EWM22728.1, cds7945 (CDS) Nannochloropsis gaditana

Overview
NameEWM22728.1
Unique Namecds7945
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:249282..249490 +
Alignment locationKK037247.1:249685..250231 +

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Properties
Property NameValue
End range.
End range250231
Protein idEWM22728.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100561g3.10218.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:249282..249490 +
KK037247.1supercontigKK037247.1:249685..250231 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR000270PB1_dom
Homology
[Close]
BLAST of EWM22728.1 vs. NCBI_GenBank
Match: gi|585103320|gb|EWM22728.1| (hypothetical protein Naga_100561g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 501.901 bits (1291), Expect = 1.496e-179
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0 
Query:    1 MFEIRLNKILSTKGYLDPGDGGKRKKFSKIKSNKLSLAMGCVRVKLTYEGRTFRRTVDPRSFTWAQFLAWGLVCFPSLAEPASLHLTYDDEDGDHPSLRGEEDWREALCACERLDRPLRVTMTREEGGEVGREGGGLGPESLLSEGEETVLVAAEGEVEEGREGPGEEGEGTTRGPGLTESQSTVPVFPALPPSPPDSAPPSFPTITTSFLRALQAQLAQGREGGREGEGGERTVQAEERQTPAQARMLAAL 252
            MFEIRLNKILSTKGYLDPGDGGKRKKFSKIKSNKLSLAMGCVRVKLTYEGRTFRRTVDPRSFTWAQFLAWGLVCFPSLAEPASLHLTYDDEDGDHPSLRGEEDWREALCACERLDRPLRVTMTREEGGEVGREGGGLGPESLLSEGEETVLVAAEGEVEEGREGPGEEGEGTTRGPGLTESQSTVPVFPALPPSPPDSAPPSFPTITTSFLRALQAQLAQGREGGREGEGGERTVQAEERQTPAQARMLAAL
Sbjct:    1 MFEIRLNKILSTKGYLDPGDGGKRKKFSKIKSNKLSLAMGCVRVKLTYEGRTFRRTVDPRSFTWAQFLAWGLVCFPSLAEPASLHLTYDDEDGDHPSLRGEEDWREALCACERLDRPLRVTMTREEGGEVGREGGGLGPESLLSEGEETVLVAAEGEVEEGREGPGEEGEGTTRGPGLTESQSTVPVFPALPPSPPDSAPPSFPTITTSFLRALQAQLAQGREGGREGEGGERTVQAEERQTPAQARMLAAL 252
[Close]
BLAST of EWM22728.1 vs. NCBI_GenBank
Match: gi|553178232|ref|XP_005852532.1| (hypothetical protein NGA_0682500, partial [Nannochloropsis gaditana CCMP526] >gi|422296001|gb|EKU23300.1| hypothetical protein NGA_0682500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 272.322 bits (695), Expect = 1.425e-90
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 
Query:    1 MFEIRLNKILSTKGYLDPGDGGKRKKFSKIKSNKLSLAMGCVRVKLTYEGRTFRRTVDPRSFTWAQFLAWGLVCFPSLAEPASLHLTYDDEDGDHPSLRGEEDWREALCACERLDRPLRVTMTREEGGE 129
            MFEIRLNKILSTKGYLDPGDGGKRKKFSKIKSNKLSLAMGCVRVKLTYEGRTFRRTVDPRSFTWAQFLAWGLVCFPSLAEPASLHLTYDDEDGDHPSLRGEEDWREALCACERLDRPLRVTMTREEGGE
Sbjct:    1 MFEIRLNKILSTKGYLDPGDGGKRKKFSKIKSNKLSLAMGCVRVKLTYEGRTFRRTVDPRSFTWAQFLAWGLVCFPSLAEPASLHLTYDDEDGDHPSLRGEEDWREALCACERLDRPLRVTMTREEGGE 129
The following BLAST results are available for this feature:
BLAST of EWM22728.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103320|gb|EWM22728.1|1.496e-179100.00hypothetical protein Naga_100561g3, partial [Nanno... [more]
gi|553178232|ref|XP_005852532.1|1.425e-90100.00hypothetical protein NGA_0682500, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7967rna7967Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications