EWM22763.1, cds7910 (CDS) Nannochloropsis gaditana

Overview
NameEWM22763.1
Unique Namecds7910
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:139767..140336 +
Alignment locationKK037247.1:140461..140695 +
Alignment locationKK037247.1:140809..140960 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22763.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100297g3.7171.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:139767..140336 +
KK037247.1supercontigKK037247.1:140461..140695 +
KK037247.1supercontigKK037247.1:140809..140960 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM22763.1 vs. NCBI_GenBank
Match: gi|585103365|gb|EWM22763.1| (hypothetical protein Naga_100297g3 [Nannochloropsis gaditana])

HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 0 
Query:    1 MSSASANYFSTAIFGQSQEKRTLVLPVTSPVGDLSSSSCPPTTQGSGSKNANGLPSKSVNSTPDGGNSDFKNKYTPFPPTTHSISPSSPSPRFRDWLRPSKMTSSVSALLDVWIPWLTYLGIGIGSENFVVGGLVAAGVAIAGFIFQAFRFYYQRTLRTWPKPQAVGILMTWVGNAVYVSRIASNKETASRYTLLVVITGVVLSNFIAIVMGHPALLDEAKEHVASEEEEKHPLFLRMHTIASYGLLFLSLLQWPCFFLAAFRFPNDKALTPILLLALPLGSLIITLVIITLYLRREEKRLSQAMRAPLLAVDVEQGG 318
            MSSASANYFSTAIFGQSQEKRTLVLPVTSPVGDLSSSSCPPTTQGSGSKNANGLPSKSVNSTPDGGNSDFKNKYTPFPPTTHSISPSSPSPRFRDWLRPSKMTSSVSALLDVWIPWLTYLGIGIGSENFVVGGLVAAGVAIAGFIFQAFRFYYQRTLRTWPKPQAVGILMTWVGNAVYVSRIASNKETASRYTLLVVITGVVLSNFIAIVMGHPALLDEAKEHVASEEEEKHPLFLRMHTIASYGLLFLSLLQWPCFFLAAFRFPNDKALTPILLLALPLGSLIITLVIITLYLRREEKRLSQAMRAPLLAVDVEQGG
Sbjct:    1 MSSASANYFSTAIFGQSQEKRTLVLPVTSPVGDLSSSSCPPTTQGSGSKNANGLPSKSVNSTPDGGNSDFKNKYTPFPPTTHSISPSSPSPRFRDWLRPSKMTSSVSALLDVWIPWLTYLGIGIGSENFVVGGLVAAGVAIAGFIFQAFRFYYQRTLRTWPKPQAVGILMTWVGNAVYVSRIASNKETASRYTLLVVITGVVLSNFIAIVMGHPALLDEAKEHVASEEEEKHPLFLRMHTIASYGLLFLSLLQWPCFFLAAFRFPNDKALTPILLLALPLGSLIITLVIITLYLRREEKRLSQAMRAPLLAVDVEQGG 318
[Close]
BLAST of EWM22763.1 vs. NCBI_GenBank
Match: gi|553190332|ref|XP_005855169.1| (hypothetical protein NGA_0130100 [Nannochloropsis gaditana CCMP526] >gi|422293893|gb|EKU21193.1| hypothetical protein NGA_0130100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 343.969 bits (881), Expect = 5.037e-117
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0 
Query:  102 MTSSVSALLDVWIPWLTYLGIGIGSENFVVGGLVAAGVAIAGFIFQAFRFYYQRTLRTWPKPQAVGILMTWVGNAVYVSRIASNKETASRYTLLVVITGVVLSNFIAIVMGHPALLDEAKEHVASEEEEKHPLFLRMHTIASYGLLFLSLLQWPCFFLAAFRFPNDKA 269
            MTSSVSALLDVWIPWLTYLGIGIGSENFVVGGLVAAGVAIAGFIFQAFRFYYQRTLRTWPKPQAVGILMTWVGNAVYVSRIASNKETASRYTLLVVITGVVLSNFIAIVMGHPALLDEAKEHVASEEEEKHPLFLRMHTIASYGLLFLSLL+WPCFFLAAFRFPNDK 
Sbjct:    1 MTSSVSALLDVWIPWLTYLGIGIGSENFVVGGLVAAGVAIAGFIFQAFRFYYQRTLRTWPKPQAVGILMTWVGNAVYVSRIASNKETASRYTLLVVITGVVLSNFIAIVMGHPALLDEAKEHVASEEEEKHPLFLRMHTIASYGLLFLSLLEWPCFFLAAFRFPNDKG 168
The following BLAST results are available for this feature:
BLAST of EWM22763.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103365|gb|EWM22763.1|0.000e+0100.00hypothetical protein Naga_100297g3 [Nannochloropsi... [more]
gi|553190332|ref|XP_005855169.1|5.037e-11798.81hypothetical protein NGA_0130100 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7932rna7932Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications