EWM22776.1, cds7896 (CDS) Nannochloropsis gaditana

Overview
NameEWM22776.1
Unique Namecds7896
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:90663..90986 +
Alignment locationKK037247.1:91240..91434 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22776.1
ProductRibonuclease Zc3h12a-like protein
Orig transcript idgnl|cribi|Naga_101279g2.9612.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:90663..90986 +
KK037247.1supercontigKK037247.1:91240..91434 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR021869RNase_Zc3h12
Homology
BLAST of EWM22776.1 vs. NCBI_GenBank
Match: gi|585103384|gb|EWM22776.1| (Ribonuclease Zc3h12a-like protein [Nannochloropsis gaditana])

HSP 1 Score: 355.91 bits (912), Expect = 2.173e-124
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0
Query:    1 MHDAPEDAVTTSGPAPLNARIDASRIASAISYFRGRSIGVAAFIPAYALRRKGPGGGRAGGREGGGGNVMMQTEAQESLQSMVDRRWLATIPPTDNDDLYILEFAREKNALVLSNDCFRDHCARDPSLRPFLQRNRVSYTFFANDFLPNPGHVGLQALKSRRNEEQKEIGRH 172
            MHDAPEDAVTTSGPAPLNARIDASRIASAISYFRGRSIGVAAFIPAYALRRKGPGGGRAGGREGGGGNVMMQTEAQESLQSMVDRRWLATIPPTDNDDLYILEFAREKNALVLSNDCFRDHCARDPSLRPFLQRNRVSYTFFANDFLPNPGHVGLQALKSRRNEEQKEIGRH
Sbjct:    1 MHDAPEDAVTTSGPAPLNARIDASRIASAISYFRGRSIGVAAFIPAYALRRKGPGGGRAGGREGGGGNVMMQTEAQESLQSMVDRRWLATIPPTDNDDLYILEFAREKNALVLSNDCFRDHCARDPSLRPFLQRNRVSYTFFANDFLPNPGHVGLQALKSRRNEEQKEIGRH 172          
BLAST of EWM22776.1 vs. NCBI_GenBank
Match: gi|470482726|ref|XP_004343639.1| (hypothetical protein ACA1_098840 [Acanthamoeba castellanii str. Neff] >gi|440799463|gb|ELR20508.1| hypothetical protein ACA1_098840 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 84.3445 bits (207), Expect = 6.554e-16
Identity = 49/154 (31.82%), Postives = 77/154 (50.00%), Query Frame = 0
Query:   18 NARIDASRIASAISYFRGRSIGVAAFIPAYALRRKGPGGGRAGGREGGGGNVMMQTEAQESLQSMVDRRWLATIPPTDNDDLYILEFAREKNALVLSNDCFRDHCARDPS-----LRPFLQRNRVSYTFFANDFLPNPGHVGLQALKSRRNEEQ 166
            N ++    I  AI Y++ +   V AFIP + L RK P       +E   G  M   +  E L  +VD   +   PP D DD Y +E+++   A +++ND + DH AR P      +  +L+ + +S+TF  N+FLPNP    L A+   +  E+
Sbjct:  624 NKKVSVRGIQLAIQYWQKKGHQVIAFIPEHYLHRKAP----PPDKEQTLGEYMPMADNTELLAQLVDDGSVVLCPPQDYDDSYCIEYSKRHGAYIVTNDRYWDHIARQPEDQRAGVTRWLREHCISFTFAKNEFLPNPDFAFLPAVPQAQGGEK 773          
BLAST of EWM22776.1 vs. NCBI_GenBank
Match: gi|813148964|ref|XP_012200129.1| (hypothetical protein SPRG_19902 [Saprolegnia parasitica CBS 223.65] >gi|641535318|gb|KDO29236.1| hypothetical protein SPRG_19902 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 76.2554 bits (186), Expect = 4.980e-13
Identity = 47/144 (32.64%), Postives = 72/144 (50.00%), Query Frame = 0
Query:   17 LNARIDASRIASAISYFRGRSIGVAAFIPAYALRRKGPGGGRAGGREGGGGNVMMQTEAQES---LQSMVDRRWLATIPPTDNDDLYILEFAREKNALVLSNDCFRDHC-------ARDPSLRPFLQRNRVSYTFFANDFLPNP 150
            LNAR   + I     Y+  R   V AF+P Y LR +  G   A  R  G G  +  ++  +    LQSMV    +   PP D DD Y +++A   +  V++ND FRDH         +  ++R +L  + +S+T+  ++FLPNP
Sbjct:  740 LNARFSCAGIRLVFDYYLARGHKVLAFLPDYLLRYESVG---AQKRMAGAGYDVSPSKLPDDVGLLQSMVLEGTVIATPPQDYDDSYCIQYAGRHDGCVVTNDLFRDHVDGLQGTGQQKAAMRQWLSAHCISFTWVGDEFLPNP 880          
BLAST of EWM22776.1 vs. NCBI_GenBank
Match: gi|673031266|ref|XP_008869594.1| (hypothetical protein H310_06350 [Aphanomyces invadans] >gi|574474745|gb|ETW01746.1| hypothetical protein H310_06350 [Aphanomyces invadans])

HSP 1 Score: 76.2554 bits (186), Expect = 5.441e-13
Identity = 42/140 (30.00%), Postives = 70/140 (50.00%), Query Frame = 0
Query:   17 LNARIDASRIASAISYFRGRSIGVAAFIPAYALRRKGPGGGRAGGREGGGGNVMMQTEAQESLQSMVDRRWLATIPPTDNDDLYILEFAREKNALVLSNDCFRDHC------ARDPSLRPFLQRNRVSYTFFANDFLPNP 150
            LNA+     I   I ++  R   V AF+P Y L+ +  G  +     G   +     +    LQ+MV    +   PP D DD Y +++A   +  V++ND FRDH        +  ++R +L+ +R+S+T+  ++FLPNP
Sbjct:  817 LNAKFSCRGIRLVIDHYIARGHKVIAFLPDYLLKYETVGAQKRMANVGYDVSPTKLPDDVTLLQAMVLEGLIIATPPQDYDDSYCIQYAGTHDGCVVTNDLFRDHLDNIKPSQKRSAMREWLKAHRISFTWVGDEFLPNP 956          
BLAST of EWM22776.1 vs. NCBI_GenBank
Match: gi|669154642|ref|XP_008612883.1| (hypothetical protein SDRG_08764 [Saprolegnia diclina VS20] >gi|530735418|gb|EQC33660.1| hypothetical protein SDRG_08764 [Saprolegnia diclina VS20])

HSP 1 Score: 75.8702 bits (185), Expect = 7.054e-13
Identity = 47/144 (32.64%), Postives = 71/144 (49.31%), Query Frame = 0
Query:   17 LNARIDASRIASAISYFRGRSIGVAAFIPAYALRRKGPGGGRAGGREGGGGNVMMQTEAQES---LQSMVDRRWLATIPPTDNDDLYILEFAREKNALVLSNDCFRDHC-------ARDPSLRPFLQRNRVSYTFFANDFLPNP 150
            LNAR   + I     Y+  R   V AF+P Y LR +  G   A  R  G G  +  ++  +    LQSMV    +   PP D DD Y +++A   +  V++ND FRDH            ++R +L  + +S+T+  ++FLPNP
Sbjct:  754 LNARFSCAGIRLVFDYYMARGHKVLAFLPDYLLRYESVG---AQKRMAGAGYDVSPSKLPDDVGLLQSMVLEGTVIATPPQDYDDSYCIQYAGRHDGCVVTNDLFRDHVDGLQGNGQTKAAMRQWLSAHCISFTWVGDEFLPNP 894          
BLAST of EWM22776.1 vs. NCBI_GenBank
Match: gi|1069834273|gb|OEH73738.1| (ribonuclease related [Cyclospora cayetanensis])

HSP 1 Score: 74.3294 bits (181), Expect = 2.275e-12
Identity = 41/131 (31.30%), Postives = 66/131 (50.38%), Query Frame = 0
Query:   26 IASAISYFRGRSIGVAAFIPAYALRRKGPGGGRAGGREGGGGNVMMQTEAQESLQSMVDRRWLATIPPTDNDDLYILEFAREKNALVLSNDCFRDHCARDP------SLRPFLQRNRVSYTFFANDFLPNP 150
            I S ++Y++ R   V  F+P Y L        R   R     N     ++ E+L+ +     L + PP D DD Y +++A   N  +++ND +RD   R P      +LR +L+R+ +S+TF   +FLPNP
Sbjct: 1090 ILSVLAYYKDRGYKVRVFVPDYVLSYSSVAEARRQERAQLPVNQARLPDSVEALKKLQREGTLISTPPQDYDDSYCIKYALMNNGCIVTNDLYRDITNRVPNKSQQTALRAWLKRHVISFTFVDGEFLPNP 1220          
BLAST of EWM22776.1 vs. NCBI_GenBank
Match: gi|1173941730|gb|OQR90842.1| (hypothetical protein THRCLA_09187 [Thraustotheca clavata])

HSP 1 Score: 74.3294 bits (181), Expect = 2.421e-12
Identity = 45/151 (29.80%), Postives = 68/151 (45.03%), Query Frame = 0
Query:    7 DAVTTSGPAPLNARIDASRIASAISYFRGRSIGVAAFIPAYALRRKGPGGGRAGGREGGGGNVMMQTEAQESLQSMVDRRWLATIPPTDNDDLYILEFAREKNALVLSNDCFRDHC-------ARDPSLRPFLQRNRVSYTFFANDFLPNP 150
            DA   +    LN R     I     Y+  R   V AF+P Y L  +  G  +     G   N     +    LQSMV    +   PP D DD Y +++A   +  V++ND FRDH         +  ++R +L  +R+S+T+  ++F PNP
Sbjct: 1035 DAANVAMRHGLNKRFSCKGIRLVFDYYLARGHKVIAFLPDYLLTYESVGAQKRMAGIGFDVNPSKLPDDVALLQSMVLEGTIIATPPQDYDDSYCIQYAGHHDGCVVTNDLFRDHVEGMNASGQKKAAMRQWLAAHRISFTWVGDEFFPNP 1185          
BLAST of EWM22776.1 vs. NCBI_GenBank
Match: gi|1173944886|gb|OQR93572.1| (dnaJ-like subfamily C member 25-like [Achlya hypogyna])

HSP 1 Score: 73.1738 bits (178), Expect = 5.395e-12
Identity = 38/140 (27.14%), Postives = 69/140 (49.29%), Query Frame = 0
Query:   21 IDASRIASAISYFRGRSIGVAAFIPAYALRRKGPGGGRAGGREGGGGNVMMQTEAQESL-QSMVDRRWLATIPPTDNDDLYILEFAREKNALVLSNDCFRDHCARDPSL------RPFLQRNRVSYTFFANDFLPNPGHV 153
            +   R+ SA+ +F    + V AF P Y +R K P       R        M    + +L Q++VD+  +   PP  +DD +++++A + +  ++SND FRDH A+            +++   +++TF   +FLPN  H+
Sbjct:   21 VRVQRLVSALDHFEALGVRVIAFAPGYWIRSKAPT---PRTRPLSTVETEMDQRTEMALVQALVDQERVVLTPPQAHDDFFLIDYAMKHDGFIVSNDMFRDHVAKKMQFHGRNLTEAWIRSRCITFTFVGTEFLPNAEHM 157          
BLAST of EWM22776.1 vs. NCBI_GenBank
Match: gi|1173959147|gb|OQS05412.1| (hypothetical protein THRCLA_02458 [Thraustotheca clavata])

