rna7929, rna7929 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7929
Unique Name	rna7929
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1263
Alignment location	KK037247.1:132920..134414 +

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Properties


Property Name	Value
Product	Restriction endonuclease, type II
Orig transcript id	gnl\|cribi\|Naga_100554g5.203.mrna
Orig protein id	gnl\|cribi\|Naga_100554g5.203
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:132920..134414 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100554g5	gene7680	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7929	rna7929-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22769.1	cds7907	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:132920..134414+
coding sequence from alignment at KK037247.1:132920..134414+

mRNA sequence

>rna7929 ID=rna7929|Name=rna7929|organism=Nannochloropsis gaditana|type=mRNA|length=1263bp
CGTGTTGCCCTCCTTTTTGCTGTTTGTGGGCCGTTCTTTTTAGAAACATT
TCACCCGCGTGGCAAGGATTTTTTTTTTTTTGGCCAGTTTCTTGTACTGT
TCTGTCCTGTCTTCTCGCGAGCAAAATCATGTGTTGGCTATCGTGTGTGG
TGTGCTGAATAACAAAGTTTCGCGACGAGAAGCGTCGCCCTAAAAACCTT
CAACACACAGGCACGAGGTCGTCAGACCCAACTGCCCTTTCCCGTCCTTG
CCGTCCACTCTCCTCATGAATTCCATGGCATCTTTCGCATCTCTTCAACC
TGAAGCACACAAATGTCGTAGCAGGGGGCCATTATCGTTTTTCACCAAAG
GGGCTCCCACTGTGGTACCGGGAAGCCCAACTTTCTACATATTCCTTGCT
GACCCCTCGACCAAGACCGCGCTGCACAAACCCCAGCCGCGCGTTTCATC
GCTCGCTTTACCATGAAAAAGGACCACCCCGACTCACGCTCGCGTCCCGC
TCCCTTTCGAATCTCCATCCCGTCGTTGGTGGAGGCCGGGAGCCGGGAGC
AAGCCCAAGTAGGAAGACAGCCTGTCCCTCCTACCGTCCTCCTCCCAAGA
TCCACCCCAGCAACGACCGCGACGGCGCCTCCATACGCACCTTCCACGAA
TGGAAAGGGACCGGGAAGAGTGGAAGACGGTAGAGGTGGAGGGAGGCTTG
GAGAAGGGGGTGGGGGGGCCTCCCTTCCGCAGGCATCAGTACCCTGGGGG
CGTGGCCAAGAGGCAGTATTTGACGCGAAGCACCGAGGAAGCATGACCCT
CCCTATCCTTCCCCCGTCGCATAACCTCAGTGCAGGAGTCAATGTCATCA
GCGTCTCCCCACGCCAAGAAGGCAATCCGGTTTTGAAAAAAATCAAAAAC
GTGCGCTATCAGTTCATCCCTGGCATTGTCCCCGACTATGAGCCTTGGGA
CCTTTGCTCTTTTTCCTGGGGGAGCTCGCCTCAATCTGCCTCTTGACCCC
CCCGTCGTTTTCCTCCTTCTTCCTCGCTCGCCCTTTTCTCCCTCCTTTTC
CAGTGCTGGGCGCGTACACATGCTGTATCTTTATCTCCCTTCGGTACCAC
CTTTTGCATGGCCAATACCTGTTTCAGCGGGTGAAGGAATTGCGACGGTG
AGATAGAAAGGAGGGAGGGAGGAAGGGAGGGAAGGAGGGAGGGAGAGAGA
CGAAAGGTTTCGCATTTGCTGACCTGGCAGCAGTCCCACCACCGCTCCAT
CGTCTCAGAAACC

protein sequence of rna7929

>rna7929-protein ID=rna7929-protein|Name=rna7929|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
MKKDHPDSRSRPAPFRISIPSLVEAGSREQAQVGRQPVPPTVLLPRSTPA
TTATAPPYAPSTNGKGPGRVEDGRGGGRLGEGGGGASLPQASVPWGRGQE
AVFDAKHRGSMTLPILPPSHNLSAGVNVISVSPRQEGNPVLKKIKNVRYQ
FIPGIVPDYVLGAYTCCIFISLRYHLLHGQYLFQRVKELRR

mRNA from alignment at KK037247.1:132920..134414+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7929 ID=rna7929|Name=rna7929|organism=Nannochloropsis gaditana|type=mRNA|length=1495bp|location=Sequence derived from alignment at KK037247.1:132920..134414+ (Nannochloropsis gaditana)
CGTGTTGCCCTCCTTTTTGCTGTTTGTGGGCCGTTCTTTTTAGAAACATT
TCACCCGCGTGGCAaggatttttttttttttggcCAGTTTCTTGTACTGT
TCTGTCCTGTCTTCTCGCGAGCAAAATCATGTGTTGGCTATCGTGTGTGG
TGTGCTGAATAACAAAGTTTCGCGACGAGAAGCGTCGCCCTAAAAACCTT
CAACACACAGGCACGAGGTCGTCAGACCCAACTGccctttcccgtccttg
ccgTCCACTCTCCTCATGAATTCCATGGCATCTTTCGCATCTCTTCAACC
TGAAGCACACAAATGTCGTAGCAGGGGGCCATTATCGTTTTTCACCAAAG
GGGCTCCCACTGTGGTACCGGGAAGCCCAACTTTCTACATATTCCTTGCT
GACCCCTCGACCAAGACCGCGCTGCACAAACCCCAGCCGCGCGTTTCATC
GCTCGCTTTACCATGAAAAAGGACCACCCCGACTCACGCTCGCGTCCCGC
TCCCTTTCGAATCTCCATCCCGTCGTtggtggaggccgggagCCGGGAGC
AAGCCCAAGTAGGAAGACAGCCTGTCCCTCctaccgtcctcctcccaaga
TCCACCCCAGCAACGACCGCGACGGCGCCTCCATACGCACCTTCCACGAA
TGGAAAGGGACCGGGAAGAGTGGAAGACGgtagaggtggagggaggcttg
gagaagggggtgggggggccTCCCTTCCGCAGGCATCAGTACCCTGGGGG
CGTGGCCAAGAGGCAGTATTTGACGCGAAGCACCGAGGAAGCATGACCCT
CCCTATCCTTCCCCCGTCGCATAACCTCAGTGCAGGTACGTCCATGCTAT
GTCCGCCTTTGCTTTTTCGTGTAATTCTTGCATGGAAAGGCCACTCTCCT
CGTCGCGTCTTTGCCCCGTAAGCtcaggcctccctccctccctttcacac
atgcaccgccctccctcgtcctcgcccttaCAGGAGTCAATGTCATCAGC
GTCTCCCCACGCCAAGAAGGCAATCCGGttttgaaaaaaatcaaaaacgT
GCGCTATCAGTTCATCCCTGGCATTGTCCCCGACTATGGTCAGTGCCATT
cgtcctttgccctctctccctctctcgatTCCCACCTTGATCCCTCCTAt
tgtttcccctcctcgtcaccaGAGCCTTGGGACctttgctctttttcctg
ggGGAGCTCGCCTCAATCTGCCTCTTGACCCCCCcgtcgttttcctcctt
cttcctcgctcgcccttttctccctccttttccagtgCTGGGCGCGTACA
CATGCTGTATCTTTATCTCCCTTCGGTACCACCTTTTGCATGGCCAATAC
CTGTTTCAGCGGGTGAAGGAATTGCGACGGTGAGatagaaaggagggagg
gaggaagggagggaaggagggagggagagagacgaaAGGTTTCGCATTTG
CTGACCTGGCAGCAGTCCCACCACCGCTCCATCGTCTCAGAAACC

Coding sequence (CDS) from alignment at KK037247.1:132920..134414+

>rna7929 ID=rna7929|Name=rna7929|organism=Nannochloropsis gaditana|type=CDS|length=1728bp|location=Sequence derived from alignment at KK037247.1:132920..134414+ (Nannochloropsis gaditana)
ATGAAAAAGGACCACCCCGACTCACGCTCGCGTCCCGCTCCCTTTCGAAT
CTCCATCCCGTCGTtggtggaggccgggagCCGGGAGCAAGCCCAAGTAG
GAAGACAGCCTGTCCCTCctaccgtcctcctcccaagaTCCACCCCAGCA
ACGACCGCGACGGCGCCTCCATACGCACCTTCCACGAATGGAAAGGGACC
GGGAAGAGTGGAAGACGgtagaggtggagggaggcttggagaagggggtg
ggggggccTCCCTTCCGCAGGCATCAGTACCCTGGGGGCGTGGCCAAGAG
GCAGTATTTGACGCGAAGCACCGAGGAAGCATGACCCTCCCTATCCTTCC
CCCGTCGCATAACCTCAGTGCAGGAGTCAATGTCATCAGCGTCTCCCCAC
GCCAAGAAGGCAATCCGGttttgaaaaaaatcaaaaacgTGCGCTATCAG
TTCATCCCTGGCATTGTCCCCGACTATGtgCTGGGCGCGTACACATGCTG
TATCTTTATCTCCCTTCGGTACCACCTTTTGCATGGCCAATACCTGTTTC
AGCGGGTGAAGGAATTGCGACGGTGAATGAAAAAGGACCACCCCGACTCA
CGCTCGCGTCCCGCTCCCTTTCGAATCTCCATCCCGTCGTtggtggaggc
cgggagCCGGGAGCAAGCCCAAGTAGGAAGACAGCCTGTCCCTCctaccg
tcctcctcccaagaTCCACCCCAGCAACGACCGCGACGGCGCCTCCATAC
GCACCTTCCACGAATGGAAAGGGACCGGGAAGAGTGGAAGACGgtagagg
tggagggaggcttggagaagggggtgggggggccTCCCTTCCGCAGGCAT
CAGTACCCTGGGGGCGTGGCCAAGAGGCAGTATTTGACGCGAAGCACCGA
GGAAGCATGACCCTCCCTATCCTTCCCCCGTCGCATAACCTCAGTGCAGG
AGTCAATGTCATCAGCGTCTCCCCACGCCAAGAAGGCAATCCGGttttga
aaaaaatcaaaaacgTGCGCTATCAGTTCATCCCTGGCATTGTCCCCGAC
TATGtgCTGGGCGCGTACACATGCTGTATCTTTATCTCCCTTCGGTACCA
CCTTTTGCATGGCCAATACCTGTTTCAGCGGGTGAAGGAATTGCGACGGT
GAATGAAAAAGGACCACCCCGACTCACGCTCGCGTCCCGCTCCCTTTCGA
ATCTCCATCCCGTCGTtggtggaggccgggagCCGGGAGCAAGCCCAAGT
AGGAAGACAGCCTGTCCCTCctaccgtcctcctcccaagaTCCACCCCAG
CAACGACCGCGACGGCGCCTCCATACGCACCTTCCACGAATGGAAAGGGA
CCGGGAAGAGTGGAAGACGgtagaggtggagggaggcttggagaaggggg
tgggggggccTCCCTTCCGCAGGCATCAGTACCCTGGGGGCGTGGCCAAG
AGGCAGTATTTGACGCGAAGCACCGAGGAAGCATGACCCTCCCTATCCTT
CCCCCGTCGCATAACCTCAGTGCAGGAGTCAATGTCATCAGCGTCTCCCC
ACGCCAAGAAGGCAATCCGGttttgaaaaaaatcaaaaacgTGCGCTATC
AGTTCATCCCTGGCATTGTCCCCGACTATGtgCTGGGCGCGTACACATGC
TGTATCTTTATCTCCCTTCGGTACCACCTTTTGCATGGCCAATACCTGTT
TCAGCGGGTGAAGGAATTGCGACGGTGA

Synonyms

Publications