGDKRRR 309          
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|953497759|emb|CEG40519.1| (u1 snrnp 70k protein [Plasmopara halstedii])

HSP 1 Score: 223.016 bits (567), Expect = 1.133e-67
Identity = 125/236 (52.97%), Postives = 165/236 (69.92%), Query Frame = 0
Query:    1 MRAMFEPRPPVEFL-RLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPK-KDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSRGGGESYRARSRSPGRRA 234
            ++ +FEP PP++ L RL  +  P PYTG++ ++ +FET+ PPPR    + KER+   R   M  +  KV+ +   WDP  +D + T+D YKTL V R+SY+TTE++LR EFEQYG I+S+RLV DA+GK RGY FIE+E+E+D+K AYK ADGKKIDGRR++VDVERGRTV+ W+PR+ GGG+G TRKG  D    + +G  A G    GAV  E +SRGG E  R RSRS GR A
Sbjct:   32 LKVLFEPNPPLDHLPRLVKRKMP-PYTGLAGFLDVFETETPPPRAVMETPKERQERRRQEKMLANDAKVQEDRAKWDPNAEDPRKTQDAYKTLFVGRISYETTEQQLRHEFEQYGSIKSVRLVEDAEGKSRGYGFIEYEKEADLKAAYKYADGKKIDGRRVVVDVERGRTVRDWLPRKFGGGIGETRKGGADVNV-KYSGREAIGHFQVGAVRDEGASRGGREPLRDRSRSRGRAA 265          
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|298712969|emb|CBJ26871.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 211.075 bits (536), Expect = 4.680e-63
Identity = 107/192 (55.73%), Postives = 137/192 (71.35%), Query Frame = 0
Query:    1 MRAMFEPRPPVEFLRLAPKPPPRPYTGISQYV------GLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRK 186
            MRAMFEP PP+EF +   K  P    G++  +       LFE   PPP E+F + +++ A   AA  K   E ++ ++  W+PK D K   D YKTL +A++SYDTTEKKLRREFEQ+G IQS+R+V D DGKPRGYAF+E+E E DM++AYKR DG+KIDGRR+LVDVERGRTV+ W+PRR GGGLG +RK
Sbjct:   27 MRAMFEPPPPLEFKKSVCKRKPPTVEGVAAMLKGKGAANLFEKGVPPPPEKFETPRQKHARIAAAKKKTDEEGLKDKISKWNPKDDPKTKGDAYKTLFIAKISYDTTEKKLRREFEQFGRIQSIRMVQDEDGKPRGYAFVEYENEDDMRVAYKRGDGRKIDGRRVLVDVERGRTVRNWLPRRFGGGLGDSRK 218          
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|570970681|gb|ETP33800.1| (hypothetical protein F442_17698 [Phytophthora parasitica P10297])

HSP 1 Score: 204.527 bits (519), Expect = 2.109e-60
Identity = 120/237 (50.63%), Postives = 163/237 (68.78%), Query Frame = 0
Query:    1 MRAMFEPRPPVEFL-RLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPK-KDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSR-GGGESYRARSRSPGRRA 234
            ++ MFEP PP++ L RL  +  P PYTG++ ++ +FE+  PPPR+   + KER+   R   M  +  K++ +   WDP  +D + T+D YKTL V R+SY+TTE++LR EFEQYGP++S+RLV D++GK RGY F+E+E+E+DMK AYK ADGKKIDGRR++VDVERGRTV  W+P++ GGG+G TRKG  D    + +G  A G    GA   E +SR G  E  R RSRS GR A
Sbjct:   32 LKVMFEPNPPLDHLPRLVKRKMP-PYTGLAGFLDVFESVNPPPRDVQETPKERRERRRQEKMAANDAKMQEDRAKWDPNAEDPRKTKDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDSEGKSRGYGFVEYEKEADMKSAYKYADGKKIDGRRVVVDVERGRTVTDWLPKKFGGGIGETRKGGADVNV-KYSGREAIGHFQVGAARDEGASRYGAHEPPRDRSRSRGRAA 266          
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|566012948|gb|ETI35859.1| (hypothetical protein F443_17843 [Phytophthora parasitica P1569] >gi|567950454|gb|ETK76165.1| hypothetical protein L915_17367 [Phytophthora parasitica] >gi|567979124|gb|ETL29606.1| hypothetical protein L916_17259 [Phytophthora parasitica] >gi|568008610|gb|ETL82827.1| hypothetical protein L917_17092 [Phytophthora parasitica] >gi|568038536|gb|ETM36064.1| hypothetical protein L914_17162 [Phytophthora parasitica] >gi|570940487|gb|ETP05744.1| hypothetical protein F441_17717 [Phytophthora parasitica CJ01A1] >gi|970640252|gb|KUF82883.1| U1 small nuclear ribonucleoprotein 70 kDa [Phytophthora nicotianae])

HSP 1 Score: 204.527 bits (519), Expect = 2.233e-60
Identity = 120/237 (50.63%), Postives = 163/237 (68.78%), Query Frame = 0
Query:    1 MRAMFEPRPPVEFL-RLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPK-KDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSR-GGGESYRARSRSPGRRA 234
            ++ MFEP PP++ L RL  +  P PYTG++ ++ +FE+  PPPR+   + KER+   R   M  +  K++ +   WDP  +D + T+D YKTL V R+SY+TTE++LR EFEQYGP++S+RLV D++GK RGY F+E+E+E+DMK AYK ADGKKIDGRR++VDVERGRTV  W+P++ GGG+G TRKG  D    + +G  A G    GA   E +SR G  E  R RSRS GR A
Sbjct:   32 LKVMFEPNPPLDHLPRLVKRKMP-PYTGLAGFLDVFESVNPPPRDVQETPKERRERRRQEKMAANDAKMQEDRAKWDPNAEDPRKTKDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDSEGKSRGYGFVEYEKEADMKSAYKYADGKKIDGRRVVVDVERGRTVTDWLPKKFGGGIGETRKGGADVNV-KYSGREAIGHFQVGAARDEGASRYGAHEPPRDRSRSRGRAA 266          
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|675174937|ref|XP_008896353.1| (hypothetical protein PPTG_04234 [Phytophthora parasitica INRA-310] >gi|568104065|gb|ETN18722.1| hypothetical protein PPTG_04234 [Phytophthora parasitica INRA-310] >gi|570316625|gb|ETO64573.1| hypothetical protein F444_17880 [Phytophthora parasitica P1976])

HSP 1 Score: 201.445 bits (511), Expect = 3.371e-59
Identity = 117/232 (50.43%), Postives = 160/232 (68.97%), Query Frame = 0
Query:    1 MRAMFEPRPPVEFL-RLAPKPPPRPYTGISQYVGLFETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPK-KDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSR-GGGESYRARSRS 229
            ++ MFEP PP++ L RL  +  P PYTG++ ++ +FE+  PPPR+   + KER+   R   M  +  K++ +   WDP  +D + T+D YKTL V R+SY+TTE++LR EFEQYGP++S+RLV D++GK RGY F+E+E+E+DMK AYK ADGKKIDGRR++VDVERGRTV  W+P++ GGG+G TRKG  D    + +G  A G    GA   E +SR G  E  R RSRS
Sbjct:   32 LKVMFEPNPPLDHLPRLVKRKMP-PYTGLAGFLDVFESVNPPPRDVQETPKERRERRRQEKMAANDAKMQEDRAKWDPNAEDPRKTKDAYKTLFVGRISYETTEQQLRHEFEQYGPVKSVRLVEDSEGKSRGYGFVEYEKEADMKSAYKYADGKKIDGRRVVVDVERGRTVTDWLPKKFGGGIGETRKGGADVNV-KYSGREAIGHFQVGAARDEGASRYGAHEPPRDRSRS 261          
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|1179509661|ref|XP_020677566.1| (U1 small nuclear ribonucleoprotein 70 kDa isoform X1 [Dendrobium catenatum])

HSP 1 Score: 205.297 bits (521), Expect = 1.374e-58
Identity = 110/216 (50.93%), Postives = 145/216 (67.13%), Query Frame = 0
Query:    1 MRAMFEPRPPVEFLRLAPKPPPR-----PYTGISQYVGLF----ETDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDAD-GKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPED---ETTGRGAGGGAGG 203
            +  +FEPRPP+E+     KPPP      PY+G++QYV  F    + +  PP ++  +  +RKA      +++ A+K   E+E +DP KD  AT DPYKTL VARLSY+TTE +++REFE YGPI+ +RL+MD +  KPRGYAFIE+    DMK AYK+ADG+K+D RR+LVDVERGRTV  W PRRLGGGLG TR G E+   + +GR     A G
Sbjct:   46 LLKLFEPRPPLEY-----KPPPEKRKCPPYSGMAQYVSHFAEPGDEEYAPPVQKAETPAQRKARIHKLRLELGAQKAAEELEKYDPHKDSNATGDPYKTLFVARLSYETTEHRIKREFEAYGPIKRVRLIMDKETNKPRGYAFIEYMHTRDMKTAYKQADGRKLDNRRVLVDVERGRTVPNWRPRRLGGGLGSTRVGGEEVNQKHSGREQQQAASG 256          
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|902212661|gb|KNA17060.1| (hypothetical protein SOVF_083570 [Spinacia oleracea])

HSP 1 Score: 203.756 bits (517), Expect = 2.148e-58
Identity = 114/215 (53.02%), Postives = 138/215 (64.19%), Query Frame = 0
Query:    1 MRAMFEPRPPVEFLRLAPKPPPR-----PYTGISQYVGLFETDE-----PPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDAD-GKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGG 204
            +  +FEPRPP+E+     KPPP      PY G+ QYV LF   E     PP +E     + R    +  L K  A+ VE E+E +DP+ D  ATEDPYKTL VARLSY+T+E +L+REFE YGPI+ +++V D +  KPRGYAFIEF    DMK AYK+ADG+KIDGRR+LVDVERGRTV  W PRRLGGGLG TR G ED            GG
Sbjct:   45 LLKLFEPRPPLEY-----KPPPEKRKCPPYMGMGQYVNLFPDPEDPEYAPPVKEGETPTQRRARVHQLRLEKGAAKAVE-ELEKYDPQSDANATEDPYKTLFVARLSYETSESRLKREFETYGPIKRVKMVYDKETNKPRGYAFIEFSHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEDVNQNNSTREPQAGG 253          
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|146197791|dbj|BAF57614.1| (snRNP70K protein, partial [Dugesia japonica])

HSP 1 Score: 196.438 bits (498), Expect = 6.450e-57
Identity = 108/201 (53.73%), Postives = 137/201 (68.16%), Query Frame = 0
Query:    1 MRAMFEPRPPVEFLRLAPKPP---PRPYTGISQYVGLFE----TDEPPPRERFLSYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDA-DGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETT 193
            + A+F  R P+ F     +P    P PYTGI+QYV LFE    T  PP  E     +ERK  E+A  +   A KVE ++  W+P +    T+DPYKTL VAR++YDTTE K+RREFE YGPI+++R+V +A + KPRGY FIE+E E DM  AYK ADGKKIDG R+LVDVER RTV+ W PRRLGGGLG TR+GP ++ +
Sbjct:   14 LLALFAARDPIPFAIPIERPKHHRPLPYTGIAQYVKLFEDPSETPIPPKVETREEKRERKRKEKAEQI---AYKVEQDLALWNPNEIPSGTKDPYKTLFVARINYDTTENKIRREFEGYGPIKTIRMVKNAMNNKPRGYCFIEYEHERDMHAAYKNADGKKIDGHRVLVDVERARTVRNWRPRRLGGGLGNTRRGPPEQNS 211          
BLAST of EWM22649.1 vs. NCBI_GenBank
Match: gi|1160556393|ref|XP_020436093.1| (U1 small nuclear ribonucleoprotein 70 kDa protein [Polysphondylium pallidum PN500] >gi|281209808|gb|EFA83976.1| U1 small nuclear ribonucleoprotein 70 kDa protein [Polysphondylium pallidum PN500])

HSP 1 Score: 197.208 bits (500), Expect = 2.152e-56
Identity = 96/192 (50.00%), Postives = 130/192 (67.71%), Query Frame = 0
Query:    1 MRAMFEPRPPVEFLRLAPKPPPRPYTGISQYVGLFETDEPPPRERFL----SYKERKAAERAALMKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMD-ADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKG 187
            +  MF  RPP+E++   PKP    Y+G++ +   F  D PPP    +      K+RK  ++   ++ + EK    ++ WDP  + K+T DPYKTL V+R+SY T+E KL+ EF QYGPI+ +RLV D   GKP+GYAFIEFE+E DMK+AYK+ADG+KID RR+LVD+ERGR +K W PR+ GGGLG TR G
Sbjct:    9 LLLMFVARPPLEYIAPIPKPQLPNYSGLAAFKSSFSADPPPPPATKIESRDQIKQRKIEQK---VQQNTEKNLKSLKQWDPHSNTKSTGDPYKTLFVSRISYKTSESKLKNEFSQYGPIKKIRLVTDQVTGKPKGYAFIEFEKERDMKIAYKQADGQKIDDRRVLVDIERGRVIKNWKPRKYGGGLGNTRAG 197          
The following BLAST results are available for this feature:
BLAST of EWM22649.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103214|gb|EWM22649.1|0.000e+0100.00u1 small nuclear ribonucleoprotein 70 [Nannochloro... [more]
gi|953497759|emb|CEG40519.1|1.133e-6752.97u1 snrnp 70k protein [Plasmopara halstedii][more]
gi|298712969|emb|CBJ26871.1|4.680e-6355.73conserved unknown protein [Ectocarpus siliculosus][more]
gi|570970681|gb|ETP33800.1|2.109e-6050.63hypothetical protein F442_17698 [Phytophthora para... [more]
gi|566012948|gb|ETI35859.1|2.233e-6050.63hypothetical protein F443_17843 [Phytophthora para... [more]
gi|675174937|ref|XP_008896353.1|3.371e-5950.43hypothetical protein PPTG_04234 [Phytophthora para... [more]
gi|1179509661|ref|XP_020677566.1|1.374e-5850.93U1 small nuclear ribonucleoprotein 70 kDa isoform ... [more]
gi|902212661|gb|KNA17060.1|2.148e-5853.02hypothetical protein SOVF_083570 [Spinacia olerace... [more]
gi|146197791|dbj|BAF57614.1|6.450e-5753.73snRNP70K protein, partial [Dugesia japonica][more]
gi|1160556393|ref|XP_020436093.1|2.152e-5650.00U1 small nuclear ribonucleoprotein 70 kDa protein ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8061rna8061Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications