rna8044, rna8044 (mRNA) Nannochloropsis gaditana

Overview
Namerna8044
Unique Namerna8044
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length645
Alignment locationKK037247.1:425297..426508 -

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Properties
Property NameValue
Product40s ribosomal protein s15
Orig transcript idgnl|cribi|Naga_100023g32.3951.mrna
Orig protein idgnl|cribi|Naga_100023g32.3951
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:425297..426508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100023g32gene7788Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8044rna8044-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22635.1cds8022Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8044 ID=rna8044|Name=rna8044|organism=Nannochloropsis gaditana|type=mRNA|length=645bp
ATGCAACGACAGGAACTGCGGGCATTCCTCTTGTGTGGCGCCGTATTGAC
CAGTCTCACTGTTATGTCCTTTTCTTTCAGTCTATTTTCGTTGGCCAGTC
GTAACGCGCTCTCCCTCTTATCGAATCGGAGCAGTAGATGGCGCTACGGG
CGAGTGCTTCCATCCGGACAAGCCTCCTCCCTACCCGATGCTCGTCAGTT
CCGAGTTGCGCCTTATTGCGAAATGCCTCGCAATGGGTTTGAGATTCCAC
ACGACCGTCTCGATTTCAGTTATTCTAGAAGTTCAGGCCCGGGAGGACAG
AATGTGAACAAACTGAATACCCGCGTGGAGTTGCGCTTTCACGTTGAGGA
CGCTGACTGGATCCCAGAGGACATGCGCCACCGGTTTCTTGAGCAGCAGC
GACACCGCGTGAACAAGCTGGGGGAGTTCGTCTTATCGTCTCAGGAGCAT
CGTACTCAGCTGAAGAACCGCGAAGAATGTGTGAGAAAGTTGGAGGAAGC
GTTGACGAGGGCAGCTGTGGTGCCGAAAAGGCGCAACATGCGCACAGGCT
TGACGGAGTGGGAGAAGGAGAACAGACTGCGGGAGAAAAAGAAACGGTCC
GAAAAGAAAGCGTCGCGCCGACGCAATGGTAAATGGGACGAGTAG
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protein sequence of rna8044

>rna8044-protein ID=rna8044-protein|Name=rna8044|organism=Nannochloropsis gaditana|type=polypeptide|length=243bp
MRTSYARPRIFGWVAARNEEDSLSLRTTIVTVAYFQGSPRCIPEWSSHDY
KITFLMKSSLATPYFLALVIKLPLCACPSSPTLTETMADVEGLSAEEIAR
IAESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRK
HKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLF
NPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPLK
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mRNA from alignment at KK037247.1:425297..426508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8044 ID=rna8044|Name=rna8044|organism=Nannochloropsis gaditana|type=mRNA|length=1212bp|location=Sequence derived from alignment at KK037247.1:425297..426508- (Nannochloropsis gaditana)
ATGGTTATGCAGGGCCTCCTTGGGATTCACAAACGCGTACTCAGTAACGT
GATGTCTTACGAGGAGCTGGCTATGTGCAGTCGGCCGTACGCGACTCCTT
GCGGAACGTAGAAGGTTTTATGAGGACCTCGTATGCCCGGCCACGAATTT
TTGGCTGGGTGGCAGCGAGGAATGAAGAGGACTCCCTTTCCTTGCGAACT
ACGATAGTGACGGTAGCATATTTTCAAGGCTCCCCGCGGTGTATTCCAGA
ATGGAGTTCACACGACTACAAAATTACGTTTTTGATGAAGAGCTCTCTCG
CCACTCCCTATTTTCTGGCATTGGTCATTAAACTTCCCTTGTGCGCTTGT
CCATCATCACCCACTTTGACAGAAACCATGGCTGACGTCGAGGGTTTGTC
CGCAGAGGAGATTGCTCGCATCGCGGAGTCGCGCAAGAAGCGCTCATTCA
AGAAATTTACTTTTCGCGGCGTGGATTTGGACAAGCTCTTGGACCTGACC
CCCGAAGAGCTCCTGCCCCTGTTCACATCGCGAGTCCGCCGGCGCCTCCA
ACGGCCTCTCAAGCGTAAGCATAAGACGTTGATTAAGAAGCTGAAAAACG
CCAAGAAAAACACAGGCCCCCTGGAGAAGCCAGCCATTGTCAAGACGCAC
CTTCGCGACTTGGTCATCACCCCGGAACTGATCGGTTCCATCGTGGCCAT
CTACAACGGCAAACTCTTCAACCCCATCGAAATCAAGCCCGAGATGGTTG
GCATGTATACTGGGGAGTTCTCCATGTCCTACCGGTGGGTGTTAGAGGGA
TTGACGAGGGAATTTACGGGAATGGTGGATTGAAGACGGGAATGGTGGAT
TGAGGGCCGCAGAAAGAAGGTTTAGAAGACTCAACCCTCACTTTTTCTCC
GCCCTCCCTAGACCTGTCAAGCACGGGCGACCCGGTATCGGCTCTACAAA
CTCCTCTCGCTTCATTCCTCTCAAGTAAATGTGATTTTTTCGGTGCACGA
GCTTGTGGCTGGCGGATGAGGCCAACGGACTTCTTATGTCGTCTGCTTTC
GCTCTCCCTGCTGGAGATGGTTGCCTTTTTCCTCTGACCTCTGTAGGGGC
GATAATGTAGAACAAAAGGCATCAAGAAATGGCAAGTGATGGACTGGTAA
AGGAATAAAATCATTGCCTTGCGAGGCCTCGGCCGTGAGCTTGCGAGACA
ACTGTCCGCCGA
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Coding sequence (CDS) from alignment at KK037247.1:425297..426508-

>rna8044 ID=rna8044|Name=rna8044|organism=Nannochloropsis gaditana|type=CDS|length=1464bp|location=Sequence derived from alignment at KK037247.1:425297..426508- (Nannochloropsis gaditana)
ACCTGTCAAGCACGGGCGACCCGGTATCGGCTCTACAAACTCCTCTCGCT
TCATTCCTCTCAAGTAAATGAGGACCTCGTATGCCCGGCCACGAATTTTT
GGCTGGGTGGCAGCGAGGAATGAAGAGGACTCCCTTTCCTTGCGAACTAC
GATAGTGACGGTAGCATATTTTCAAGGCTCCCCGCGGTGTATTCCAGAAT
GGAGTTCACACGACTACAAAATTACGTTTTTGATGAAGAGCTCTCTCGCC
ACTCCCTATTTTCTGGCATTGGTCATTAAACTTCCCTTGTGCGCTTGTCC
ATCATCACCCACTTTGACAGAAACCATGGCTGACGTCGAGGGTTTGTCCG
CAGAGGAGATTGCTCGCATCGCGGAGTCGCGCAAGAAGCGCTCATTCAAG
AAATTTACTTTTCGCGGCGTGGATTTGGACAAGCTCTTGGACCTGACCCC
CGAAGAGCTCCTGCCCCTGTTCACATCGCGAGTCCGCCGGCGCCTCCAAC
GGCCTCTCAAGCGTAAGCATAAGACGTTGATTAAGAAGCTGAAAAACGCC
AAGAAAAACACAGGCCCCCTGGAGAAGCCAGCCATTGTCAAGACGCACCT
TCGCGACTTGGTCATCACCCCGGAACTGATCGGTTCCATCGTGGCCATCT
ACAACGGCAAACTCTTCAACCCCATCGAAATCAAGCCCGAGATGGTTGGC
ATGTATACTGGGGAGTTCTCCATGTCCTACCGACCTGTCAAGCACGGGCG
ACCCGGTATCGGCTCTACAAACTCCTCTCGCTTCATTCCTCTCAAGTAAA
TGAGGACCTCGTATGCCCGGCCACGAATTTTTGGCTGGGTGGCAGCGAGG
AATGAAGAGGACTCCCTTTCCTTGCGAACTACGATAGTGACGGTAGCATA
TTTTCAAGGCTCCCCGCGGTGTATTCCAGAATGGAGTTCACACGACTACA
AAATTACGTTTTTGATGAAGAGCTCTCTCGCCACTCCCTATTTTCTGGCA
TTGGTCATTAAACTTCCCTTGTGCGCTTGTCCATCATCACCCACTTTGAC
AGAAACCATGGCTGACGTCGAGGGTTTGTCCGCAGAGGAGATTGCTCGCA
TCGCGGAGTCGCGCAAGAAGCGCTCATTCAAGAAATTTACTTTTCGCGGC
GTGGATTTGGACAAGCTCTTGGACCTGACCCCCGAAGAGCTCCTGCCCCT
GTTCACATCGCGAGTCCGCCGGCGCCTCCAACGGCCTCTCAAGCGTAAGC
ATAAGACGTTGATTAAGAAGCTGAAAAACGCCAAGAAAAACACAGGCCCC
CTGGAGAAGCCAGCCATTGTCAAGACGCACCTTCGCGACTTGGTCATCAC
CCCGGAACTGATCGGTTCCATCGTGGCCATCTACAACGGCAAACTCTTCA
ACCCCATCGAAATCAAGCCCGAGATGGTTGGCATGTATACTGGGGAGTTC
TCCATGTCCTACCG
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Synonyms
Publications