EWM22731.1, cds7937 (CDS) Nannochloropsis gaditana

Overview
NameEWM22731.1
Unique Namecds7937
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:227098..227104 +
Alignment locationKK037247.1:227179..228335 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22731.1
Productrna methylase
Orig transcript idgnl|cribi|Naga_100209g5.4957.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:227098..227104 +
KK037247.1supercontigKK037247.1:227179..228335 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR026170FAM173
IPR029063SAM-dependent_MTases
Homology
[Close]
BLAST of EWM22731.1 vs. NCBI_GenBank
Match: gi|585103324|gb|EWM22731.1| (rna methylase [Nannochloropsis gaditana])

HSP 1 Score: 795.038 bits (2052), Expect = 0.000e+0
Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 0 
Query:    1 MKAEYAGESELILSPGQPLVLDGGPCRPTCPPPMPTLTKDVELEIDEDEDEYPVLPGQVWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGRICIAVAQVTGARARGVEIEERLVKRFRTRIARAEKARSAVDFAEDAASGPHNNDDTPMKMATGKKEAVQQASESFKGTRRDGISEGTRGERLLFDQSQHVEGQERQLKQLQHHLHPQKVLEEGRVKVIWQDLLTVDLFQASVIYLYLLPEGIQALRSQIEAWLDGHGEGVDGNACCTETLKKKRNVCITRGHDNEYARGKNEVSSKDEGEDQTVIAVVSNDWSAEGTTCEDDNAEMLCAPKKRRRRRRLICNTWGLPGRAPAAVRDVGAMANVRLLLYESPLQSEE 387
            MKAEYAGESELILSPGQPLVLDGGPCRPTCPPPMPTLTKDVELEIDEDEDEYPVLPGQVWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGRICIAVAQVTGARARGVEIEERLVKRFRTRIARAEKARSAVDFAEDAASGPHNNDDTPMKMATGKKEAVQQASESFKGTRRDGISEGTRGERLLFDQSQHVEGQERQLKQLQHHLHPQKVLEEGRVKVIWQDLLTVDLFQASVIYLYLLPEGIQALRSQIEAWLDGHGEGVDGNACCTETLKKKRNVCITRGHDNEYARGKNEVSSKDEGEDQTVIAVVSNDWSAEGTTCEDDNAEMLCAPKKRRRRRRLICNTWGLPGRAPAAVRDVGAMANVRLLLYESPLQSEE
Sbjct:    1 MKAEYAGESELILSPGQPLVLDGGPCRPTCPPPMPTLTKDVELEIDEDEDEYPVLPGQVWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGRICIAVAQVTGARARGVEIEERLVKRFRTRIARAEKARSAVDFAEDAASGPHNNDDTPMKMATGKKEAVQQASESFKGTRRDGISEGTRGERLLFDQSQHVEGQERQLKQLQHHLHPQKVLEEGRVKVIWQDLLTVDLFQASVIYLYLLPEGIQALRSQIEAWLDGHGEGVDGNACCTETLKKKRNVCITRGHDNEYARGKNEVSSKDEGEDQTVIAVVSNDWSAEGTTCEDDNAEMLCAPKKRRRRRRLICNTWGLPGRAPAAVRDVGAMANVRLLLYESPLQSEE 387
[Close]
BLAST of EWM22731.1 vs. NCBI_GenBank
Match: gi|585103325|gb|EWM22732.1| (rna methylase [Nannochloropsis gaditana])

HSP 1 Score: 788.875 bits (2036), Expect = 0.000e+0
Identity = 384/384 (100.00%), Postives = 384/384 (100.00%), Query Frame = 0 
Query:    4 EYAGESELILSPGQPLVLDGGPCRPTCPPPMPTLTKDVELEIDEDEDEYPVLPGQVWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGRICIAVAQVTGARARGVEIEERLVKRFRTRIARAEKARSAVDFAEDAASGPHNNDDTPMKMATGKKEAVQQASESFKGTRRDGISEGTRGERLLFDQSQHVEGQERQLKQLQHHLHPQKVLEEGRVKVIWQDLLTVDLFQASVIYLYLLPEGIQALRSQIEAWLDGHGEGVDGNACCTETLKKKRNVCITRGHDNEYARGKNEVSSKDEGEDQTVIAVVSNDWSAEGTTCEDDNAEMLCAPKKRRRRRRLICNTWGLPGRAPAAVRDVGAMANVRLLLYESPLQSEE 387
            EYAGESELILSPGQPLVLDGGPCRPTCPPPMPTLTKDVELEIDEDEDEYPVLPGQVWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGRICIAVAQVTGARARGVEIEERLVKRFRTRIARAEKARSAVDFAEDAASGPHNNDDTPMKMATGKKEAVQQASESFKGTRRDGISEGTRGERLLFDQSQHVEGQERQLKQLQHHLHPQKVLEEGRVKVIWQDLLTVDLFQASVIYLYLLPEGIQALRSQIEAWLDGHGEGVDGNACCTETLKKKRNVCITRGHDNEYARGKNEVSSKDEGEDQTVIAVVSNDWSAEGTTCEDDNAEMLCAPKKRRRRRRLICNTWGLPGRAPAAVRDVGAMANVRLLLYESPLQSEE
Sbjct:    3 EYAGESELILSPGQPLVLDGGPCRPTCPPPMPTLTKDVELEIDEDEDEYPVLPGQVWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGRICIAVAQVTGARARGVEIEERLVKRFRTRIARAEKARSAVDFAEDAASGPHNNDDTPMKMATGKKEAVQQASESFKGTRRDGISEGTRGERLLFDQSQHVEGQERQLKQLQHHLHPQKVLEEGRVKVIWQDLLTVDLFQASVIYLYLLPEGIQALRSQIEAWLDGHGEGVDGNACCTETLKKKRNVCITRGHDNEYARGKNEVSSKDEGEDQTVIAVVSNDWSAEGTTCEDDNAEMLCAPKKRRRRRRLICNTWGLPGRAPAAVRDVGAMANVRLLLYESPLQSEE 386
[Close]
BLAST of EWM22731.1 vs. NCBI_GenBank
Match: gi|1214711486|gb|OWZ22493.1| (hypothetical protein PHMEG_0002809 [Phytophthora megakarya])

HSP 1 Score: 109.768 bits (273), Expect = 9.090e-25
Identity = 59/100 (59.00%), Postives = 68/100 (68.00%), Query Frame = 0 
Query:   37 LTKDVELEIDEDEDEYPVLPGQ-VWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGRICIAVAQVTGARARGVEIEERLVKRFRTRIARAE 135
            +TK V    DE+ DE    PG  +W+EGDSLAPPCQSD D+V  I  +  +  DDV FDLGCGDGRICI  A+  GARARGVEIEE L+KRFR  I   E
Sbjct:    1 MTKPVHF--DEESDEEEQNPGAFMWIEGDSLAPPCQSDRDVVSKIVEIARVTPDDVLFDLGCGDGRICIEAAKRFGARARGVEIEEFLIKRFRELIVANE 98
[Close]
BLAST of EWM22731.1 vs. NCBI_GenBank
Match: gi|953488175|emb|CEG48192.1| (FAM173 family [Plasmopara halstedii])

HSP 1 Score: 114.39 bits (285), Expect = 2.340e-24
Identity = 62/123 (50.41%), Postives = 71/123 (57.72%), Query Frame = 0 
Query:   17 QPLVLDGGPCRPTCPPPMPTL------TKDVELEIDEDEDEYPVLPGQV-WMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGRICIAVAQVTGARARGVEIEERLVKRFRTRIA 132
            Q + L      P   PP PT       T    +  ++D DE    PG + W+EGDSLAPPCQSD DIV  I     +   DV FDLGCGDGRICI  A+  GARARGVEIEE L+ RFR  IA
Sbjct:  278 QQISLFSSAALPLETPPAPTAGNYIHHTNQKPMVFNDDSDEEQQNPGALMWLEGDSLAPPCQSDHDIVSKIVEFARVTPADVLFDLGCGDGRICIEAAKRYGARARGVEIEEFLIMRFRELIA 400
[Close]
BLAST of EWM22731.1 vs. NCBI_GenBank
Match: gi|695392641|ref|XP_009520393.1| (hypothetical protein PHYSODRAFT_359407 [Phytophthora sojae] >gi|348685290|gb|EGZ25105.1| hypothetical protein PHYSODRAFT_359407 [Phytophthora sojae])

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-24
Identity = 55/89 (61.80%), Postives = 64/89 (71.91%), Query Frame = 0 
Query:   45 IDEDEDEYPVLPGQ-VWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGRICIAVAQVTGARARGVEIEERLVKRFRTRIA 132
             DE+ DE    PG  +W+EGDSLAPPCQS+ D+V  I  +  +  DDV FDLGCGDGRICI  A+  GARARGVEIEE L+KRFR  IA
Sbjct:    9 FDEESDEEEQNPGTFMWIEGDSLAPPCQSERDVVSKIVEIARVTPDDVLFDLGCGDGRICIEAAKRFGARARGVEIEEFLIKRFRELIA 97
[Close]
BLAST of EWM22731.1 vs. NCBI_GenBank
Match: gi|675211541|ref|XP_008914655.1| (hypothetical protein PPTG_18341 [Phytophthora parasitica INRA-310] >gi|567946636|gb|ETK72442.1| hypothetical protein L915_20445 [Phytophthora parasitica] >gi|567975343|gb|ETL25898.1| hypothetical protein L916_20306 [Phytophthora parasitica] >gi|568004797|gb|ETL79107.1| hypothetical protein L917_20178 [Phytophthora parasitica] >gi|568085157|gb|ETN00071.1| hypothetical protein PPTG_18341 [Phytophthora parasitica INRA-310] >gi|570936671|gb|ETP01928.1| hypothetical protein F441_20898 [Phytophthora parasitica CJ01A1] >gi|970633819|gb|KUF79315.1| Ribosomal protein L11 methyltransferase [Phytophthora nicotianae] >gi|970652994|gb|KUF91553.1| Syntaxin-18 [Phytophthora nicotianae] >gi|970658822|gb|KUF96541.1| Ribosomal protein L11 methyltransferase [Phytophthora nicotianae])

HSP 1 Score: 106.686 bits (265), Expect = 1.150e-23
Identity = 54/91 (59.34%), Postives = 65/91 (71.43%), Query Frame = 0 
Query:   43 LEIDEDEDEYPVLPGQ-VWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGRICIAVAQVTGARARGVEIEERLVKRFRTRIA 132
            +  DE+ DE    PG  +W+EGDSLAPPCQS+ D+V  I  +  +  DDV FDLGCGDGRICI  A+  GARARGVEIE+ L+KRFR  IA
Sbjct:    7 VRFDEESDEEEQNPGAFMWIEGDSLAPPCQSEHDVVSKIVEIARVTPDDVLFDLGCGDGRICIEAAKRYGARARGVEIEDFLIKRFRELIA 97
[Close]
BLAST of EWM22731.1 vs. NCBI_GenBank
Match: gi|566009147|gb|ETI32058.1| (hypothetical protein F443_21041 [Phytophthora parasitica P1569] >gi|568034701|gb|ETM32368.1| hypothetical protein L914_20198 [Phytophthora parasitica] >gi|570312853|gb|ETO60801.1| hypothetical protein F444_21047 [Phytophthora parasitica P1976] >gi|570966954|gb|ETP30073.1| hypothetical protein F442_20849 [Phytophthora parasitica P10297])

HSP 1 Score: 105.531 bits (262), Expect = 3.697e-23
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 0 
Query:   43 LEIDEDEDEYPVLPGQ-VWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGRICIAVAQVTGARARGVEIEERLVKRFRTRIA 132
            +  DE+ DE    PG  +W+EGDSLAPPCQS+ D+V  I  +  +  DDV FDLGCGDGRICI  A+  GARARGVEIE+ L+KRFR  I 
Sbjct:    7 VRFDEESDEEEQNPGAFMWIEGDSLAPPCQSEHDVVSKIVEIARVTPDDVLFDLGCGDGRICIEAAKRYGARARGVEIEDFLIKRFRELIT 97
[Close]
BLAST of EWM22731.1 vs. NCBI_GenBank
Match: gi|301091783|ref|XP_002896068.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262095022|gb|EEY53074.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 103.605 bits (257), Expect = 1.494e-22
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 0 
Query:   56 PGQ-VWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGRICIAVAQVTGARARGVEIEERLVKRFRTRIARAE 135
            PG  +W+EGDSLAPPCQSD D+V  I  +  +   DV FDLGCGDGRICI  A+  GAR+RGVEIE+ L+KRFR +IA  E
Sbjct:   19 PGAFMWIEGDSLAPPCQSDRDVVSKIVEIARVTPSDVLFDLGCGDGRICIEAAKCYGARSRGVEIEKYLIKRFREQIAANE 99
[Close]
BLAST of EWM22731.1 vs. NCBI_GenBank
Match: gi|673030504|ref|XP_008869213.1| (hypothetical protein H310_06077 [Aphanomyces invadans] >gi|574475608|gb|ETW02608.1| hypothetical protein H310_06077 [Aphanomyces invadans])

HSP 1 Score: 102.064 bits (253), Expect = 3.591e-22
Identity = 52/97 (53.61%), Postives = 67/97 (69.07%), Query Frame = 0 
Query:   38 TKDVELEIDE-DEDEYPVLPGQVWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGRICIAVAQVTGARARGVEIEERLVKRFRTRIAR 133
            TK+ E   DE DE  +      +W+EGDSLAPPCQS+ D+V +I  L  + A+DV FDLGCGDGRICIA A+  GA A G+EIEE L+ +F+ +I R
Sbjct:    3 TKEAEWSDDEGDESTF------MWLEGDSLAPPCQSEYDVVHEILKLANVTANDVVFDLGCGDGRICIAAARKYGASAVGIEIEEHLIAKFQGKIDR 93
[Close]
BLAST of EWM22731.1 vs. NCBI_GenBank
Match: gi|698787304|ref|XP_009826684.1| (hypothetical protein H257_04025 [Aphanomyces astaci] >gi|574117773|gb|ETV83254.1| hypothetical protein H257_04025 [Aphanomyces astaci])

HSP 1 Score: 100.523 bits (249), Expect = 1.441e-21
Identity = 48/88 (54.55%), Postives = 63/88 (71.59%), Query Frame = 0 
Query:   46 DEDEDEYPVLPGQVWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGRICIAVAQVTGARARGVEIEERLVKRFRTRIAR 133
            D++ DE+  +    W+EGDSLAPPCQS+ D+V +I  L  + ADDV FDLGCGDGRICIA A+  GA A G+EIE  L+ +F+ +I R
Sbjct:    9 DDEGDEFTYM----WLEGDSLAPPCQSEYDVVHEILQLANVAADDVVFDLGCGDGRICIAAARRHGASAVGIEIEAHLIDKFQRKIDR 92
The following BLAST results are available for this feature:
BLAST of EWM22731.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103324|gb|EWM22731.1|0.000e+0100.00rna methylase [Nannochloropsis gaditana][more]
gi|585103325|gb|EWM22732.1|0.000e+0100.00rna methylase [Nannochloropsis gaditana][more]
gi|1214711486|gb|OWZ22493.1|9.090e-2559.00hypothetical protein PHMEG_0002809 [Phytophthora m... [more]
gi|953488175|emb|CEG48192.1|2.340e-2450.41FAM173 family [Plasmopara halstedii][more]
gi|695392641|ref|XP_009520393.1|2.905e-2461.80hypothetical protein PHYSODRAFT_359407 [Phytophtho... [more]
gi|675211541|ref|XP_008914655.1|1.150e-2359.34hypothetical protein PPTG_18341 [Phytophthora para... [more]
gi|566009147|gb|ETI32058.1|3.697e-2358.24hypothetical protein F443_21041 [Phytophthora para... [more]
gi|301091783|ref|XP_002896068.1|1.494e-2261.73conserved hypothetical protein [Phytophthora infes... [more]
gi|673030504|ref|XP_008869213.1|3.591e-2253.61hypothetical protein H310_06077 [Aphanomyces invad... [more]
gi|698787304|ref|XP_009826684.1|1.441e-2154.55hypothetical protein H257_04025 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7959rna7959Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications