EWM22769.1, cds7907 (CDS) Nannochloropsis gaditana

Overview
NameEWM22769.1
Unique Namecds7907
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:133382..133754 +
Alignment locationKK037247.1:133903..134007 +
Alignment locationKK037247.1:134205..134302 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22769.1
ProductRestriction endonuclease, type II
Orig transcript idgnl|cribi|Naga_100554g5.203.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:133382..133754 +
KK037247.1supercontigKK037247.1:133903..134007 +
KK037247.1supercontigKK037247.1:134205..134302 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO:0003684damaged DNA binding
GO:0004519endonuclease activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR011335Restrct_endonuc-II-like
IPR004579DNA_repair_Rad10
Homology
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|585103373|gb|EWM22769.1| (Restriction endonuclease, type II [Nannochloropsis gaditana])

HSP 1 Score: 386.341 bits (991), Expect = 9.265e-136
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query:    1 MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191
            MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR
Sbjct:    1 MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191          
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|585103372|gb|EWM22768.1| (Restriction endonuclease, type II [Nannochloropsis gaditana])

HSP 1 Score: 318.161 bits (814), Expect = 4.592e-109
Identity = 161/169 (95.27%), Postives = 162/169 (95.86%), Query Frame = 0
Query:    1 MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIF 169
            MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDY    +  C F
Sbjct:    1 MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYE--PWDLCSF 167          
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|545358865|ref|XP_005644951.1| (DNA repair protein rad10, partial [Coccomyxa subellipsoidea C-169] >gi|384246919|gb|EIE20407.1| DNA repair protein rad10, partial [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 86.2705 bits (212), Expect = 1.790e-17
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 0
Query:  127 NVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191
            N + VS RQEGNPVLK I+NVR+QF   IVPDY +G  TC +F+SLRYHLL   Y++ R+KEL+R
Sbjct:    1 NAVLVSKRQEGNPVLKHIRNVRWQF-TDIVPDYQMGPNTCALFLSLRYHLLKPTYIYGRIKELQR 64          
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|552845437|ref|XP_005851351.1| (hypothetical protein CHLNCDRAFT_19196 [Chlorella variabilis] >gi|307111014|gb|EFN59249.1| hypothetical protein CHLNCDRAFT_19196 [Chlorella variabilis])

HSP 1 Score: 87.8113 bits (216), Expect = 1.898e-17
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 0
Query:  127 NVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191
            N I VS RQEGNPVLK I+NVR+QF   IVPD++LG  T C+F+SLR+HLL  +Y++ R+KEL+R
Sbjct:   42 NAIIVSTRQEGNPVLKYIRNVRWQF-GDIVPDFLLGRETACLFLSLRFHLLKPEYIYHRIKELQR 105          
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|302782932|ref|XP_002973239.1| (hypothetical protein SELMODRAFT_98787, partial [Selaginella moellendorffii] >gi|300158992|gb|EFJ25613.1| hypothetical protein SELMODRAFT_98787, partial [Selaginella moellendorffii])

HSP 1 Score: 84.3445 bits (207), Expect = 1.375e-16
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 0
Query:  123 SAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191
            S   N I VS RQ+GNPVLK I+NVR+ F   IVPDYVLG  +C +++S+RYHLLH  YL+ R++EL++
Sbjct:   13 SQSRNAILVSRRQQGNPVLKFIRNVRWTF-DDIVPDYVLGQSSCALYLSIRYHLLHPDYLYFRIRELQK 80          
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|567202923|ref|XP_006408101.1| (hypothetical protein EUTSA_v10020823mg [Eutrema salsugineum] >gi|557109247|gb|ESQ49554.1| hypothetical protein EUTSA_v10020823mg [Eutrema salsugineum])

HSP 1 Score: 86.2705 bits (212), Expect = 1.737e-16
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 0
Query:  119 SHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191
            S N +   N I VS RQ+GNP+LK I+NV++ F   I+PDY+LG  TC +++SLRYHLLH  YL+ R++EL++
Sbjct:  121 SSNTTQSRNAILVSNRQKGNPLLKHIRNVKWVF-SEIIPDYLLGQSTCALYLSLRYHLLHPDYLYFRIRELQK 192          
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|902192315|gb|KNA12015.1| (hypothetical protein SOVF_129660 [Spinacia oleracea])

HSP 1 Score: 85.8853 bits (211), Expect = 2.134e-16
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0
Query:  119 SHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191
            S N     N I VS RQ+GNP+LK I+NVR+ F   ++PDYVLG  +C +++SLRYHLLH  YL+ R++E+++
Sbjct:   93 STNFVQKTNAIIVSQRQKGNPLLKHIRNVRWNF-AEVIPDYVLGQNSCALYLSLRYHLLHPDYLYFRIREMQK 164          
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|1032291874|gb|OAP06201.1| (UVR7 [Arabidopsis thaliana])

HSP 1 Score: 85.5001 bits (210), Expect = 3.017e-16
Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 0
Query:  121 NLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191
            N +   N I VS RQ+GNP+LK I+NV++ F   I+PDYVLG  +C +++SLRYHLLH  YL+ R++EL++
Sbjct:  118 NTTQNRNAILVSHRQKGNPLLKHIRNVKWVF-SDIIPDYVLGQNSCALYLSLRYHLLHPDYLYFRIRELQK 187          
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|1063709565|ref|NP_001327616.1| (nucleotide repair protein [Arabidopsis thaliana] >gi|1039016177|gb|ANM65666.1| nucleotide repair protein [Arabidopsis thaliana])

HSP 1 Score: 84.3445 bits (207), Expect = 3.334e-16
Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 0
Query:  121 NLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191
            N +   N I VS RQ+GNP+LK I+NV++ F   I+PDYVLG  +C +++SLRYHLLH  YL+ R++EL++
Sbjct:  118 NTTQNRNAILVSHRQKGNPLLKHIRNVKWVF-SDIIPDYVLGQNSCALYLSLRYHLLHPDYLYFRIRELQK 187          
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|727582257|ref|XP_010464040.1| (PREDICTED: DNA excision repair protein ERCC-1 [Camelina sativa])

HSP 1 Score: 85.5001 bits (210), Expect = 3.404e-16
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 0
Query:  121 NLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191
            N S   N I VS RQ+GNP+LK I+NV++ F   I+PDYVLG  +C +++SLRYHLLH  YL+ R++EL++
Sbjct:  116 NTSQTRNAILVSNRQKGNPLLKHIRNVKWVF-SDIIPDYVLGQSSCALYLSLRYHLLHPDYLYFRIRELQK 185          
The following BLAST results are available for this feature:
BLAST of EWM22769.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103373|gb|EWM22769.1|9.265e-136100.00Restriction endonuclease, type II [Nannochloropsis... [more]
gi|585103372|gb|EWM22768.1|4.592e-10995.27Restriction endonuclease, type II [Nannochloropsis... [more]
gi|545358865|ref|XP_005644951.1|1.790e-1761.54DNA repair protein rad10, partial [Coccomyxa subel... [more]
gi|552845437|ref|XP_005851351.1|1.898e-1761.54hypothetical protein CHLNCDRAFT_19196 [Chlorella v... [more]
gi|302782932|ref|XP_002973239.1|1.375e-1656.52hypothetical protein SELMODRAFT_98787, partial [Se... [more]
gi|567202923|ref|XP_006408101.1|1.737e-1652.05hypothetical protein EUTSA_v10020823mg [Eutrema sa... [more]
gi|902192315|gb|KNA12015.1|2.134e-1650.68hypothetical protein SOVF_129660 [Spinacia olerace... [more]
gi|1032291874|gb|OAP06201.1|3.017e-1652.11UVR7 [Arabidopsis thaliana][more]
gi|1063709565|ref|NP_001327616.1|3.334e-1652.11nucleotide repair protein [Arabidopsis thaliana] >... [more]
gi|727582257|ref|XP_010464040.1|3.404e-1653.52PREDICTED: DNA excision repair protein ERCC-1 [Cam... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7929rna7929Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications