EWM22723.1, cds7951 (CDS) Nannochloropsis gaditana

Overview
NameEWM22723.1
Unique Namecds7951
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:264695..264775 +
Alignment locationKK037247.1:264860..264913 +
Alignment locationKK037247.1:265002..265062 +
Alignment locationKK037247.1:265248..265432 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22723.1
Productsuperoxide dismutase
Orig transcript idgnl|cribi|Naga_100653g3.10305.mrna
Genesod
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:264695..264775 +
KK037247.1supercontigKK037247.1:264860..264913 +
KK037247.1supercontigKK037247.1:265002..265062 +
KK037247.1supercontigKK037247.1:265248..265432 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006950response to stress
GO:0042221response to chemical
GO:0008152metabolic process
GO:0006801superoxide metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR001424SOD_Cu_Zn_dom
Homology
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|585103306|gb|EWM22723.1| (superoxide dismutase [Nannochloropsis gaditana])

HSP 1 Score: 250.751 bits (639), Expect = 2.955e-84
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
Query:    1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRVEVRGQGGEEGGRSGLVCGGDMW 126
            MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRVEVRGQGGEEGGRSGLVCGGDMW
Sbjct:    1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRVEVRGQGGEEGGRSGLVCGGDMW 126          
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|553193825|ref|XP_005855837.1| (Cu/Zn superoxide dismutase [Nannochloropsis gaditana CCMP526] >gi|422293210|gb|EKU20510.1| Cu/Zn superoxide dismutase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 210.69 bits (535), Expect = 2.610e-68
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0
Query:    1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRVE 105
            MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEG+AEFRVE
Sbjct:    1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGKAEFRVE 105          
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|553193829|ref|XP_005855838.1| (Cu/Zn superoxide dismutase [Nannochloropsis gaditana CCMP526] >gi|422293211|gb|EKU20511.1| Cu/Zn superoxide dismutase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 208.764 bits (530), Expect = 1.542e-67
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0
Query:    1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRV 104
            MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEG+AEFRV
Sbjct:    1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGKAEFRV 104          
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|298710550|emb|CBJ25614.1| (disproportionate superoxide radical into hydrogen peroxide [Ectocarpus siliculosus])

HSP 1 Score: 111.694 bits (278), Expect = 7.290e-29
Identity = 52/92 (56.52%), Postives = 64/92 (69.57%), Query Frame = 0
Query:   16 ETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRVEVR 107
            E  + G +   QA E APTI+ G I G+ PGRHG+ +H FGDFSEG   AGGIFNPF K HGAPDD++RM GDLGNI+A+  G  +  +E R
Sbjct:   12 EEGLTGSLMLSQAQEEAPTIISGEIAGMRPGRHGIRVHVFGDFSEGLVSAGGIFNPFSKNHGAPDDEDRMVGDLGNIDADDAGVCKVHLEDR 103          
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|1183379263|gb|ORY04744.1| (copper/zinc superoxide dismutase [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 109.768 bits (273), Expect = 3.526e-28
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 0
Query:    1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRV 104
            M + VA++RG     ++S+QG + F Q SE +P  ++  +TGLAPG+HG HIH FGD + G   AG  FNPFGK HGAPD + R AGDLGN+ A+ +G+A   V
Sbjct:    1 MVKAVAVLRG-----DSSVQGTVYFTQESENSPVKVEATLTGLAPGKHGFHIHEFGDNTNGCTSAGAHFNPFGKTHGAPDAEVRHAGDLGNVVASEDGQATLSV 99          
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|1043299373|gb|OBZ84477.1| (Superoxide dismutase [Cu-Zn] [Choanephora cucurbitarum])

HSP 1 Score: 108.997 bits (271), Expect = 6.407e-28
Identity = 53/105 (50.48%), Postives = 67/105 (63.81%), Query Frame = 0
Query:    1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRVE 105
            M   +A+++GA       I GV++F QASE AP ++D   TGL PG+HG HIH FGD + G   AG  +NP GK HGAP+ + R AGDLGNI AN  G A  +VE
Sbjct:    1 MVNAIAVLKGA------DISGVVKFSQASEDAPVVVDASFTGLKPGKHGFHIHEFGDNTNGCISAGPHYNPHGKTHGAPEAEVRHAGDLGNITANASGEATLKVE 99          
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|671695284|emb|CDS10004.1| (hypothetical protein LRAMOSA02681 [Lichtheimia ramosa])

HSP 1 Score: 108.227 bits (269), Expect = 1.321e-27
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 0
Query:    1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRV 104
            M + VA+IRG     ++ + G + F Q SE APT ++  +TGL  G+HG H+H FGD + G   AG  FNPFGK HGAP+D+ER  GDLGNI A+ +G+   +V
Sbjct:    1 MVKAVAVIRG-----DSPVTGTVTFTQESENAPTTVEATVTGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPFGKTHGAPEDEERHVGDLGNIVASSDGKGTLKV 99          
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|1069956733|ref|XP_018289243.1| (hypothetical protein PHYBLDRAFT_31745 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026586621|gb|OAD71203.1| hypothetical protein PHYBLDRAFT_31745 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 105.531 bits (262), Expect = 1.559e-26
Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 0
Query:    1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRV 104
            M + VA+IRG     ++ ++G + F Q SE  PT ++  ++GL  G+HG H+H FGD + G   AG  FNP+GK HGAP+D+ER  GDLGNI A  +G A F++
Sbjct:    1 MVKAVAVIRG-----DSPVKGTVTFTQESENGPTTVEASVSGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPYGKTHGAPEDEERHVGDLGNIHAGKDGLATFKI 99          
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|541041650|gb|ERG80881.1| (superoxide dismutase [Ascaris suum])

HSP 1 Score: 106.301 bits (264), Expect = 2.587e-26
Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 0
Query:    2 ARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRV 104
            +R VA++RG     E  ++GV+   Q+ E  PTIL G I+GL PG HG H+H +GD + G   AG  FNPF K HG P D+ER  GDLGN+EA+  G A+F++
Sbjct:   34 SRAVAVLRG-----EGDVRGVVYLTQSKEDEPTILKGEISGLTPGLHGFHVHEYGDMTNGCISAGAHFNPFKKTHGGPTDEERHIGDLGNVEADANGIAKFQI 131          
BLAST of EWM22723.1 vs. NCBI_GenBank
Match: gi|1183479465|gb|ORZ03304.1| (superoxide dismutase Cu-Zn [Syncephalastrum racemosum])

HSP 1 Score: 104.76 bits (260), Expect = 3.264e-26
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 0
Query:    1 MARCVALIRGAPGDTETSIQGVIRFEQASETAPTILDGVITGLAPGRHGLHIHTFGDFSEGFAGAGGIFNPFGKAHGAPDDDERMAGDLGNIEANGEGRAEFRV 104
            M + VA++RG     ++ ++G + F Q SE  PT ++  ++GL PG+HG H+H FGD + G   AG  FNPFGK HGAP+D ER  GDLGN+ A  +G A  +V
Sbjct:    1 MVKAVAVVRG-----DSPVKGTVVFVQESENGPTTVEATLSGLTPGKHGFHVHEFGDNTNGCTSAGAHFNPFGKTHGAPEDAERHVGDLGNVVAGQDGNATLKV 99          
The following BLAST results are available for this feature:
BLAST of EWM22723.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103306|gb|EWM22723.1|2.955e-84100.00superoxide dismutase [Nannochloropsis gaditana][more]
gi|553193825|ref|XP_005855837.1|2.610e-6899.05Cu/Zn superoxide dismutase [Nannochloropsis gadita... [more]
gi|553193829|ref|XP_005855838.1|1.542e-6799.04Cu/Zn superoxide dismutase [Nannochloropsis gadita... [more]
gi|298710550|emb|CBJ25614.1|7.290e-2956.52disproportionate superoxide radical into hydrogen ... [more]
gi|1183379263|gb|ORY04744.1|3.526e-2850.00copper/zinc superoxide dismutase [Basidiobolus mer... [more]
gi|1043299373|gb|OBZ84477.1|6.407e-2850.48Superoxide dismutase [Cu-Zn] [Choanephora cucurbit... [more]
gi|671695284|emb|CDS10004.1|1.321e-2748.08hypothetical protein LRAMOSA02681 [Lichtheimia ram... [more]
gi|1069956733|ref|XP_018289243.1|1.559e-2646.15hypothetical protein PHYBLDRAFT_31745 [Phycomyces ... [more]
gi|541041650|gb|ERG80881.1|2.587e-2648.54superoxide dismutase [Ascaris suum][more]
gi|1183479465|gb|ORZ03304.1|3.264e-2646.15superoxide dismutase Cu-Zn [Syncephalastrum racemo... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7973rna7973Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications