rna8017, rna8017 (mRNA) Nannochloropsis gaditana

Overview
Namerna8017
Unique Namerna8017
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1887
Alignment locationKK037247.1:358223..359648 -

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Properties
Property NameValue
ProductDNA methylase, N-6 adenine-specific, conserved site
Orig transcript idgnl|cribi|Naga_100023g2.3967.mrna
Orig protein idgnl|cribi|Naga_100023g2.3967
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:358223..359648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100023g2gene7763Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22651.1cds7995Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8017rna8017-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8017 ID=rna8017|Name=rna8017|organism=Nannochloropsis gaditana|type=mRNA|length=1887bp
AAGGCATCTGAAGCCAGAAATTAATTAGAGCAGCCTCTGAGTTTTAGTTT
TGAGCCATAGAATCTAGGCATCAAAAAGGATTCACCTCCCTCACGAGCCA
GCAGGCCCTTGCGTCTGAGCAGAAGACATCCTTCGCCAGGTAGGAGGTTA
GATGTTCACTATCTGAGGTTGCAAGGTGACAAACGCGACTACGTTTGCTG
GCGAGCTTGTGATATATCTCGTGTCGCAAATGACAAGCATGTCAAGAGGA
CTTTGTACGGCAAGATAAAAGATTTTGAATGAACACATGATTATAACATT
ATTTTGACTGTTGATACACACTTCTCGGTGCCCCAACAGGATGGTTCTCT
TCGTATGCCTTCCTCTGACCAAGTTTTCAAAGTTTTGAAGAACAAATGTG
CCTCATTACCTCTTGAATGGCATATGGTTAAATCTTAGATTCAAATAGAT
GTGCCCTTCTTCTTTTGCGTCAATTGCTTCGTAGAGCCAGAAGAAACAAG
CACCAAAGCTGTCGCGATGGGCGTTTCCGTCTTTCTGAGCTTTATCTCCG
TATCCCCCCTCACATCTCAGGTGTATTTATCATGAGCACGATACTAGATG
GTCAATGTGCATCGGGTTTAGAAGTGTTATGGGTGGCTATGCACGGTTTT
GTCTTCACCTTTGTCTTGCTGACGGCGGGGATGGATCTATTGAACGCTGC
TGCCATGACGGCTCTAGTTGCTGGCGGTGGCATGTACTTGGTGGTCCTTT
CGGAGATAGGAGCGCACAGTATGGTGTACGAATGGCTACCGCTCGTCGTT
ACCGTTGTCGCCGTAAGTCTCCTGTCGATGGGAGGTGCACGGTATGCCAA
GGGGCAGGTTTTCGCGCCGCCAAGCACCACCTCCGGGACAGGCCCTGTCC
TCTTTCTCTCCGTGTTAGGAGGCTATGTCCTGGCGACTTTCCAAACACAG
GCCCTGCGGGCATCGGGATTAGAGGATTGGATACCTCTCATGGCCATAGG
GGTCGTTTGCGCTTTGATGGCTTACGGGGGCGTGCGCTACGCCCGAAACG
AGGACTTCCTCCCCACGTCGCTAACAAGGGGCTCAGGGCCTCGGATCTCA
CTCATGGCCCTGGGTCTTTTTGTTGGAACCTCCTTTCTGAGGAAGCTGGA
GGGGTACAAAGGCACGTGGGGTAGCTGGCTGGCATTGGGGGGAGCAGCGG
CGGGCTCGGCGCTGCTGGCTTCCGGCGGTGCTCGCTACTCCCTAGGCGGA
AGCTTTCTGCCCGGGACAGTGGCCTCCGGACCTGCGCCCGTGGCAGTAAT
GGCGTTGCTGGGAGCACTCGTTTACACTGCTTTCGTGGAGCGCCTGAGTT
TGCGAGCTTCCGGACAGGGTGCGGAGCAGTGGTGGCCGCTGGCGGGCGTA
GTTTTGGGCGTGGGGGCCCTATCGCATGCCGGGGCCAGGATGGGGGCGGA
CAGTACGCTGCCGACGGGCCTTAAGCAGGGGTGGACCTCGCCCCTGGCCA
TGCTAGGCTTGGCTCTTTACTCGGCGCTGGCTCTGCACGCTGTGGAGGAT
GCCAAGGGCGGCCTGACAATGTGGTTGAATGTGGCGGGCGCTGCGTCCTT
GGCGGGGGGGGTGGCGCTCGTCGGGAAGAGAAAGCTGGCGCCAGTCTGAG
CTGCTAAGGTGGTCGGGATAACGTGTTGACTGTAGGTATGTGTAAGTCTG
AGCGGAGAAGAGGAGACGGTATTGCGTGTCCACTGTTTGTACTAGGGAGG
GAATTGAGGAGTCTGGGGAGACAATCGTGCTAGCGGAGTTACAGCACCAC
CCGGACACAGCAAGACGAGATGAGAGGCATAAAACATATTTTTTGAAAAA
AACAAGGTAACCTCTTTCCTGAGACATGGTACGCGAT
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protein sequence of rna8017

>rna8017-protein ID=rna8017-protein|Name=rna8017|organism=Nannochloropsis gaditana|type=polypeptide|length=371bp
MVEKQRRDRKRKRKRSSPLPSTQEAEWPRKNPKFDTPPTSGSTATPEGQA
YHEHGKFSSSSALPPASDAIAPSLIGKYHVARQQLGQASASKRRLSSPRL
PSLFQPSEPSINRKFKSTTSTLTARIQPKKTQASLPSYPFPTDYADHFES
PLRAYEDLEPFLQWLRRALRREKTSLHIYDPYFCRGAVVNLLKSLGFPRV
TNKMRDFYADVAAGTVPSYDVLVTNPPYSDDHKEKILRFCLGSDKPWCLL
LPNYVANKSYYLDAIRPLPQDRQPFYLVPHAKYEYQHPEGTGHISSPFFS
IWVCNPGPIPRRDIGCVVSRLQAAQQQHSLPWRLVLTVEDLRSTGAAPSW
KRPSNKRRKKMKRLMLTNVKG
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mRNA from alignment at KK037247.1:358223..359648-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8017 ID=rna8017|Name=rna8017|organism=Nannochloropsis gaditana|type=mRNA|length=1426bp|location=Sequence derived from alignment at KK037247.1:358223..359648- (Nannochloropsis gaditana)
GCACCTAGAAGGAAAGCATCAAATCGTACGACGTTGGCTTTGTGACGCTC
GTAAACAATCTTTTTCCATTGTCCCTATCTACAGGCTCATGGTAGAAAAG
CAACGGCGTGATCGAAAACGAAAGCGAAAACGCTCCTCTCCGTTGCCATC
GACTCAGGAGGCAGAGTGGCCCCGTAAAAACCCAAAATTCGATACTCCAC
CGACCAGCGGGAGCACCGCCACTCCTGAGGGGCAAGCCTACCATGAGCAT
GGAAAATTCTCCTCTTCTTCCGCCTTGCCTCCAGCGTCAGACGCCATCGC
ACCCTCTCTTATTGGCAAGTACCACGTCGCCAGGCAACAACTCGGCCAAG
CGTCTGCCTCAAAGCGGCGGCTCTCCTCTCCCCGGCTCCCTTCCCTCTTT
CAGCCTTCAGAGCCTTCAATAAATAGAAAATTCAAGTCGACGACTTCAAC
ATTGACTGCGAGAATTCAGCCAAAGAAGACCCAAGCCTCTCTTCCAAGCT
ATCCCTTTCCCACTGATTACGCCGACCATTTCGAAAGCCCGCTGCGAGCC
TACGAAGACCTGGAACCTTTTCTGCAGTGGCTCCGCCGAGCTCTACGTAG
GGAGAAGACCTCTCTCCATATTTACGACCCCTACTTTTGTCGGGGTGCGG
TAGTAAATCTGTTGAAGAGTCTAGGCTTCCCACGGGTTACCAACAAAATG
CGGGACTTCTACGCCGACGTCGCTGCCGGCACAGTGCCGAGCTACGACGT
CTTGGTCACCAACCCCCCCTACTCGGACGACCACAAAGAGAAAATCCTAC
GCTTTTGCCTTGGCTCTGATAAGCCATGGTGTCTCCTTCTCCCCAATTAC
GTGGCGAACAAGAGCTACTATCTGGACGCTATCAGGCCCCTCCCCCAGGA
TAGGCAGCCCTTCTACCTCGTCCCCCACGCCAAGTACGAGTACCAACACC
CCGAGGGTACGGGACATATATCGTCGCCCTTTTTTTCTATATGGGTTTGC
AATCCTGGACCAATACCTAGAAGAGACATTGGCTGCGTAGTCTCGCGCTT
GCAGGCGGCGCAGCAACAGCACTCCCTCCCCTGGCGGCTGGTCCTTACGG
TTGAGGATCTGCGGAGCACGGGAGCCGCACCTTCCTGGAAGCGGCCCAGC
AACAAGCGCCGGAAGAAGATGAAAAGGCTGATGCTGACAAATGTTAAGGG
ATAGTTCTTGCGTGGTAGGGGCGAGGGAATTGCGATAGACAGTATCATAG
ACGTCAGATGTCGACCGCCAACTCATTCGATTTTTTAAAATCGCGTACCA
TGTCTCAGGAAAGAGGTTACCTTGTTTTTTTCAAAAAATATGTTTTATGC
CTCTCATCTCGTCTTGCTGTGTCCGGGTGGTGCTGTAACTCCGCTAGCAC
GATTGTCTCCCCAGACTCCTCAATTC
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Coding sequence (CDS) from alignment at KK037247.1:358223..359648-

>rna8017 ID=rna8017|Name=rna8017|organism=Nannochloropsis gaditana|type=CDS|length=1116bp|location=Sequence derived from alignment at KK037247.1:358223..359648- (Nannochloropsis gaditana)
ATGGTAGAAAAGCAACGGCGTGATCGAAAACGAAAGCGAAAACGCTCCTC
TCCGTTGCCATCGACTCAGGAGGCAGAGTGGCCCCGTAAAAACCCAAAAT
TCGATACTCCACCGACCAGCGGGAGCACCGCCACTCCTGAGGGGCAAGCC
TACCATGAGCATGGAAAATTCTCCTCTTCTTCCGCCTTGCCTCCAGCGTC
AGACGCCATCGCACCCTCTCTTATTGGCAAGTACCACGTCGCCAGGCAAC
AACTCGGCCAAGCGTCTGCCTCAAAGCGGCGGCTCTCCTCTCCCCGGCTC
CCTTCCCTCTTTCAGCCTTCAGAGCCTTCAATAAATAGAAAATTCAAGTC
GACGACTTCAACATTGACTGCGAGAATTCAGCCAAAGAAGACCCAAGCCT
CTCTTCCAAGCTATCCCTTTCCCACTGATTACGCCGACCATTTCGAAAGC
CCGCTGCGAGCCTACGAAGACCTGGAACCTTTTCTGCAGTGGCTCCGCCG
AGCTCTACGTAGGGAGAAGACCTCTCTCCATATTTACGACCCCTACTTTT
GTCGGGGTGCGGTAGTAAATCTGTTGAAGAGTCTAGGCTTCCCACGGGTT
ACCAACAAAATGCGGGACTTCTACGCCGACGTCGCTGCCGGCACAGTGCC
GAGCTACGACGTCTTGGTCACCAACCCCCCCTACTCGGACGACCACAAAG
AGAAAATCCTACGCTTTTGCCTTGGCTCTGATAAGCCATGGTGTCTCCTT
CTCCCCAATTACGTGGCGAACAAGAGCTACTATCTGGACGCTATCAGGCC
CCTCCCCCAGGATAGGCAGCCCTTCTACCTCGTCCCCCACGCCAAGTACG
AGTACCAACACCCCGAGGGTACGGGACATATATCGTCGCCCTTTTTTTCT
ATATGGGTTTGCAATCCTGGACCAATACCTAGAAGAGACATTGGCTGCGT
AGTCTCGCGCTTGCAGGCGGCGCAGCAACAGCACTCCCTCCCCTGGCGGC
TGGTCCTTACGGTTGAGGATCTGCGGAGCACGGGAGCCGCACCTTCCTGG
AAGCGGCCCAGCAACAAGCGCCGGAAGAAGATGAAAAGGCTGATGCTGAC
AAATGTTAAGGGATAG
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Synonyms
Publications