rna7918, rna7918 (mRNA) Nannochloropsis gaditana

Overview
Namerna7918
Unique Namerna7918
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1198
Alignment locationKK037247.1:90650..91606 +

Link to JBrowse

Properties
Property NameValue
ProductRibonuclease Zc3h12a-like protein
Orig transcript idgnl|cribi|Naga_101279g2.9612.mrna
Orig protein idgnl|cribi|Naga_101279g2.9612
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:90650..91606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101279g2gene7669Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7918rna7918-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22776.1cds7896Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7918 ID=rna7918|Name=rna7918|organism=Nannochloropsis gaditana|type=mRNA|length=1198bp
GACTCTTTCCACACAAGAGGATCCTTGACAACACCAATTCGACGCCATTT
TCTTGTGACTGCAGCTTTGCATCCCGGTATTGTGTCTGCCCGAGTGATAG
AGCGGCCTTCAATAAGCGGTAGGAGGAGCTACTTTCCTTCGTCCCCACTC
CACAGTCCAAGCTGTCACCGCCCACTCATCCGATACCGTGGTTAACCAGC
TGCAACACCAGAGTCTGCCACGCTGTGTGAAGGAAAGCCAGCCCACGTAT
CGAGGAAACAAAACGTCAAAATGAGGCTTGTCCAAGCCGGGCAGGGAGGC
TGCTTGTGCTGTGACGTTGGGCTCAGCTCCCCTTCGACCCAAAAGGGTTA
GGACCTCGTGCGTGAGACGTGGTGGTACGCGACAGGCGGTGTTTGAAAGG
GATGGCTGCACTCTTTCGACGGCATGAATGGGGATTTTGAAAGAAAACTC
AAAGACTGTGCTTTAAAGTTTGTTTATGGGCTAGTGACAAACTCCCCCTC
CTCTTTCCAAGCGGGCTCCAGGTCAAAATGACATCCTAATCGACCGATAT
GCCCCTCATTTAACACCCAGGTTGCCCCTGTGCCCTAGACGGCGTCCCAA
AGAACCATCTGTGGTGTCGCGACCACAAGGAACGGAGTAGAGGGAGGGCA
TTCCAAGTGATGAGTGTTCCTGCTCCTTCCTCCCCCCCTCCGTCGTCCTC
CTCCGGCTCCCGCGCCTCACACTCCGAAGATAACAGCATGGTGGTCGTCC
CCTCCAGAGTGCTCTTTACCACCTCGCTGGGAAATGTGGTGCATGCGGAG
GAAGGGGAAGGAGGTGAAGGCCACTCGGGAGGGCGCAAGCAAAGGTACCG
CCGCAAGGGGTATACGATCACGGAAGAAGATCTGGATGGAAACGTGGTGC
GAGTGACCCGCGCCCCGCCCGCACGGAAGCGGAGACGGTCGAACACCGGG
AAGGAAGAGGAAACGACCATGGTGTGGACGGCCAGGGAAGGGGCGGAAGA
GACTACGGGAGCGGAGCCCTCTCACCTTCATGGGCAATGCGAGCTCGGTG
ATGAGGGACAGGGGGGCGATCGGGGAGCATGCCTGAGACAACTGCACCCA
GAAGAAGGACGATTCCAGCAGCAGGAAGGATTGCACGTCCTGGCATGGTC
CTTTCACAATCCACAGCGCACCCAGCAGCCAGGCGTGCAAGTTCCCCT
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protein sequence of rna7918

>rna7918-protein ID=rna7918-protein|Name=rna7918|organism=Nannochloropsis gaditana|type=polypeptide|length=172bp
MHDAPEDAVTTSGPAPLNARIDASRIASAISYFRGRSIGVAAFIPAYALR
RKGPGGGRAGGREGGGGNVMMQTEAQESLQSMVDRRWLATIPPTDNDDLY
ILEFAREKNALVLSNDCFRDHCARDPSLRPFLQRNRVSYTFFANDFLPNP
GHVGLQALKSRRNEEQKEIGRH
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mRNA from alignment at KK037247.1:90650..91606+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7918 ID=rna7918|Name=rna7918|organism=Nannochloropsis gaditana|type=mRNA|length=957bp|location=Sequence derived from alignment at KK037247.1:90650..91606+ (Nannochloropsis gaditana)
TGCCAACGTCGGCATGCATGACGCCCCAGAGGACGCGGTGACCACgtccg
gccccgcccccctcaaCGCCCGGATCGACGCTAGCCGTATCGCCTCGGCC
ATTTCCTATTTCCGTGGTCGGAGCATTGGTGTCGCCGCCTTCATTCCCGC
CTATGCGCTGCGACGAAAAGgtcccgggggagggagggcgggagggcggg
aaggcgggggtggaAATGTGATGATGCAAACAGAGGCCCAGGAATCCCTG
CAGTCCATGGTAGATAGACGGTGGTTGGCGACCATCCCGCCCACGGATAA
CGACGACCTTTACATCTTGGAGTTCGCGCGGGAAAAGGTACGGGAcagcg
ggggggaagcatgggtggagggagggaggggagaagggtgggagagagaa
agggcggACAGGAAGGGCGACATCCTCTGTGTGTCGCTCagctccctgcc
ttccaaCGTCACCCGCACACTCTCATCTTGGTTTTTGAAGTGctcctttt
taaaaaaaaggtCCTTCTTACGTTCAGGCCCCCATCCTCGTGTTTACTTG
CCCTTGTTGACTCACCCTTGTCCCCGTTTCCCTCGACCAGaacgccctcg
tcctctcgaATGACTGCTTTCGAGACCATTGCGCCCGGGACCCGTCCTTG
CGTCCATTCCTGCAACGCAACCGGGTGTCTTACACGTTCTTTGCGAACGA
TTTTTTGCCCAATCCGGGGCATGTGGGCTTGCAGGCTCTGAAATCGAGAA
GGAATGAGGAACAGAAGGAGATCGGAAGGCACTAGACTAGGTGGGAATAC
TGAGGAGTGTGGAGCGTTGGTTGGGGAAAACTCTGATAATATGCTTGACG
ACCCATGTTGAAAGGTGGGGAGTGAAGCGTCCGAAAAATGCAATTGCAGC
TTAATGTAGATAGTTCAGTCTTTACACTGTGAAGTAAGCAAGCGAATTAT
GTATTTT
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Coding sequence (CDS) from alignment at KK037247.1:90650..91606+

>rna7918 ID=rna7918|Name=rna7918|organism=Nannochloropsis gaditana|type=CDS|length=1038bp|location=Sequence derived from alignment at KK037247.1:90650..91606+ (Nannochloropsis gaditana)
ATGCATGACGCCCCAGAGGACGCGGTGACCACgtccggccccgcccccct
caaCGCCCGGATCGACGCTAGCCGTATCGCCTCGGCCATTTCCTATTTCC
GTGGTCGGAGCATTGGTGTCGCCGCCTTCATTCCCGCCTATGCGCTGCGA
CGAAAAGgtcccgggggagggagggcgggagggcgggaaggcgggggtgg
aAATGTGATGATGCAAACAGAGGCCCAGGAATCCCTGCAGTCCATGGTAG
ATAGACGGTGGTTGGCGACCATCCCGCCCACGGATAACGACGACCTTTAC
ATCTTGGAGTTCGCGCGGGAAAAGaacgccctcgtcctctcgaATGACTG
CTTTCGAGACCATTGCGCCCGGGACCCGTCCTTGCGTCCATTCCTGCAAC
GCAACCGGGTGTCTTACACGTTCTTTGCGAACGATTTTTTGCCCAATCCG
GGGCATGTGGGCTTGCAGGCTCTGAAATCGAGAAGGAATGAGGAACAGAA
GGAGATCGGAAGGCACTAGATGCATGACGCCCCAGAGGACGCGGTGACCA
CgtccggccccgcccccctcaaCGCCCGGATCGACGCTAGCCGTATCGCC
TCGGCCATTTCCTATTTCCGTGGTCGGAGCATTGGTGTCGCCGCCTTCAT
TCCCGCCTATGCGCTGCGACGAAAAGgtcccgggggagggagggcgggag
ggcgggaaggcgggggtggaAATGTGATGATGCAAACAGAGGCCCAGGAA
TCCCTGCAGTCCATGGTAGATAGACGGTGGTTGGCGACCATCCCGCCCAC
GGATAACGACGACCTTTACATCTTGGAGTTCGCGCGGGAAAAGaacgccc
tcgtcctctcgaATGACTGCTTTCGAGACCATTGCGCCCGGGACCCGTCC
TTGCGTCCATTCCTGCAACGCAACCGGGTGTCTTACACGTTCTTTGCGAA
CGATTTTTTGCCCAATCCGGGGCATGTGGGCTTGCAGGCTCTGAAATCGA
GAAGGAATGAGGAACAGAAGGAGATCGGAAGGCACTAG
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Synonyms
Publications