rna7959, rna7959 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7959
Unique Name	rna7959
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1894
Alignment location	KK037247.1:226896..228633 +

Link to JBrowse

Properties


Property Name	Value
Product	rna methylase
Orig transcript id	gnl\|cribi\|Naga_100209g5.4957.mrna
Orig protein id	gnl\|cribi\|Naga_100209g5.4957
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:226896..228633 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100209g5	gene7709	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7959	rna7959-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22731.1	cds7937	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:226896..228633+
coding sequence from alignment at KK037247.1:226896..228633+

mRNA sequence

>rna7959 ID=rna7959|Name=rna7959|organism=Nannochloropsis gaditana|type=mRNA|length=1894bp
TCTAGAGCTTGAAGCGTGCTATGGTACGTCCACCCTCCCTTTCAGAACCC
AATGTGGAGGATAATGAGGCCCCCCTTTCGCATCCGCTGTCACCCGCTCA
AGCGTCACCGCCACCTCCTTCTGCGGCCGGTTCACCCTTGACAAATGACT
CTATGTTCACTCCCTCTGCGCTGCTCGCCAAAGCTTTGCTATGCGACGAC
GAAGATGATAATTGCAGCCAAGGCAATGTGTCCGCAGAAGAGAGGATGGA
GCGCGGAAAAAATAAGGGACGCCGTTCGAAGCAGCATCCGAAGCTGGGGG
GGCAGTCGTCTCTAGGCGGTTCCCCTTCGGCACAACCATCTCTTCAAACC
ATCCTACGCCAAGTTCAGCCACCTTCAACACGAACTGGTCAATTTCACAG
ACAACAGGAGGTGAAAATGCAAAGAATTCGAGGCGTATTGCTGGCCTCAC
TATCCATCAATTTGGTGTGCGGATTCATGTCCGCCACTATGACAGGCTAC
GTCACCATCGTCCTTGCGTGGGGTTTTTTTGCACGCCCAAGCCCTCCCCC
TTCTACCCCATCCCTGCTGGGCGCCAAGGATCATGAGACCAGCACCATAT
ATCTCAGCTGGATCGCTTTGTTTGCAGTAGCCCTCTTCTTGATCTACATT
GCCTGCTTTGGCATTCACTCCGCTCGAAAGGTTTCTATCAACCATCTCCT
TCGCTACTTCTGGGGGGCAGCCCTGGGCATTACGCCTCTCGTGCTGGTGA
CCACATTCGCGTTCGATTTTTACGATATATCCAGGAGCTTTATCCGTCAC
CATTGGGACGGAAAAGCGATGGAGGGCCTGCGACTTGTTTTTTGTAGTCA
AGGTGCCGAGGCAGGGGGAAAGTGCGCTGCTCCGGTGCTTGGCGGGCCCA
ATTTTTCAAGTATTCAGGATTGGTGTGAACACTACCATGCTGGAGCTGAT
GACTGCGAAGCCATCAAGCATGCTGCCCTGTCCCAAGCCGATAAATGGAT
CTATTTTATGCTTTTGAGCGCTGGGTTGCTCGGTGTCTTAAACCTGGTTT
CCCTTCTTGTATCCATGCATCTTTGCGTGCGATTGATAACCCCCAGTGTC
ATCATGACCTACGCCAACGATAACATCTCGTACCTCCTTCTTCTTCCCGC
GGGCTGCTGTCTTGGCATTTCACTCTTCCTTTTCTCTCACACCGGTTTTT
CGCCTGACCATACTTGGTTCGCGTGGAGCTTTCTCTGTGCAGCCGCGCTT
ACCCTCCTCAACTCAGTCCTCACGCTTGTGGGGGGAAGACTGAAAAAGAG
GAGACTCCTGCAAGCCTGTCTTGTCAGCAATGCTGTGGTGGTGCTCCTCC
TCACTGGTCTCTGTGCCACGGGCTACATTATCGCCGGCGAGCTATCCGAT
CAGGGCTCTTTTTATACGTCTCGACGAGCACAAGACATCGCCTGCAAAAT
CCAGTTGCGAGGTTGCTGCTGTTGTCATTATTCCGAGTCTGTCCCCGACA
ATCGCTGTCCTGAATGGGGAACAGATGAGGTTATATCCATGATTGCGGCC
GATTTCCGAATAGCCTCCTTGGCCGCTCTTTTGACCATTCTTTACGACTT
TGGAGGACTTATCACAGGATTTTTGGTCATGAAAAACTTAGACAATTACC
ATTGTGAATATATATGAAGTAAATATCGTCGAATGAAAAATTCCCGACAG
AAAATCCTCGCGGCATGCGACCGTCTGCACGTTTTTTTGAGCAAAAAAAT
ATATGAAATACATTGGAGTTTTCAAAAAACTCTACTTCATGCACATATTA
GACATCAGAGAAGATCCCGGCAGTGATGTACGACATTCTGACGCAAACCG
GTTCCCCCAAAAAAATCCGATACAGAATTCCCGACCTCGAGAGA

protein sequence of rna7959

>rna7959-protein ID=rna7959-protein|Name=rna7959|organism=Nannochloropsis gaditana|type=polypeptide|length=387bp
MKAEYAGESELILSPGQPLVLDGGPCRPTCPPPMPTLTKDVELEIDEDED
EYPVLPGQVWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDG
RICIAVAQVTGARARGVEIEERLVKRFRTRIARAEKARSAVDFAEDAASG
PHNNDDTPMKMATGKKEAVQQASESFKGTRRDGISEGTRGERLLFDQSQH
VEGQERQLKQLQHHLHPQKVLEEGRVKVIWQDLLTVDLFQASVIYLYLLP
EGIQALRSQIEAWLDGHGEGVDGNACCTETLKKKRNVCITRGHDNEYARG
KNEVSSKDEGEDQTVIAVVSNDWSAEGTTCEDDNAEMLCAPKKRRRRRRL
ICNTWGLPGRAPAAVRDVGAMANVRLLLYESPLQSEE

mRNA from alignment at KK037247.1:226896..228633+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7959 ID=rna7959|Name=rna7959|organism=Nannochloropsis gaditana|type=mRNA|length=1738bp|location=Sequence derived from alignment at KK037247.1:226896..228633+ (Nannochloropsis gaditana)
CCATGCTAGAGACTCTACGTGCACTTGAATCGGCTTCAGCATAATTGAAA
CAATTTCCTGACCCTGAAGTGGGCTGAAGCGGACACAAGTTGGGTGGATG
GATTCGTCATTCTCAGTTGATTTTTCTTCAGCGATGACATGATATCGTGT
ACAGCCACAAAGGACCAGGCACGTTTATGAGCTCTTCAAGCATACAACTT
CAATGAAAGGTAACTTTTTACCACTCCTATATACATGCCTGGTTCCAATA
TCATTCCATTGATCTTATTATGTAACGTCACAGCAGAGTACGCTGGAGAA
TCTGAACTTATTTTGTCGCCAGGACAGCCACTGGTCTTGGACGGAGGTCC
CTGTCGACCgacctgccccccgcccatgCCCACATTGACCAAAGATGTCG
AGCTTGAAATCGacgaagatgaagatgaatACCCTGTCCTTCCGGGACAG
GTCTGGATGGAAGGGGactcccttgctcccccttGCCAATCGGATTTGGA
CATAGTTGATGATATTTGTGGCTTGGGCTGCATAGACGCAGACGATGTTT
TCTTCGATCTCGGTTGTGGGGATGGTCGTATATGTATTGCAGTAGCACAG
GTCACCGGGGCAAGGGCGAGAGGAGTCGAAATCGAGGAGAGACTGGTCAA
AAGATTCCGGACGCGCATAGCCCGCGCTGAGAAGGCAAGGTCGGCAGTAG
ATTTCGCTGAAGACGCCGCATCTGGGCCGCACAACAATGATGATACTCCG
ATGAAAATGGcaacaggaaaaaaagaagctgTACAGCAAGCGAGCGAGTC
ATTTAAAGGTACAAGACGTGATGGTATATCAGAGGGGACCCGAGGCGAGC
GACTCCTTTTCGATCAATCGCAGCATGTAGAGGGACAGGAGCGGCAGTTG
AAGCAATTGCAGCATCATCTACACCCCCAAAAGGTCCTAGAAGAAGGCCG
GGTAAAGGTAATTTGGCAGGATTTGCTGACAGTAGACCTTTTTCAAGCGT
CGGTTATCTATTTGTACCTTCTTCCAGAGGGCATCCAGGCATTGAGGTCT
CAAATAGAGGCTTGGTTGGACgggcatggagaaggggTAGATGGAAATGC
GTGTTGTACAGAAACTCTTAAAAAAAAACGTAACGTGTGCATTACTCGGG
GCCACGACAATGAGTATGCCCGGGGCAAGAATGAAGTCTCCTCTAAGGAT
GAAGGTGAAGATCAGACTGTGATCGCTGTCGTAAGCAATGACTGGAGCGC
TGAGGGTACGACTTGCGAGGATGACAACGCGGAGATGTTGTGTGCCCCTA
AGAAGCGACGAAGACGCCGACGATTGATCTGCAATACCTGGGGTCTCCCC
GGACGTGCGCCAGCTGCGGTCAGAGATGTGGGGGCTATGGCGAACGTTAG
ACTCTTGTTGTATGAGTCTCCACTTCAAAGCGAGGAATGAGGCGCTAAGT
GGGACAATCTTGATGTGTTACGATCGAGACCACCAGAGCAAGTCGGTTAC
AGAGTACTGTCTGTCTATGAAAGTATGTAAATATTCTAAAACCAAAACCA
GTTGATAGTAAAAGAAAAGCAGATGTCGAGGCAGTCACCATGTCGAAAGG
TCGGCAATCGCTTGAGTGATAGTAAGACATTGCACGCACGTTTAAAATGA
CAGTTTTGACGCTAATGTTTGAAACGGGCTTGATGTAGAGAACTCACATT
GAAACGCTTAAAGAAAAAATCATCACCCGAAGCAACTT

Coding sequence (CDS) from alignment at KK037247.1:226896..228633+

>rna7959 ID=rna7959|Name=rna7959|organism=Nannochloropsis gaditana|type=CDS|length=2328bp|location=Sequence derived from alignment at KK037247.1:226896..228633+ (Nannochloropsis gaditana)
ATGAAAGCAGAGTACGCTGGAGAATCTGAACTTATTTTGTCGCCAGGACA
GCCACTGGTCTTGGACGGAGGTCCCTGTCGACCgacctgccccccgccca
tgCCCACATTGACCAAAGATGTCGAGCTTGAAATCGacgaagatgaagat
gaatACCCTGTCCTTCCGGGACAGGTCTGGATGGAAGGGGactcccttgc
tcccccttGCCAATCGGATTTGGACATAGTTGATGATATTTGTGGCTTGG
GCTGCATAGACGCAGACGATGTTTTCTTCGATCTCGGTTGTGGGGATGGT
CGTATATGTATTGCAGTAGCACAGGTCACCGGGGCAAGGGCGAGAGGAGT
CGAAATCGAGGAGAGACTGGTCAAAAGATTCCGGACGCGCATAGCCCGCG
CTGAGAAGGCAAGGTCGGCAGTAGATTTCGCTGAAGACGCCGCATCTGGG
CCGCACAACAATGATGATACTCCGATGAAAATGGcaacaggaaaaaaaga
agctgTACAGCAAGCGAGCGAGTCATTTAAAGGTACAAGACGTGATGGTA
TATCAGAGGGGACCCGAGGCGAGCGACTCCTTTTCGATCAATCGCAGCAT
GTAGAGGGACAGGAGCGGCAGTTGAAGCAATTGCAGCATCATCTACACCC
CCAAAAGGTCCTAGAAGAAGGCCGGGTAAAGGTAATTTGGCAGGATTTGC
TGACAGTAGACCTTTTTCAAGCGTCGGTTATCTATTTGTACCTTCTTCCA
GAGGGCATCCAGGCATTGAGGTCTCAAATAGAGGCTTGGTTGGACgggca
tggagaaggggTAGATGGAAATGCGTGTTGTACAGAAACTCTTAAAAAAA
AACGTAACGTGTGCATTACTCGGGGCCACGACAATGAGTATGCCCGGGGC
AAGAATGAAGTCTCCTCTAAGGATGAAGGTGAAGATCAGACTGTGATCGC
TGTCGTAAGCAATGACTGGAGCGCTGAGGGTACGACTTGCGAGGATGACA
ACGCGGAGATGTTGTGTGCCCCTAAGAAGCGACGAAGACGCCGACGATTG
ATCTGCAATACCTGGGGTCTCCCCGGACGTGCGCCAGCTGCGGTCAGAGA
TGTGGGGGCTATGGCGAACGTTAGACTCTTGTTGTATGAGTCTCCACTTC
AAAGCGAGGAATGAATGAAAGCAGAGTACGCTGGAGAATCTGAACTTATT
TTGTCGCCAGGACAGCCACTGGTCTTGGACGGAGGTCCCTGTCGACCgac
ctgccccccgcccatgCCCACATTGACCAAAGATGTCGAGCTTGAAATCG
acgaagatgaagatgaatACCCTGTCCTTCCGGGACAGGTCTGGATGGAA
GGGGactcccttgctcccccttGCCAATCGGATTTGGACATAGTTGATGA
TATTTGTGGCTTGGGCTGCATAGACGCAGACGATGTTTTCTTCGATCTCG
GTTGTGGGGATGGTCGTATATGTATTGCAGTAGCACAGGTCACCGGGGCA
AGGGCGAGAGGAGTCGAAATCGAGGAGAGACTGGTCAAAAGATTCCGGAC
GCGCATAGCCCGCGCTGAGAAGGCAAGGTCGGCAGTAGATTTCGCTGAAG
ACGCCGCATCTGGGCCGCACAACAATGATGATACTCCGATGAAAATGGca
acaggaaaaaaagaagctgTACAGCAAGCGAGCGAGTCATTTAAAGGTAC
AAGACGTGATGGTATATCAGAGGGGACCCGAGGCGAGCGACTCCTTTTCG
ATCAATCGCAGCATGTAGAGGGACAGGAGCGGCAGTTGAAGCAATTGCAG
CATCATCTACACCCCCAAAAGGTCCTAGAAGAAGGCCGGGTAAAGGTAAT
TTGGCAGGATTTGCTGACAGTAGACCTTTTTCAAGCGTCGGTTATCTATT
TGTACCTTCTTCCAGAGGGCATCCAGGCATTGAGGTCTCAAATAGAGGCT
TGGTTGGACgggcatggagaaggggTAGATGGAAATGCGTGTTGTACAGA
AACTCTTAAAAAAAAACGTAACGTGTGCATTACTCGGGGCCACGACAATG
AGTATGCCCGGGGCAAGAATGAAGTCTCCTCTAAGGATGAAGGTGAAGAT
CAGACTGTGATCGCTGTCGTAAGCAATGACTGGAGCGCTGAGGGTACGAC
TTGCGAGGATGACAACGCGGAGATGTTGTGTGCCCCTAAGAAGCGACGAA
GACGCCGACGATTGATCTGCAATACCTGGGGTCTCCCCGGACGTGCGCCA
GCTGCGGTCAGAGATGTGGGGGCTATGGCGAACGTTAGACTCTTGTTGTA
TGAGTCTCCACTTCAAAGCGAGGAATGA

Synonyms

Publications