EWM22640.1, cds8021 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|585103205|gb|EWM22640.1| (peptidyl-trna hydrolase mitochondrial-like protein [Nannochloropsis gaditana]) HSP 1 Score: 438.343 bits (1126), Expect = 1.089e-155 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
Query: 1 MQRQELRAFLLCGAVLTSLTVMSFSFSLFSLASRNALSLLSNRSSRWRYGRVLPSGQASSLPDARQFRVAPYCEMPRNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKKASRRRNGKWDE 214
MQRQELRAFLLCGAVLTSLTVMSFSFSLFSLASRNALSLLSNRSSRWRYGRVLPSGQASSLPDARQFRVAPYCEMPRNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKKASRRRNGKWDE
Sbjct: 1 MQRQELRAFLLCGAVLTSLTVMSFSFSLFSLASRNALSLLSNRSSRWRYGRVLPSGQASSLPDARQFRVAPYCEMPRNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKKASRRRNGKWDE 214
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|973135029|ref|XP_015211436.1| (PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial isoform X1 [Lepisosteus oculatus]) HSP 1 Score: 131.724 bits (330), Expect = 1.055e-34 Identity = 68/169 (40.24%), Postives = 108/169 (63.91%), Query Frame = 0
Query: 44 SSRWRYGRVLPSGQASSLPDARQFRVAPYCEMPRNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKR-----RNMRTGLTEWEKENRLREKKKRSEKKASRR 207
SS + YGR S D + R C + +N +IP DRL +YSRSSGPGGQ+VNK+NT+ E+RFHV+ ADWIPED+R + + + ++R+NK GE +++S+ R Q++N +C++K+ + + A++ PK + +R E +++RL++KK S+ K SRR
Sbjct: 48 SSCFDYGR--------SAADYSRVRHIKDCSL-QNSTDIPLDRLTVTYSRSSGPGGQHVNKVNTKAEIRFHVQTADWIPEDVRQKIILKNKNRINKSGELIVTSEASRYQMRNLADCLQKIGDIIAEASLKPKEPSEEDKALRKTRLEKMQQDRLKQKKMHSDLKQSRR 207
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|973135031|ref|XP_015211437.1| (PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial isoform X2 [Lepisosteus oculatus]) HSP 1 Score: 129.413 bits (324), Expect = 6.267e-34 Identity = 59/136 (43.38%), Postives = 96/136 (70.59%), Query Frame = 0
Query: 77 RNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKR-----RNMRTGLTEWEKENRLREKKKRSEKKASRR 207
+N +IP DRL +YSRSSGPGGQ+VNK+NT+ E+RFHV+ ADWIPED+R + + + ++R+NK GE +++S+ R Q++N +C++K+ + + A++ PK + +R E +++RL++KK S+ K SRR
Sbjct: 67 QNSTDIPLDRLTVTYSRSSGPGGQHVNKVNTKAEIRFHVQTADWIPEDVRQKIILKNKNRINKSGELIVTSEASRYQMRNLADCLQKIGDIIAEASLKPKEPSEEDKALRKTRLEKMQQDRLKQKKMHSDLKQSRR 202
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|224001482|ref|XP_002290413.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973835|gb|EED92165.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 127.102 bits (318), Expect = 6.802e-34 Identity = 63/128 (49.22%), Postives = 90/128 (70.31%), Query Frame = 0
Query: 80 FEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKKASRR 207
IP D++ S++RSSG GGQNVNK+ T+VELRFH++ A WIP ++R R + +R+N G ++SQE+RTQ++NR++ ++KLE+ L + PK R MR GL+ KENR KKK S+KKA+RR
Sbjct: 1 ITIPEDQIQTSFARSSGAGGQNVNKVETKVELRFHLDSASWIPAEVRERLKTNEANRINNDGFMSVNSQEYRTQVQNRKDALKKLEDILRNSWARPKVRKMRKGLSAKTKENRREMKKKISQKKANRR 128
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|1041097746|ref|XP_017271615.1| (PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial isoform X4 [Kryptolebias marmoratus]) HSP 1 Score: 125.176 bits (313), Expect = 2.007e-32 Identity = 65/139 (46.76%), Postives = 89/139 (64.03%), Query Frame = 0
Query: 80 FEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRN-----MRTGLTEWEKENRLREKKKRSEKKASRRRNGKWD 213
IP DRL SYSRSSGPGGQ+VNK+NT+ E+RFH+ ADWIPED+R + LE+ R+R+NK GE +++S+ R Q +N +CVRK+ + A+V + +R E + RLR+KK S K SRR G +D
Sbjct: 53 VHIPVDRLSVSYSRSSGPGGQHVNKVNTKAEVRFHLHTADWIPEDVRQKILEKNRNRINKAGELLVTSEMSRRQQRNLSDCVRKIAAIIAEASVKHREATAEDIALRAARLEKRNKERLRQKKISSTIKQSRR--GDFD 189
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|1191071099|ref|XP_020914234.1| (peptidyl-tRNA hydrolase ICT1, mitochondrial-like [Exaiptasia pallida] >gi|999983593|gb|KXJ22734.1| Peptidyl-tRNA hydrolase ICT1, mitochondrial [Exaiptasia pallida]) HSP 1 Score: 124.405 bits (311), Expect = 3.827e-32 Identity = 62/131 (47.33%), Postives = 91/131 (69.47%), Query Frame = 0
Query: 82 IPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVP-----KRRNMRTGLTEWEKENRLREKKKRSEKKASRR 207
+P DRL ++RSSGPGGQNVNK+NT+VE+RFHVE ADWIPE++R + L+++R+RVNK GE VL+S + R+QLKN ++ + +L+ + A+ VP ++++ L E RL KK S+KK R+
Sbjct: 54 VPQDRLTIKFARSSGPGGQNVNKVNTKVEIRFHVESADWIPEEVREKLLKRERNRVNKNGELVLTSTQFRSQLKNVKDAISRLQTIIKDASFVPAGPSQQQQDHIKILARNFNERRLATKKFASQKKXGRK 184
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|1210516196|dbj|GAX25012.1| (peptidyl-tRNA hydrolase ICT1 [Fistulifera solaris]) HSP 1 Score: 125.176 bits (313), Expect = 4.989e-32 Identity = 59/129 (45.74%), Postives = 92/129 (71.32%), Query Frame = 0
Query: 80 FEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKKASRRR 208
+IP + LDFS+ RSSG GGQNVNK+N++V+LR +V +A WIP ++R R ++QQ +R++K G +++QEHRTQ+ NR+ ++KL + L +A PK R +R G++ KE R K++RS+ KA R++
Sbjct: 97 IDIPEENLDFSFVRSSGAGGQNVNKVNSQVQLRLNVNEAYWIPYEVRQRLMQQQANRISKEGVLTIAAQEHRTQVANRKAAIQKLRDMLLQAWPRPKERRIRQGISIKTKEQRKEFKRRRSDVKAGRKK 225
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|928015417|ref|XP_013881348.1| (PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Austrofundulus limnaeus]) HSP 1 Score: 124.02 bits (310), Expect = 5.777e-32 Identity = 74/193 (38.34%), Postives = 107/193 (55.44%), Query Frame = 0
Query: 21 VMSFSFSLFSLASRNALSLLSNRSSRWRYGRVLPSGQ-ASSLPDARQFRVAPYCEMPRNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRN-----MRTGLTEWEKENRLREKKKRSEKKASRR 207
+ SF L S A +N +SL +RS R S + P A P IP DRL SYSRSSGPGGQ+VNK NT+ E+RFH+ ADWIPED+R + LE+ ++R+ K GE +++S+ R+Q +N +C++K+ + A+ P++ + +R E + RLR+KK S K SRR
Sbjct: 5 IARCSFLLLSCAEKNIVSL--HRSVVRRLSDSTSSSKPCCGTPGADDAEDTP--------VHIPLDRLTVSYSRSSGPGGQHVNKTNTKAEVRFHLHTADWIPEDVRQKVLEKNKNRITKAGELLVTSEVSRSQQRNLSDCIQKISAMIAEASEKPRQASAEDIALRAARLEKRNKERLRQKKIHSAIKHSRR 187
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|1188106002|ref|XP_020774911.1| (peptidyl-tRNA hydrolase ICT1, mitochondrial [Boleophthalmus pectinirostris]) HSP 1 Score: 122.479 bits (306), Expect = 6.174e-32 Identity = 60/135 (44.44%), Postives = 89/135 (65.93%), Query Frame = 0
Query: 78 NGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRN-----MRTGLTEWEKENRLREKKKRSEKKASRR 207
+ IP +RL SYSRSSGPGGQ+VNK+NT+ E+RFHV+ ADWIPED+R + LE+ ++R+NK GE +++S+ R+Q +N +C++K+ + +T A P +R E + RL++KK S K SRR
Sbjct: 7 SSVHIPVERLTVSYSRSSGPGGQHVNKVNTKAEVRFHVQTADWIPEDVRQKILEKNKNRINKSGELLVTSEVSRSQHRNLSDCIQKISDIITEATEKPYEPTAEDIALRAARLEKRNKERLKQKKMASNIKQSRR 141
BLAST of EWM22640.1 vs. NCBI_GenBank
Match: gi|620984711|ref|XP_001516100.2| (PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial, partial [Ornithorhynchus anatinus]) HSP 1 Score: 122.094 bits (305), Expect = 8.430e-32 Identity = 62/132 (46.97%), Postives = 91/132 (68.94%), Query Frame = 0
Query: 81 EIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTE---WEKEN--RLREKKKRSEKKASRR 207
+IP DRL +YSRSSGPGGQNVNK+N++ E+RFH+ ADWI E +R + +QR+R+NKLGE +++S+ R QL+N EC++K+ + +++A+ P+ + T EK N RLR+KK + KASRR
Sbjct: 17 DIPLDRLTITYSRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPLRQKIAIEQRNRINKLGELIVNSESSRYQLRNLAECLQKIRDIISQASQEPRAPSKETKEQHRLRVEKANRERLRQKKITATIKASRR 148 The following BLAST results are available for this feature:
BLAST of EWM22640.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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