rna7973, rna7973 (mRNA) Nannochloropsis gaditana

Overview
Namerna7973
Unique Namerna7973
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length871
Alignment locationKK037247.1:264537..265432 +

Link to JBrowse

Properties
Property NameValue
Productsuperoxide dismutase
Orig transcript idgnl|cribi|Naga_100653g3.10305.mrna
Orig protein idgnl|cribi|Naga_100653g3.10305
Genesod
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:264537..265432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
sodgene7720Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7973rna7973-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22723.1cds7951Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7973 ID=rna7973|Name=rna7973|organism=Nannochloropsis gaditana|type=mRNA|length=871bp
ATGCAAGTAGCACGGTCAAAGGAATATACGACCCAGATTCTTACCTCCGC
ACAACGCTCAATTGCAATCCTGCACCTAACAGTCCACCCGGCCAAAGCTT
TTCAGTTGGTCGTTCCTATGGCGTTTACGGCGCAGGAGTGGACGGAGGAA
TATGGCCGGGTGAAGACTTCTGCCATAGATCTACGCGCCTCGTTCGCAAC
CCCTTCGTCCTCTTCTTCCAATCCATCGACGCAACAATTGGCTAATCTAG
AGCAGAGCGTCGACAAGCTGGACTATCGATTGGGAACCATGGAGCAAAAT
CCTGGGCAATTCGGCATTTCCCAATCGGACGTGGTCCGTCGTCGAGAGCT
GGTCAAGGGGTTGCGTCATCAGCTGTCCCTCCTTGGCACCAGCAGCCACG
GCACCAACGGCCTGGTCACTGGGACTACTCGCGACGGCTCGGCGGCTTCG
GGTGGTGGAGGAGTACCCGGAGGCCTCCGCACCCTCGCACAGCAGCGTCG
AGAGATCATACACGAGCAAGACGAGCTCCTGGAGGACCTGGGGAAGGGCG
TGGACCGGCTGAAAATGCAGGGCCTGGTGATCCGGGACGAAACTGGGATC
CACCACAAGCTGCTGGAAGACATCGACGGGGACGTGGAGGCGGCGGCTTC
GTCTTTGCGCATGGAAGCTCGACATGCCCAGCGGATACGCGAGCAAAGCA
CGGTGTGTCGTTTGTACATTTGCATCGCTATTTTGCTGATCATCTTAGTC
CTGCTCTTGGTGATTGGCTTCACGTAGCTGAAAAGGGCAGGTTTGGGAAG
AACAACGAACGGGTTGCTTCAAGAGCAGACTTTGTAAAGAAAGAATGAAA
TTTCACAGATTCCTTTTGATT
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protein sequence of rna7973

>rna7973-protein ID=rna7973-protein|Name=rna7973|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGL
HIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRA
EFRVEVRGQGGEEGGRSGLVCGGDMW
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mRNA from alignment at KK037247.1:264537..265432+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7973 ID=rna7973|Name=rna7973|organism=Nannochloropsis gaditana|type=mRNA|length=896bp|location=Sequence derived from alignment at KK037247.1:264537..265432+ (Nannochloropsis gaditana)
TGTGTTCAAATCTGGACTCTGACCGTCGTAAGCCCTCCGGGACcctctcg
acctccccccttcctcccctctgccctgTTCTAAACCCGTACTTTCTTGC
TCACAAAGCCTCTCACTTATTTAATCGCGTGGTGCTAAACTTATGTCAAG
GTTTAACGATGGCCAGATGCGTGGCTCTCATCCGCGGTGCTCCTGGTGAC
ACAGAAACGTCCATCCAAGGGGTCATTCGCTTCGAGCAGGTACTTACGGT
TGGCAGAGGGCTGCTCGGGACTTTCACTAATTTTACCTATGTGTGGCGTC
GTATTTTCCCATTATGGTCACAGGCGTCAGAGACAGCACCCACAATCCTG
GACGGGGTCATCACGGGCCTAGCACCGGTATGTGGACGCATTGTTCAAGG
GTCCCGTGACAGGCGGCCCAGTCTCCTCAAGGTCTTCTCTCGTTCTACTA
TCATCACGCGCACAGGGACGACACGGTCTGCACATCCATACCTTTGGAGA
TTTTTCAGAGGGATTCGCTGGGGCAGGTGCGGGCCTTGGCTCTGTATGGT
CGTTCCCTCTTCTGGCGTGTTATCGTCTTGCAGGCTACGGCCTCCATGTG
CTCGCCGGAGCCGTTCCTCCCCGCGTGACACGCAGCATTCCTCCGGAATT
CTCCCAAGACTCCTTTTCTCACCACACCCTTTCCACATCAAACACAACCT
GCACACGGCAGGGGGCATTTTCAACCCGTTCGGGAAGGCCCACGGGGCCC
cggacgacgacgagcgGATGGCGGGCGACTTGGGCAACATCGAGGCcaac
ggggaaggaagggcggagttCCGTGTGGAGGtgaggggccagggagggga
ggaaggagggagaagcgggcTTGTTTGCGGGGGCGACATGTGGTAG
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Coding sequence (CDS) from alignment at KK037247.1:264537..265432+

>rna7973 ID=rna7973|Name=rna7973|organism=Nannochloropsis gaditana|type=CDS|length=1524bp|location=Sequence derived from alignment at KK037247.1:264537..265432+ (Nannochloropsis gaditana)
ATGGCCAGATGCGTGGCTCTCATCCGCGGTGCTCCTGGTGACACAGAAAC
GTCCATCCAAGGGGTCATTCGCTTCGAGCAGGCGTCAGAGACAGCACCCA
CAATCCTGGACGGGGTCATCACGGGCCTAGCACCGGGACGACACGGTCTG
CACATCCATACCTTTGGAGATTTTTCAGAGGGATTCGCTGGGGCAGGGGG
CATTTTCAACCCGTTCGGGAAGGCCCACGGGGCCCcggacgacgacgagc
gGATGGCGGGCGACTTGGGCAACATCGAGGCcaacggggaaggaagggcg
gagttCCGTGTGGAGGtgaggggccagggaggggaggaaggagggagaag
cgggcTTGTTTGCGGGGGCGACATGTGGTAGATGGCCAGATGCGTGGCTC
TCATCCGCGGTGCTCCTGGTGACACAGAAACGTCCATCCAAGGGGTCATT
CGCTTCGAGCAGGCGTCAGAGACAGCACCCACAATCCTGGACGGGGTCAT
CACGGGCCTAGCACCGGGACGACACGGTCTGCACATCCATACCTTTGGAG
ATTTTTCAGAGGGATTCGCTGGGGCAGGGGGCATTTTCAACCCGTTCGGG
AAGGCCCACGGGGCCCcggacgacgacgagcgGATGGCGGGCGACTTGGG
CAACATCGAGGCcaacggggaaggaagggcggagttCCGTGTGGAGGtga
ggggccagggaggggaggaaggagggagaagcgggcTTGTTTGCGGGGGC
GACATGTGGTAGATGGCCAGATGCGTGGCTCTCATCCGCGGTGCTCCTGG
TGACACAGAAACGTCCATCCAAGGGGTCATTCGCTTCGAGCAGGCGTCAG
AGACAGCACCCACAATCCTGGACGGGGTCATCACGGGCCTAGCACCGGGA
CGACACGGTCTGCACATCCATACCTTTGGAGATTTTTCAGAGGGATTCGC
TGGGGCAGGGGGCATTTTCAACCCGTTCGGGAAGGCCCACGGGGCCCcgg
acgacgacgagcgGATGGCGGGCGACTTGGGCAACATCGAGGCcaacggg
gaaggaagggcggagttCCGTGTGGAGGtgaggggccagggaggggagga
aggagggagaagcgggcTTGTTTGCGGGGGCGACATGTGGTAGATGGCCA
GATGCGTGGCTCTCATCCGCGGTGCTCCTGGTGACACAGAAACGTCCATC
CAAGGGGTCATTCGCTTCGAGCAGGCGTCAGAGACAGCACCCACAATCCT
GGACGGGGTCATCACGGGCCTAGCACCGGGACGACACGGTCTGCACATCC
ATACCTTTGGAGATTTTTCAGAGGGATTCGCTGGGGCAGGGGGCATTTTC
AACCCGTTCGGGAAGGCCCACGGGGCCCcggacgacgacgagcgGATGGC
GGGCGACTTGGGCAACATCGAGGCcaacggggaaggaagggcggagttCC
GTGTGGAGGtgaggggccagggaggggaggaaggagggagaagcgggcTT
GTTTGCGGGGGCGACATGTGGTAG
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Synonyms
Publications