EWM22635.1, cds8022 (CDS) Nannochloropsis gaditana

Overview
NameEWM22635.1
Unique Namecds8022
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:425725..426389 -
Alignment locationKK037247.1:425531..425597 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22635.1
Product40s ribosomal protein s15
Orig transcript idgnl|cribi|Naga_100023g32.3951.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:425725..426389 -
KK037247.1supercontigKK037247.1:425531..425597 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR023575Ribosomal_S19_SF
IPR005713Ribosomal_S19A/S15e
IPR002222Ribosomal_S19
Homology
BLAST of EWM22635.1 vs. NCBI_GenBank
Match: gi|585103200|gb|EWM22635.1| (40s ribosomal protein s15 [Nannochloropsis gaditana])

HSP 1 Score: 495.738 bits (1275), Expect = 2.671e-177
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0
Query:    1 MRTSYARPRIFGWVAARNEEDSLSLRTTIVTVAYFQGSPRCIPEWSSHDYKITFLMKSSLATPYFLALVIKLPLCACPSSPTLTETMADVEGLSAEEIARIAESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRKHKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLFNPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPLK 243
            MRTSYARPRIFGWVAARNEEDSLSLRTTIVTVAYFQGSPRCIPEWSSHDYKITFLMKSSLATPYFLALVIKLPLCACPSSPTLTETMADVEGLSAEEIARIAESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRKHKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLFNPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPLK
Sbjct:    1 MRTSYARPRIFGWVAARNEEDSLSLRTTIVTVAYFQGSPRCIPEWSSHDYKITFLMKSSLATPYFLALVIKLPLCACPSSPTLTETMADVEGLSAEEIARIAESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRKHKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLFNPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPLK 243          
BLAST of EWM22635.1 vs. NCBI_GenBank
Match: gi|166952367|gb|ABZ04266.1| (ribosomal protein rps15 [Lineus viridis])

HSP 1 Score: 211.846 bits (538), Expect = 1.408e-66
Identity = 97/145 (66.90%), Postives = 122/145 (84.14%), Query Frame = 0
Query:   99 ARIAESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRKHKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLFNPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPLK 243
            A IAE +K+R+F+K+T+RGVDLD+LLD++ E L+ LFT R RRR  R LKRK   L+K+L+ AKK  GPLEKP +VKTHLRD++I PE+IGSIV +YNGK FN +EIKPEM+G Y GEFS++Y+PVKHGRPGIG+T+SSRFIPLK
Sbjct:    5 AEIAEKKKRRTFRKYTYRGVDLDQLLDMSSEMLMELFTCRPRRRFSRGLKRKPMALMKRLRKAKKEAGPLEKPEVVKTHLRDMIILPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 149          
BLAST of EWM22635.1 vs. NCBI_GenBank
Match: gi|700589066|gb|AIU94794.1| (hypothetical protein [Phragmatopoma lapidosa])

HSP 1 Score: 210.69 bits (535), Expect = 4.061e-66
Identity = 101/157 (64.33%), Postives = 123/157 (78.34%), Query Frame = 0
Query:   87 MADVEGLSAEEIARIAESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRKHKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLFNPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPLK 243
            MADV+   A      A+ RK+R+F+KFTFRGVDLD+LLD++ E+L+ LF  R RRR  R LKRK   LIK+L+ AKK   PLEKP  VKTHLRD++I PE+IGSIV +YNGK FN IEIKPEM+G Y  EFS++Y+PVKHGRPGIG+T+SSRFIPLK
Sbjct:    1 MADVDAQEA------ADKRKRRTFRKFTFRGVDLDQLLDMSTEQLMELFHCRARRRFSRGLKRKPMALIKRLRKAKKEAPPLEKPECVKTHLRDMIIVPEMIGSIVGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVKHGRPGIGATHSSRFIPLK 151          
BLAST of EWM22635.1 vs. NCBI_GenBank
Match: gi|1207925267|ref|XP_021351718.1| (40S ribosomal protein S15-like [Mizuhopecten yessoensis])

HSP 1 Score: 210.69 bits (535), Expect = 4.151e-66
Identity = 94/151 (62.25%), Postives = 124/151 (82.12%), Query Frame = 0
Query:   93 LSAEEIARIAESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRKHKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLFNPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPLK 243
            ++ +E   + E +KKR+F+K+TFRGVDLD+LLD++ E+L+ L TSR RRR  R LKRK   LIK+L+ AKK   PLEKP +VKTHLR+++I PE+IGS++ +YNGK FN IE+KPEM+G Y GEFS++Y+PVKHGRPGIG+T+SSRFIPLK
Sbjct:    1 MADQETQDLLEKKKKRTFRKYTFRGVDLDQLLDMSSEQLMELLTSRARRRFSRGLKRKPMALIKRLRKAKKEAKPLEKPEVVKTHLRNMIIVPEMIGSVIGVYNGKTFNQIEVKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 151          
BLAST of EWM22635.1 vs. NCBI_GenBank
Match: gi|1026980086|ref|XP_016609073.1| (40S ribosomal protein S15 [Spizellomyces punctatus DAOM BR117] >gi|907095369|gb|KND01034.1| 40S ribosomal protein S15 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 209.92 bits (533), Expect = 9.312e-66
Identity = 97/142 (68.31%), Postives = 119/142 (83.80%), Query Frame = 0
Query:  102 AESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRKHKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLFNPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPLK 243
            AE +KKR+F+KFTFRGVDLD+LLDL+ E+L+ L  +R RRR QR LKRK   LIKKL+ AKK   P EKP +VKTHLRD++I PE+IGS+V +YNGK FN +EIKPEM+G Y GEFS++Y+PVKHGRPGIG+T+SSRFIPLK
Sbjct:   11 AELKKKRTFRKFTFRGVDLDQLLDLSSEQLMELVHARARRRFQRGLKRKPMGLIKKLRKAKKEATPGEKPEVVKTHLRDMIIVPEMIGSVVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 152          
BLAST of EWM22635.1 vs. NCBI_GenBank
Match: gi|527191366|gb|EPS62228.1| (hypothetical protein M569_12564 [Genlisea aurea])

HSP 1 Score: 208.764 bits (530), Expect = 2.230e-65
Identity = 101/157 (64.33%), Postives = 125/157 (79.62%), Query Frame = 0
Query:   87 MADVEGLSAEEIARIAESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRKHKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLFNPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPLK 243
            MADVE   A     +A   KKR+FKKF+FRGVDLD LLD+T +EL+ LF +R RRR QR LKRK   LIKKL+ AK    P EKPA+V+THLR+++I PE+IGS++ +YNGK+FNP+EIKPEM+G Y  EFS+SY+PVKHGRPGIG+T+SSRFIPLK
Sbjct:    1 MADVEADVA-----VAGVPKKRTFKKFSFRGVDLDALLDMTTDELVNLFNARARRRFQRGLKRKPMALIKKLRKAKLEAPPGEKPALVRTHLRNMIIVPEMIGSVLGVYNGKIFNPVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152          
BLAST of EWM22635.1 vs. NCBI_GenBank
Match: gi|1130850232|dbj|GAV69608.1| (Ribosomal_S19 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 208.379 bits (529), Expect = 3.304e-65
Identity = 100/157 (63.69%), Postives = 126/157 (80.25%), Query Frame = 0
Query:   87 MADVEGLSAEEIARIAESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRKHKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLFNPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPLK 243
            MADVE     E+A  A   KKR+FKKF+FRGVDLD LLD++ +EL+ LFT+R RRR QR LKRK   LIKKL+ AKK+  P EKP +V+THLR+++I PE+IGS++ +YNG+ FN +EIKPEM+G Y  EFS+SY+PVKHGRPGIG+T+SSRFIPLK
Sbjct:    1 MADVE----TEVA--AGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKPMALIKKLRKAKKDAAPGEKPDVVRTHLRNMIIVPEMIGSVIGVYNGRTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151          
BLAST of EWM22635.1 vs. NCBI_GenBank
Match: gi|802665918|gb|KKA65160.1| (ribosomal protein [Pristionchus pacificus])

HSP 1 Score: 207.994 bits (528), Expect = 5.765e-65
Identity = 95/151 (62.91%), Postives = 124/151 (82.12%), Query Frame = 0
Query:   93 LSAEEIARIAESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRKHKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLFNPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPLK 243
            +S ++ A +AE +KKR+F+KF++RGVDLD+LLD+  ++L  LF +R RRRL R LKRKH  L+ +L+ AKK    LEKPA +KTHLRD+VI PE++GS+V IYNGK+FN  EIKPEM+G Y GEF++SY+PVKHGRPGIG+T+SSRFIPLK
Sbjct:    1 MSGQDEAHLAELKKKRTFRKFSYRGVDLDQLLDMDRQKLAELFKARPRRRLSRGLKRKHLALLARLQKAKKACAVLEKPATIKTHLRDMVILPEMVGSVVGIYNGKVFNQTEIKPEMIGHYLGEFAISYKPVKHGRPGIGATHSSRFIPLK 151          
BLAST of EWM22635.1 vs. NCBI_GenBank
Match: gi|1063246692|gb|ODQ69218.1| (hypothetical protein LIPSTDRAFT_6880 [Lipomyces starkeyi NRRL Y-11557])

HSP 1 Score: 207.994 bits (528), Expect = 6.023e-65
Identity = 96/148 (64.86%), Postives = 121/148 (81.76%), Query Frame = 0
Query:   96 EEIARIAESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRKHKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLFNPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPLK 243
            +E    AE+RKKR F+ F+FRGVDL+ LLDL+PE+ + L  +R RRRLQR LKR+   LIKKL+ A++   P EKPA+VKTHLRD++I PE+IGS++ IYNGK+FN +EI+PEMVG Y GEFS+SY PVKHGRPGIG+T+SSRFIPLK
Sbjct:    7 QEAIDAAENRKKRQFRTFSFRGVDLNDLLDLSPEKFVDLVHARARRRLQRGLKRRPMGLIKKLRKARQEAKPNEKPAVVKTHLRDMIIVPEMIGSVIGIYNGKVFNQVEIRPEMVGFYLGEFSISYTPVKHGRPGIGATHSSRFIPLK 154          
BLAST of EWM22635.1 vs. NCBI_GenBank
Match: gi|1032642266|gb|OAQ23633.1| (ribosomal protein S19 [Mortierella elongata AG-77])

HSP 1 Score: 206.838 bits (525), Expect = 1.474e-64
Identity = 93/141 (65.96%), Postives = 121/141 (85.82%), Query Frame = 0
Query:  103 ESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRKHKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLFNPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPLK 243
            ++RKKR+F+KF++RG+DLDKLLDL+ E+L+ L  +R RRR QR LKRK   LIKKL+ AKK+   LEKPA+VKTHLR++++ PE+IGS+V +YNGK FN +EIKPEM+G Y GEFS++Y+PVKHGRPGIG+T+SSRFIPLK
Sbjct:   12 DARKKRTFRKFSYRGIDLDKLLDLSSEQLMDLVNARPRRRFQRGLKRKPMGLIKKLRQAKKDAPALEKPAVVKTHLRNMIVVPEMIGSVVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 152          
The following BLAST results are available for this feature:
BLAST of EWM22635.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103200|gb|EWM22635.1|2.671e-177100.0040s ribosomal protein s15 [Nannochloropsis gaditan... [more]
gi|166952367|gb|ABZ04266.1|1.408e-6666.90ribosomal protein rps15 [Lineus viridis][more]
gi|700589066|gb|AIU94794.1|4.061e-6664.33hypothetical protein [Phragmatopoma lapidosa][more]
gi|1207925267|ref|XP_021351718.1|4.151e-6662.2540S ribosomal protein S15-like [Mizuhopecten yesso... [more]
gi|1026980086|ref|XP_016609073.1|9.312e-6668.3140S ribosomal protein S15 [Spizellomyces punctatus... [more]
gi|527191366|gb|EPS62228.1|2.230e-6564.33hypothetical protein M569_12564 [Genlisea aurea][more]
gi|1130850232|dbj|GAV69608.1|3.304e-6563.69Ribosomal_S19 domain-containing protein [Cephalotu... [more]
gi|802665918|gb|KKA65160.1|5.765e-6562.91ribosomal protein [Pristionchus pacificus][more]
gi|1063246692|gb|ODQ69218.1|6.023e-6564.86hypothetical protein LIPSTDRAFT_6880 [Lipomyces st... [more]
gi|1032642266|gb|OAQ23633.1|1.474e-6465.96ribosomal protein S19 [Mortierella elongata AG-77][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8044rna8044Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications