EWM22640.1, cds8021 (CDS) Nannochloropsis gaditana

Overview
NameEWM22640.1
Unique Namecds8021
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:424583..425227 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22640.1
Productpeptidyl-trna hydrolase mitochondrial-like protein
Orig transcript idgnl|cribi|Naga_100023g31.3956.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:424583..425227 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008135translation factor activity, RNA binding
GO:0003747translation release factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006415translational termination
Vocabulary: INTERPRO
TermDefinition
IPR000352Pep_chain_release_fac_I_II
Homology
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|585103205|gb|EWM22640.1| (peptidyl-trna hydrolase mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 438.343 bits (1126), Expect = 1.089e-155
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
Query:    1 MQRQELRAFLLCGAVLTSLTVMSFSFSLFSLASRNALSLLSNRSSRWRYGRVLPSGQASSLPDARQFRVAPYCEMPRNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKKASRRRNGKWDE 214
            MQRQELRAFLLCGAVLTSLTVMSFSFSLFSLASRNALSLLSNRSSRWRYGRVLPSGQASSLPDARQFRVAPYCEMPRNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKKASRRRNGKWDE
Sbjct:    1 MQRQELRAFLLCGAVLTSLTVMSFSFSLFSLASRNALSLLSNRSSRWRYGRVLPSGQASSLPDARQFRVAPYCEMPRNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKKASRRRNGKWDE 214          
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|973135029|ref|XP_015211436.1| (PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial isoform X1 [Lepisosteus oculatus])

HSP 1 Score: 131.724 bits (330), Expect = 1.055e-34
Identity = 68/169 (40.24%), Postives = 108/169 (63.91%), Query Frame = 0
Query:   44 SSRWRYGRVLPSGQASSLPDARQFRVAPYCEMPRNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKR-----RNMRTGLTEWEKENRLREKKKRSEKKASRR 207
            SS + YGR        S  D  + R    C + +N  +IP DRL  +YSRSSGPGGQ+VNK+NT+ E+RFHV+ ADWIPED+R + + + ++R+NK GE +++S+  R Q++N  +C++K+ + +  A++ PK      + +R    E  +++RL++KK  S+ K SRR
Sbjct:   48 SSCFDYGR--------SAADYSRVRHIKDCSL-QNSTDIPLDRLTVTYSRSSGPGGQHVNKVNTKAEIRFHVQTADWIPEDVRQKIILKNKNRINKSGELIVTSEASRYQMRNLADCLQKIGDIIAEASLKPKEPSEEDKALRKTRLEKMQQDRLKQKKMHSDLKQSRR 207          
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|973135031|ref|XP_015211437.1| (PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial isoform X2 [Lepisosteus oculatus])

HSP 1 Score: 129.413 bits (324), Expect = 6.267e-34
Identity = 59/136 (43.38%), Postives = 96/136 (70.59%), Query Frame = 0
Query:   77 RNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKR-----RNMRTGLTEWEKENRLREKKKRSEKKASRR 207
            +N  +IP DRL  +YSRSSGPGGQ+VNK+NT+ E+RFHV+ ADWIPED+R + + + ++R+NK GE +++S+  R Q++N  +C++K+ + +  A++ PK      + +R    E  +++RL++KK  S+ K SRR
Sbjct:   67 QNSTDIPLDRLTVTYSRSSGPGGQHVNKVNTKAEIRFHVQTADWIPEDVRQKIILKNKNRINKSGELIVTSEASRYQMRNLADCLQKIGDIIAEASLKPKEPSEEDKALRKTRLEKMQQDRLKQKKMHSDLKQSRR 202          
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|224001482|ref|XP_002290413.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973835|gb|EED92165.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 127.102 bits (318), Expect = 6.802e-34
Identity = 63/128 (49.22%), Postives = 90/128 (70.31%), Query Frame = 0
Query:   80 FEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKKASRR 207
              IP D++  S++RSSG GGQNVNK+ T+VELRFH++ A WIP ++R R    + +R+N  G   ++SQE+RTQ++NR++ ++KLE+ L  +   PK R MR GL+   KENR   KKK S+KKA+RR
Sbjct:    1 ITIPEDQIQTSFARSSGAGGQNVNKVETKVELRFHLDSASWIPAEVRERLKTNEANRINNDGFMSVNSQEYRTQVQNRKDALKKLEDILRNSWARPKVRKMRKGLSAKTKENRREMKKKISQKKANRR 128          
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|1041097746|ref|XP_017271615.1| (PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial isoform X4 [Kryptolebias marmoratus])

HSP 1 Score: 125.176 bits (313), Expect = 2.007e-32
Identity = 65/139 (46.76%), Postives = 89/139 (64.03%), Query Frame = 0
Query:   80 FEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRN-----MRTGLTEWEKENRLREKKKRSEKKASRRRNGKWD 213
              IP DRL  SYSRSSGPGGQ+VNK+NT+ E+RFH+  ADWIPED+R + LE+ R+R+NK GE +++S+  R Q +N  +CVRK+   +  A+V  +        +R    E   + RLR+KK  S  K SRR  G +D
Sbjct:   53 VHIPVDRLSVSYSRSSGPGGQHVNKVNTKAEVRFHLHTADWIPEDVRQKILEKNRNRINKAGELLVTSEMSRRQQRNLSDCVRKIAAIIAEASVKHREATAEDIALRAARLEKRNKERLRQKKISSTIKQSRR--GDFD 189          
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|1191071099|ref|XP_020914234.1| (peptidyl-tRNA hydrolase ICT1, mitochondrial-like [Exaiptasia pallida] >gi|999983593|gb|KXJ22734.1| Peptidyl-tRNA hydrolase ICT1, mitochondrial [Exaiptasia pallida])

HSP 1 Score: 124.405 bits (311), Expect = 3.827e-32
Identity = 62/131 (47.33%), Postives = 91/131 (69.47%), Query Frame = 0
Query:   82 IPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVP-----KRRNMRTGLTEWEKENRLREKKKRSEKKASRR 207
            +P DRL   ++RSSGPGGQNVNK+NT+VE+RFHVE ADWIPE++R + L+++R+RVNK GE VL+S + R+QLKN ++ + +L+  +  A+ VP     ++++    L     E RL  KK  S+KK  R+
Sbjct:   54 VPQDRLTIKFARSSGPGGQNVNKVNTKVEIRFHVESADWIPEEVREKLLKRERNRVNKNGELVLTSTQFRSQLKNVKDAISRLQTIIKDASFVPAGPSQQQQDHIKILARNFNERRLATKKFASQKKXGRK 184          
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|1210516196|dbj|GAX25012.1| (peptidyl-tRNA hydrolase ICT1 [Fistulifera solaris])

HSP 1 Score: 125.176 bits (313), Expect = 4.989e-32
Identity = 59/129 (45.74%), Postives = 92/129 (71.32%), Query Frame = 0
Query:   80 FEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKKASRRR 208
             +IP + LDFS+ RSSG GGQNVNK+N++V+LR +V +A WIP ++R R ++QQ +R++K G   +++QEHRTQ+ NR+  ++KL + L +A   PK R +R G++   KE R   K++RS+ KA R++
Sbjct:   97 IDIPEENLDFSFVRSSGAGGQNVNKVNSQVQLRLNVNEAYWIPYEVRQRLMQQQANRISKEGVLTIAAQEHRTQVANRKAAIQKLRDMLLQAWPRPKERRIRQGISIKTKEQRKEFKRRRSDVKAGRKK 225          
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|928015417|ref|XP_013881348.1| (PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Austrofundulus limnaeus])

HSP 1 Score: 124.02 bits (310), Expect = 5.777e-32
Identity = 74/193 (38.34%), Postives = 107/193 (55.44%), Query Frame = 0
Query:   21 VMSFSFSLFSLASRNALSLLSNRSSRWRYGRVLPSGQ-ASSLPDARQFRVAPYCEMPRNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRN-----MRTGLTEWEKENRLREKKKRSEKKASRR 207
            +   SF L S A +N +SL  +RS   R      S +     P A      P          IP DRL  SYSRSSGPGGQ+VNK NT+ E+RFH+  ADWIPED+R + LE+ ++R+ K GE +++S+  R+Q +N  +C++K+   +  A+  P++ +     +R    E   + RLR+KK  S  K SRR
Sbjct:    5 IARCSFLLLSCAEKNIVSL--HRSVVRRLSDSTSSSKPCCGTPGADDAEDTP--------VHIPLDRLTVSYSRSSGPGGQHVNKTNTKAEVRFHLHTADWIPEDVRQKVLEKNKNRITKAGELLVTSEVSRSQQRNLSDCIQKISAMIAEASEKPRQASAEDIALRAARLEKRNKERLRQKKIHSAIKHSRR 187          
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|1188106002|ref|XP_020774911.1| (peptidyl-tRNA hydrolase ICT1, mitochondrial [Boleophthalmus pectinirostris])

HSP 1 Score: 122.479 bits (306), Expect = 6.174e-32
Identity = 60/135 (44.44%), Postives = 89/135 (65.93%), Query Frame = 0
Query:   78 NGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRN-----MRTGLTEWEKENRLREKKKRSEKKASRR 207
            +   IP +RL  SYSRSSGPGGQ+VNK+NT+ E+RFHV+ ADWIPED+R + LE+ ++R+NK GE +++S+  R+Q +N  +C++K+ + +T A   P         +R    E   + RL++KK  S  K SRR
Sbjct:    7 SSVHIPVERLTVSYSRSSGPGGQHVNKVNTKAEVRFHVQTADWIPEDVRQKILEKNKNRINKSGELLVTSEVSRSQHRNLSDCIQKISDIITEATEKPYEPTAEDIALRAARLEKRNKERLKQKKMASNIKQSRR 141          
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|620984711|ref|XP_001516100.2| (PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial, partial [Ornithorhynchus anatinus])

HSP 1 Score: 122.094 bits (305), Expect = 8.430e-32
Identity = 62/132 (46.97%), Postives = 91/132 (68.94%), Query Frame = 0
Query:   81 EIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTE---WEKEN--RLREKKKRSEKKASRR 207
            +IP DRL  +YSRSSGPGGQNVNK+N++ E+RFH+  ADWI E +R +   +QR+R+NKLGE +++S+  R QL+N  EC++K+ + +++A+  P+  +  T        EK N  RLR+KK  +  KASRR
Sbjct:   17 DIPLDRLTITYSRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPLRQKIAIEQRNRINKLGELIVNSESSRYQLRNLAECLQKIRDIISQASQEPRAPSKETKEQHRLRVEKANRERLRQKKITATIKASRR 148          
The following BLAST results are available for this feature:
BLAST of EWM22640.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103205|gb|EWM22640.1|1.089e-155100.00peptidyl-trna hydrolase mitochondrial-like protein... [more]
gi|973135029|ref|XP_015211436.1|1.055e-3440.24PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochond... [more]
gi|973135031|ref|XP_015211437.1|6.267e-3443.38PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochond... [more]
gi|224001482|ref|XP_002290413.1|6.802e-3449.22predicted protein, partial [Thalassiosira pseudona... [more]
gi|1041097746|ref|XP_017271615.1|2.007e-3246.76PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochond... [more]
gi|1191071099|ref|XP_020914234.1|3.827e-3247.33peptidyl-tRNA hydrolase ICT1, mitochondrial-like [... [more]
gi|1210516196|dbj|GAX25012.1|4.989e-3245.74peptidyl-tRNA hydrolase ICT1 [Fistulifera solaris][more]
gi|928015417|ref|XP_013881348.1|5.777e-3238.34PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochond... [more]
gi|1188106002|ref|XP_020774911.1|6.174e-3244.44peptidyl-tRNA hydrolase ICT1, mitochondrial [Boleo... [more]
gi|620984711|ref|XP_001516100.2|8.430e-3246.97PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochond... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8043rna8043Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications