rna7933, rna7933 (mRNA) Nannochloropsis gaditana

Overview
Namerna7933
Unique Namerna7933
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1323
Alignment locationKK037247.1:141153..144289 -

Link to JBrowse

Properties
Property NameValue
Productchromatin associated protein kti12
Orig transcript idgnl|cribi|Naga_100297g4.7172.mrna
Orig protein idgnl|cribi|Naga_100297g4.7172
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:141153..144289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100297g4gene7684Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7933rna7933-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22764.1cds7911Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7933 ID=rna7933|Name=rna7933|organism=Nannochloropsis gaditana|type=mRNA|length=1323bp
AGTCCTGCTACCATGCGTTGTGTCCCTTACCATCGAAAATATATCTTACT
GGCCTTCTGATATCTTTTCGCTTGTTGTCACATTCTGTATATCTTAAAAA
AGAAGCGCAATACAGTTTCGAAGGCAGGAACGAACTCGCTGACGCGCGCT
GCGAACACAGCAGCAAGATGTCTTCAGCTTCAGCAAACTACTTTTCTACA
GCTATATTCGGTCAGAGCCAAGAGAAAAGAACTCTTGTTTTGCCAGTCAC
TTCACCTGTGGGGGACCTCTCCTCTTCCTCCTGTCCCCCCACAACTCAGG
GGAGCGGGTCGAAAAATGCCAACGGGCTGCCTTCAAAATCCGTCAATTCC
ACACCAGACGGCGGCAATTCTGATTTTAAAAATAAATATACACCTTTTCC
TCCCACAACCCATTCAATTTCTCCTTCTTCACCATCTCCACGCTTTCGGG
ACTGGCTTCGGCCATCCAAAATGACGTCCTCAGTCTCTGCCCTTCTCGAC
GTGTGGATTCCATGGCTGACCTACCTTGGGATAGGTATCGGAAGCGAAAA
CTTTGTAGTTGGAGGTCTGGTTGCGGCAGGTGTGGCGATTGCGGGATTCA
TTTTCCAAGCTTTCCGGTTCTACTACCAGAGGACTTTGCGGACTTGGCCG
AAGCCACAAGCAGTAGGAATCCTTATGACCTGGGTGGGCAACGCCGTATA
CGTATCTAGAATAGCTTCCAACAAAGAGACAGCATCCCGATACACTCTCC
TCGTCGTTATCACAGGTGTAGTGCTGTCAAATTTCATCGCGATAGTCATG
GGTCATCCAGCCTTACTCGATGAAGCGAAAGAGCACGTGGCGAGCGAGGA
AGAGGAGAAACACCCTCTCTTCCTCCGGATGCATACCATCGCATCGTACG
GCCTTCTCTTTCTGAGCCTCCTGCAGTGGCCCTGCTTTTTCCTCGCGGCT
TTCAGATTTCCAAACGATAAAGCCCTAACTCCGATTCTCCTTCTTGCATT
GCCCCTTGGAAGCCTTATCATAACGCTTGTTATCATCACTTTGTATTTGC
GACGGGAAGAAAAAAGGCTTTCTCAGGCGATGCGAGCTCCCCTCCTCGCC
GTGGACGTTGAGCAGGGGGGATAGGCTGCAATCGTGTGAATTTTCTTCCC
CTAATGCTTCTTTGGAAGCATGATGGAAAGGCCCAGCTTGTACGTTGGGA
CTTTAGGCGCCTCGCCTGTGAACTTGACTGCCGATGAGAGCAGCCACCGA
GTTTGCGAGTAGCACATGTACACTTGAAAGAGCACAAGGAAAGGAAAGGA
ATAGAAAAGACCTACTGCAAATT
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protein sequence of rna7933

>rna7933-protein ID=rna7933-protein|Name=rna7933|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MARAETTQHCVVWVALEHQHVARAWNESREDRYPPELFDDLWGRFEAPVE
GNRWDRPLICYSPRPPSEGAEEKEGRRSTRDEVYQQVLAAITEGKAPAAG
LSTATAPRNDADALFLLDQVTQRLLSSILERQKTSMPGDIITVPEARTPV
CFRR
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mRNA from alignment at KK037247.1:141153..144289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7933 ID=rna7933|Name=rna7933|organism=Nannochloropsis gaditana|type=mRNA|length=3137bp|location=Sequence derived from alignment at KK037247.1:141153..144289- (Nannochloropsis gaditana)
CCTTCCAGCAAGCAAGGCGACAGCCATCAGCAACGTGCTTATGCAGGTAT GGCTTTCCCCCGTCTTTTAACACGCGAAGCTGCGGATTCTCTCCAATCAG GCAGTCTATCACCTTCTTTGCATTTTACTTTAAGCGTTTTCATCCATGGA TTAAGCGTTGGTGTATGTTGAGGACTAAAAATATCATCCCTCTTTTATTC CCCTACCTGGCAGGCCAGTGCGTCCTCTTCTTAACGACGTCTTGTCTCCC CTCTATCAGGTATGAATTGCTTTAAGAAGAATTCTCTGTACTTTTTAATT CGTTGTTAGATGCATTGGAAAGTGTGCTTCGGGCGATTGGTCGATTATTG AGGGGTATTGCTGGATTCCATGGCGCGCTCTGGAGCCACGTTCACCTCGT CCTTTTGTATTGAACAACCTTCTATCTGTCGTTCTTCTAAATTTCTTACC ATAATCCTTCTCTAACAAATCCTTCATTGTAATAGTGATGCCCCTGATCA CCATCTGTGGGCAACCAGCGTCGGGAAAGACGACCTTTGCCCACGGCTTG GTTGAGTACTTAAAAAAGAAGCTGCCAAATCCGTGCAGGCCTGGAAAGGG CAAGGACGAAGAAGACAGGGGCTCTGCAGTGGTCCTCGTCAATGAGGAAG CACTGCCAGTTTTGAAAGCGGAGGGGTATCGAGGTCGGTGCAGTCGTGGT TAGGACGGGAATTTTACCTGGGGTGGCTGAAAGATGTGTATGCCTCCTCT CTATCCTCGTTTGCGATGCCAGTACAGCATCGATATTTCTAATTTACCAA TTTATTAATTGCTTCTCTATCCACAGATGCTGCGGCCGAAAAAATCACCC GCGGGGAGCTTAAGAGCAAGGTGGATCATGCCCTCAACCGTGACACGGTC GTCGTCTTGGACAGCCTGAATTACATCAAGGGGTTCCGCTACCAACTGTA CTGCATGGCACGTGCCGAGACGACGCAACATTGCGTGGTGCGTGGAAGTT TAGAGCAGATGAGAAGGGATGAGGGGATGAAGGTGAAGGTTTCAGGGTGG CAAGGACAAGGGAGGGGGTAATCTATGTATCCTGACCCTCACCCGATGAA GACGGGCATACGCATTGAATTGCGGACAAGTAAACACTCAAGCGCGGGGG TACCGTAAGAACCTTCATGTTGGACGGTCACCGATGCGCCTGCTCTTTCC TTCTTTCTTTCCTCTCTCTTGTGGCGTTGAACAGGTATGGGTGGCCCTTG AACACCAACACGTGGCTCGGGCCTGGAATGAAAGCAGGGAGGACCGCTAC CCCCCTGAACTGTACGCAAGAGGGGGGGGGGAGGCGAAGGGGAATGTGGA TGGGGAAAAGGAGGGGCGGATAGAAAGGGAGGAGAGGTTCCTTGGTGGGA ACCGCGGGCCCACAATGCCCAGACTGGCACGGCCAAGCTTTCCTGACCAT CTTGTCCGCTGGCTTGCCCCCCCTTCTCCCCCCCTCCCTTTCACCACAGC TTCGACGATCTGTGGGGGCGTTTTGAGGCTCCGGTGGAGGGCAATCGCTG GGACAGGCCGCTCATATGCTACAGTCCCCGTCCGCCCTCGGAGGGGGCGG AGGAAAAGGAGGGTCGAAGAAGCACGCGGGATGAGGTGTATCAACAAGTA TTAGCCGCCATAACGGAAGGGAAAGCCCCTGCTGCTGGTCTCTCTACCGC CACGGTAATAAAGGAAAGGGGGCCAAAGAGAGAGAGAAGAGGGGGGGAAG GGGGAGAAAGGAGGAGAGTGGGAGGGAGTTGGAGTTGGTAGGTAGAAGAT GGGCGACGGAACGTGTGGTATAGGCCAAGGAGGCTCAAGACGAGGACAGG GAGGGCTGGAGTGGGGTAGGCAGGCTTGAGATAGACGGGTGATTCCCACC CCCCCGACAGTGTTTCTGTTCCGAGGTCCTAGAATTCTACCCATGCTGCT CCCGAAAGGAAGGAGAAAGGGTGGGAGGCGGGGGTCGATGACGCGGACAG TTGTCAAACTCGGGGCAGAACAAGGTGCCTCTTGTCGATTGTTTTTGACA GGATGGTATCTGTCTTCTCCCAGTCCTTTCCTCTGTGCCCATGCGGCAGG GGAGGAAATTTGAGCGACCGGGTCCTAGCAGCTCTCGCTCTCGCTGAGGG GAAGGCGACAGACTTCACTCACCTCGGTGCCCCCATCCTTTCCCAGTATA TCGCACAATTGATATTTTTCTGGTCTCTTGGTTGATGAAACCGGTTCACC TTTTTTTGGCAGTCATCTGTGCATTCCCACGCTCCCTCCCTCCCTCTCTT CATTCTCCTTTCCTCCCTCCAGGCCCCGCGCAATGACGCAGACGCTCTTT TCCTCCTGGACCAAGTCACCCAACGCCTCCTTTCCTCCATCCTCGAACGG CAAAAAACTTCCATGCCCGGCGACATCATTACAGTCCCGGAGGCGCGTAC GCCAGTGTGCTTTCGACGGTAATGTGCCTGACTGCTTGTGCCTCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCTTGTTCCAGGGAACTCCATTAAGGAC TGTCTCTCGCCTTTTTTGGAAGCACGACTGACGTGGGGCATCAAGTTTCT GGGATCGAAACCTGGTGTAGCTCACGATACGATTTATCATTCTGGGTTAA ATATCTTTCTGGCCTGCTCCCTGTATCGTCCACCCACCATTTTTTCGGAT TAAGCAATGCACCTTGAAAACATTTGAGTCCTTAATTAAAGCGCATTGCA TCGGGTATACAGGCACGTTGGTCTTCCCGAACTGAAGAGGCTTCGAAGGC AATTTCTAAAGCAAGCTTCTGACTGGGCCGCTGCCACTCTGGGGGGCGGA GGAGGGGACAAAGAGGGAGGAGAGGAGGTCGGGAAGGAGGACTCGAGGGA GAGAGCGGTGGGCGATGCATTTGTCCAGTACTTGAATCTGCACACGACCT AGGATCGCGGGGGGAGGGGAGGGGTTGCGGGCATGTACAGTGGGAGGCAA GAGGGGGAACGAGGATGGAATGTAAATAACGCCGACATAGCCTGCCGGTA AATCTAACGGAAGTAAACGTCAACGCGCCGCAAGAGAAGTGTGGCGCACG GCGTCGCTGGCAAGGTATTGACAACCGAGGAATTTGC
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Coding sequence (CDS) from alignment at KK037247.1:141153..144289-

>rna7933 ID=rna7933|Name=rna7933|organism=Nannochloropsis gaditana|type=CDS|length=1860bp|location=Sequence derived from alignment at KK037247.1:141153..144289- (Nannochloropsis gaditana)
GCCCCGCGCAATGACGCAGACGCTCTTTTCCTCCTGGACCAAGTCACCCA
ACGCCTCCTTTCCTCCATCCTCGAACGGCAAAAAACTTCCATGCCCGGCG
ACATCATTACAGTCCCGGAGGCGCGTACGCCAGTGTGCTTTCGACGGTAA
CTTCGACGATCTGTGGGGGCGTTTTGAGGCTCCGGTGGAGGGCAATCGCT
GGGACAGGCCGCTCATATGCTACAGTCCCCGTCCGCCCTCGGAGGGGGCG
GAGGAAAAGGAGGGTCGAAGAAGCACGCGGGATGAGGTGTATCAACAAGT
ATTAGCCGCCATAACGGAAGGGAAAGCCCCTGCTGCTGGTCTCTCTACCG
CCACGGTATGGGTGGCCCTTGAACACCAACACGTGGCTCGGGCCTGGAAT
GAAAGCAGGGAGGACCGCTACCCCCCTGAACTATGGCACGTGCCGAGACG
ACGCAACATTGCGTGGCCCCGCGCAATGACGCAGACGCTCTTTTCCTCCT
GGACCAAGTCACCCAACGCCTCCTTTCCTCCATCCTCGAACGGCAAAAAA
CTTCCATGCCCGGCGACATCATTACAGTCCCGGAGGCGCGTACGCCAGTG
TGCTTTCGACGGTAACTTCGACGATCTGTGGGGGCGTTTTGAGGCTCCGG
TGGAGGGCAATCGCTGGGACAGGCCGCTCATATGCTACAGTCCCCGTCCG
CCCTCGGAGGGGGCGGAGGAAAAGGAGGGTCGAAGAAGCACGCGGGATGA
GGTGTATCAACAAGTATTAGCCGCCATAACGGAAGGGAAAGCCCCTGCTG
CTGGTCTCTCTACCGCCACGGTATGGGTGGCCCTTGAACACCAACACGTG
GCTCGGGCCTGGAATGAAAGCAGGGAGGACCGCTACCCCCCTGAACTATG
GCACGTGCCGAGACGACGCAACATTGCGTGGCCCCGCGCAATGACGCAGA
CGCTCTTTTCCTCCTGGACCAAGTCACCCAACGCCTCCTTTCCTCCATCC
TCGAACGGCAAAAAACTTCCATGCCCGGCGACATCATTACAGTCCCGGAG
GCGCGTACGCCAGTGTGCTTTCGACGGTAACTTCGACGATCTGTGGGGGC
GTTTTGAGGCTCCGGTGGAGGGCAATCGCTGGGACAGGCCGCTCATATGC
TACAGTCCCCGTCCGCCCTCGGAGGGGGCGGAGGAAAAGGAGGGTCGAAG
AAGCACGCGGGATGAGGTGTATCAACAAGTATTAGCCGCCATAACGGAAG
GGAAAGCCCCTGCTGCTGGTCTCTCTACCGCCACGGTATGGGTGGCCCTT
GAACACCAACACGTGGCTCGGGCCTGGAATGAAAGCAGGGAGGACCGCTA
CCCCCCTGAACTATGGCACGTGCCGAGACGACGCAACATTGCGTGGCCCC
GCGCAATGACGCAGACGCTCTTTTCCTCCTGGACCAAGTCACCCAACGCC
TCCTTTCCTCCATCCTCGAACGGCAAAAAACTTCCATGCCCGGCGACATC
ATTACAGTCCCGGAGGCGCGTACGCCAGTGTGCTTTCGACGGTAACTTCG
ACGATCTGTGGGGGCGTTTTGAGGCTCCGGTGGAGGGCAATCGCTGGGAC
AGGCCGCTCATATGCTACAGTCCCCGTCCGCCCTCGGAGGGGGCGGAGGA
AAAGGAGGGTCGAAGAAGCACGCGGGATGAGGTGTATCAACAAGTATTAG
CCGCCATAACGGAAGGGAAAGCCCCTGCTGCTGGTCTCTCTACCGCCACG
GTATGGGTGGCCCTTGAACACCAACACGTGGCTCGGGCCTGGAATGAAAG
CAGGGAGGACCGCTACCCCCCTGAACTATGGCACGTGCCGAGACGACGCA
ACATTGCGTG
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Synonyms
Publications