EWM22769.1, cds7907 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|585103373|gb|EWM22769.1| (Restriction endonuclease, type II [Nannochloropsis gaditana]) HSP 1 Score: 386.341 bits (991), Expect = 9.265e-136 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0 Query: 1 MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191 MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR Sbjct: 1 MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|585103372|gb|EWM22768.1| (Restriction endonuclease, type II [Nannochloropsis gaditana]) HSP 1 Score: 318.161 bits (814), Expect = 4.592e-109 Identity = 161/169 (95.27%), Postives = 162/169 (95.86%), Query Frame = 0 Query: 1 MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIF 169 MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDY + C F Sbjct: 1 MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPATTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQEAVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYE--PWDLCSF 167
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|545358865|ref|XP_005644951.1| (DNA repair protein rad10, partial [Coccomyxa subellipsoidea C-169] >gi|384246919|gb|EIE20407.1| DNA repair protein rad10, partial [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 86.2705 bits (212), Expect = 1.790e-17 Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 0 Query: 127 NVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191 N + VS RQEGNPVLK I+NVR+QF IVPDY +G TC +F+SLRYHLL Y++ R+KEL+R Sbjct: 1 NAVLVSKRQEGNPVLKHIRNVRWQF-TDIVPDYQMGPNTCALFLSLRYHLLKPTYIYGRIKELQR 64
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|552845437|ref|XP_005851351.1| (hypothetical protein CHLNCDRAFT_19196 [Chlorella variabilis] >gi|307111014|gb|EFN59249.1| hypothetical protein CHLNCDRAFT_19196 [Chlorella variabilis]) HSP 1 Score: 87.8113 bits (216), Expect = 1.898e-17 Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 0 Query: 127 NVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191 N I VS RQEGNPVLK I+NVR+QF IVPD++LG T C+F+SLR+HLL +Y++ R+KEL+R Sbjct: 42 NAIIVSTRQEGNPVLKYIRNVRWQF-GDIVPDFLLGRETACLFLSLRFHLLKPEYIYHRIKELQR 105
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|302782932|ref|XP_002973239.1| (hypothetical protein SELMODRAFT_98787, partial [Selaginella moellendorffii] >gi|300158992|gb|EFJ25613.1| hypothetical protein SELMODRAFT_98787, partial [Selaginella moellendorffii]) HSP 1 Score: 84.3445 bits (207), Expect = 1.375e-16 Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 0 Query: 123 SAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191 S N I VS RQ+GNPVLK I+NVR+ F IVPDYVLG +C +++S+RYHLLH YL+ R++EL++ Sbjct: 13 SQSRNAILVSRRQQGNPVLKFIRNVRWTF-DDIVPDYVLGQSSCALYLSIRYHLLHPDYLYFRIRELQK 80
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|567202923|ref|XP_006408101.1| (hypothetical protein EUTSA_v10020823mg [Eutrema salsugineum] >gi|557109247|gb|ESQ49554.1| hypothetical protein EUTSA_v10020823mg [Eutrema salsugineum]) HSP 1 Score: 86.2705 bits (212), Expect = 1.737e-16 Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 0 Query: 119 SHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191 S N + N I VS RQ+GNP+LK I+NV++ F I+PDY+LG TC +++SLRYHLLH YL+ R++EL++ Sbjct: 121 SSNTTQSRNAILVSNRQKGNPLLKHIRNVKWVF-SEIIPDYLLGQSTCALYLSLRYHLLHPDYLYFRIRELQK 192
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|902192315|gb|KNA12015.1| (hypothetical protein SOVF_129660 [Spinacia oleracea]) HSP 1 Score: 85.8853 bits (211), Expect = 2.134e-16 Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0 Query: 119 SHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191 S N N I VS RQ+GNP+LK I+NVR+ F ++PDYVLG +C +++SLRYHLLH YL+ R++E+++ Sbjct: 93 STNFVQKTNAIIVSQRQKGNPLLKHIRNVRWNF-AEVIPDYVLGQNSCALYLSLRYHLLHPDYLYFRIREMQK 164
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|1032291874|gb|OAP06201.1| (UVR7 [Arabidopsis thaliana]) HSP 1 Score: 85.5001 bits (210), Expect = 3.017e-16 Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 0 Query: 121 NLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191 N + N I VS RQ+GNP+LK I+NV++ F I+PDYVLG +C +++SLRYHLLH YL+ R++EL++ Sbjct: 118 NTTQNRNAILVSHRQKGNPLLKHIRNVKWVF-SDIIPDYVLGQNSCALYLSLRYHLLHPDYLYFRIRELQK 187
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|1063709565|ref|NP_001327616.1| (nucleotide repair protein [Arabidopsis thaliana] >gi|1039016177|gb|ANM65666.1| nucleotide repair protein [Arabidopsis thaliana]) HSP 1 Score: 84.3445 bits (207), Expect = 3.334e-16 Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 0 Query: 121 NLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191 N + N I VS RQ+GNP+LK I+NV++ F I+PDYVLG +C +++SLRYHLLH YL+ R++EL++ Sbjct: 118 NTTQNRNAILVSHRQKGNPLLKHIRNVKWVF-SDIIPDYVLGQNSCALYLSLRYHLLHPDYLYFRIRELQK 187
BLAST of EWM22769.1 vs. NCBI_GenBank
Match: gi|727582257|ref|XP_010464040.1| (PREDICTED: DNA excision repair protein ERCC-1 [Camelina sativa]) HSP 1 Score: 85.5001 bits (210), Expect = 3.404e-16 Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 0 Query: 121 NLSAGVNVISVSPRQEGNPVLKKIKNVRYQFIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR 191 N S N I VS RQ+GNP+LK I+NV++ F I+PDYVLG +C +++SLRYHLLH YL+ R++EL++ Sbjct: 116 NTSQTRNAILVSNRQKGNPLLKHIRNVKWVF-SDIIPDYVLGQSSCALYLSLRYHLLHPDYLYFRIRELQK 185 The following BLAST results are available for this feature:
BLAST of EWM22769.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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