rna8043, rna8043 (mRNA) Nannochloropsis gaditana

Overview
Namerna8043
Unique Namerna8043
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length966
Alignment locationKK037247.1:424583..425227 +

Link to JBrowse

Properties
Property NameValue
Productpeptidyl-trna hydrolase mitochondrial-like protein
Orig transcript idgnl|cribi|Naga_100023g31.3956.mrna
Orig protein idgnl|cribi|Naga_100023g31.3956
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:424583..425227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100023g31gene7787Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8043rna8043-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22640.1cds8021Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8043 ID=rna8043|Name=rna8043|organism=Nannochloropsis gaditana|type=mRNA|length=966bp
ATGACACAGGAGGTTTTGCGGGTTCTAGCAGGTTTCAGCGCCCTGGGAGA
TAAGTACCGGAAAATGTTCGGGAATTTCTGTGTTCCCCAATTTCTCTTTC
TTGGGCTGATTCGAGTAGCTTGGACTCACTCGTCACAGCCGTGGACGTAC
TCAATGCCACCAAATGCGCTTGACGATGGGCCCCGGTTGCCGATCCCCGG
CTTCTGTAGAGACGGCGAGAGGCCTGCCGGCTATTTCAGGACGACATCAG
GAGATTTTTATGGCTCATCACTCGAGAAGTTTCTTCCCACGCGTCGCGCA
CAACCTTATCAATGGGCTCCTGACATGGTGGAGGACAACGGTGGGACAGT
CGTAGCTGTGGCAGGACCAGACTACTGTATTGTAGCTGCTGATACGCGGT
TGAGCTCAGACTATCGAATCCGCACGCGTAACGTCAGCCGATTAATCGAA
ATTTCTCCTTGCACATTTGTGGGAATGGCTGGAAGCTGGGCGGACGTGAC
TACACTACGGCATGAGTTGGCCTATGACTTGAGCTGCTTCGAGGCAAAGC
ACGGGGGTGCCATCGGTACTGCGGCCCTCGCCACCTTTCTGTCCAACCGT
CTCTACATGCACCGGCTACAGCCCGTTTACGCTCTGAACCTGGTGGCCGG
TTTGAACGCATTAGGCCAGGGGGCTGTCTACAGCTACGACGTGATCGGCT
CCTTCAATCGAGTGCCGGCAGCATGCTGCGGTAGAGGCCAGGAGCTGATA
CAGCCGGTTTTAGATCAATTTATGGCACAAGACGGTAACAAATTGAACAG
TAATAACGCACCCTTGTCTTGCGAAGAAGCCTTTCAGGTGGTCAAAAATG
CATTTTTGTCCGGAGCCGAAAGAGAAATTAGCATTGGAGATGGTGTACAT
ATTGTGATAATGCAAAAAGGAAAGTTGGAGCCTAGAATGGAGAGCTTCGC
TTTGCCTCGGCACTAG
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protein sequence of rna8043

>rna8043-protein ID=rna8043-protein|Name=rna8043|organism=Nannochloropsis gaditana|type=polypeptide|length=214bp
MQRQELRAFLLCGAVLTSLTVMSFSFSLFSLASRNALSLLSNRSSRWRYG
RVLPSGQASSLPDARQFRVAPYCEMPRNGFEIPHDRLDFSYSRSSGPGGQ
NVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEH
RTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRS
EKKASRRRNGKWDE
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mRNA from alignment at KK037247.1:424583..425227+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8043 ID=rna8043|Name=rna8043|organism=Nannochloropsis gaditana|type=mRNA|length=645bp|location=Sequence derived from alignment at KK037247.1:424583..425227+ (Nannochloropsis gaditana)
ATGCAACGACAGGAACTGCGGGCATTCCTCTTGTGTGGCGCCGTATTGAC
CAGTCTCACTGTTatgtccttttctttcagTCTATTTTCGTTGGCCAGTC
GTAacgcgctctccctcttaTCGAATCGGAGCAGTAGATGGCGCTACGGG
CGAGTGCTTCCATCCGgacaagcctcctccctacccgaTGCTCGTCAGTT
CCGAGTTGCGCCTTATTGCGAAATGCCTCGCAATGGGTTTGAGATTCCAC
ACGACCGTCTCGATTTCAGTTATTCTAGAAGTTCAGGCCCGGGAGGACAG
AATGTGAACAAACTGAATACCCGCGTGGAGTTGCGCTTTCACGTTGAGGA
CGCTGACTGGATCCCAGAGGACATGCGCCACCGGTTTCTTGAGCAGCAGC
GACACCGCGTGAACAAGCTGGGGGAGTTCGTCTTATCGTCTCAGGAGCAT
CGTACTCAGCTGAAGAACCGCGAAGAATGTGTGAGAAAGTTGGAGGAAGC
GTTGACGAGGGCAGCTGTGGTGCCGAAAAGGCGCAACATGCGCACAGGCT
TGAcggagtgggagaaggagaacaGACTgcgggagaaaaagaaacggTCC
GAAAAGAAAGCGTCGCGCCGACGCAATGGTAAATGGGACGAGTAG
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Coding sequence (CDS) from alignment at KK037247.1:424583..425227+

>rna8043 ID=rna8043|Name=rna8043|organism=Nannochloropsis gaditana|type=CDS|length=645bp|location=Sequence derived from alignment at KK037247.1:424583..425227+ (Nannochloropsis gaditana)
ATGCAACGACAGGAACTGCGGGCATTCCTCTTGTGTGGCGCCGTATTGAC
CAGTCTCACTGTTatgtccttttctttcagTCTATTTTCGTTGGCCAGTC
GTAacgcgctctccctcttaTCGAATCGGAGCAGTAGATGGCGCTACGGG
CGAGTGCTTCCATCCGgacaagcctcctccctacccgaTGCTCGTCAGTT
CCGAGTTGCGCCTTATTGCGAAATGCCTCGCAATGGGTTTGAGATTCCAC
ACGACCGTCTCGATTTCAGTTATTCTAGAAGTTCAGGCCCGGGAGGACAG
AATGTGAACAAACTGAATACCCGCGTGGAGTTGCGCTTTCACGTTGAGGA
CGCTGACTGGATCCCAGAGGACATGCGCCACCGGTTTCTTGAGCAGCAGC
GACACCGCGTGAACAAGCTGGGGGAGTTCGTCTTATCGTCTCAGGAGCAT
CGTACTCAGCTGAAGAACCGCGAAGAATGTGTGAGAAAGTTGGAGGAAGC
GTTGACGAGGGCAGCTGTGGTGCCGAAAAGGCGCAACATGCGCACAGGCT
TGAcggagtgggagaaggagaacaGACTgcgggagaaaaagaaacggTCC
GAAAAGAAAGCGTCGCGCCGACGCAATGGTAAATGGGACGAGTAG
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Synonyms
Publications