HSP 1 Score: 71.633 bits (174), Expect = 1.429e-11
Identity = 43/146 (29.45%), Postives = 72/146 (49.32%), Query Frame = 0
Query:   21 IDASRIASAISYFRGRSIGVAAFIPAYALRRKGPGGGRAGGREGGGGNVMMQTEAQESLQSMVDRRWLATIPPTDNDDLYILEFAREKNALVLSNDCFRDHCARDPSL------RPFLQRNRVSYTFFANDFLPNPGHVGLQALKS 160
            I   R+ +AI +F    + V AF P+Y LR K          +      MMQ       Q +VD   +   PP  +DDL+I+++A + +  V++ND FRDH A             +++ + +++TF  ++FLP+  H+  Q L+S
Sbjct:   21 IRLERLHNAIKHFETLGVRVIAFAPSYWLRSKNLTPRTRSQFQEIDQCEMMQ------FQLLVDDEKVVLTPPQAHDDLFIIDYAMKHDGYVVTNDMFRDHVANKMEFHGNELTEIWVKTHCITFTFVGSEFLPSAQHI--QHLRS 158          
BLAST of EWM22776.1 vs. NCBI_GenBank
Match: gi|916419984|ref|XP_013231223.1| (Ribonuclease ZC3H12A, related [Eimeria tenella] >gi|557141990|emb|CDJ40473.1| Ribonuclease ZC3H12A, related [Eimeria tenella])

HSP 1 Score: 71.2478 bits (173), Expect = 2.469e-11
Identity = 39/131 (29.77%), Postives = 63/131 (48.09%), Query Frame = 0
Query:   26 IASAISYFRGRSIGVAAFIPAYALRRKGPGGGRAGGREGGGGNVMMQTEAQESLQSMVDRRWLATIPPTDNDDLYILEFAREKNALVLSNDCFRDHCAR------DPSLRPFLQRNRVSYTFFANDFLPNP 150
            I +A+ Y+R R   V  F+P Y L        R   R     +     +  E L+ +     L   P  D DDLY + +A  +   +++ND +RD C+R        +LR +L+R+ +++TF   DF+PNP
Sbjct: 1290 ILAALDYYRERGYKVRVFVPEYVLSYNSYSDARRQERAQMPVSYTRMPDCIEVLRKLHREGILICTPSQDYDDLYCIRYALMRGGCIITNDMYRDICSRVADKTQQAALRLWLKRHIITFTFVDGDFIPNP 1420          
The following BLAST results are available for this feature:
BLAST of EWM22776.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103384|gb|EWM22776.1|2.173e-124100.00Ribonuclease Zc3h12a-like protein [Nannochloropsis... [more]
gi|470482726|ref|XP_004343639.1|6.554e-1631.82hypothetical protein ACA1_098840 [Acanthamoeba cas... [more]
gi|813148964|ref|XP_012200129.1|4.980e-1332.64hypothetical protein SPRG_19902 [Saprolegnia paras... [more]
gi|673031266|ref|XP_008869594.1|5.441e-1330.00hypothetical protein H310_06350 [Aphanomyces invad... [more]
gi|669154642|ref|XP_008612883.1|7.054e-1332.64hypothetical protein SDRG_08764 [Saprolegnia dicli... [more]
gi|1069834273|gb|OEH73738.1|2.275e-1231.30ribonuclease related [Cyclospora cayetanensis][more]
gi|1173941730|gb|OQR90842.1|2.421e-1229.80hypothetical protein THRCLA_09187 [Thraustotheca c... [more]
gi|1173944886|gb|OQR93572.1|5.395e-1227.14dnaJ-like subfamily C member 25-like [Achlya hypog... [more]
gi|1173959147|gb|OQS05412.1|1.429e-1129.45hypothetical protein THRCLA_02458 [Thraustotheca c... [more]
gi|916419984|ref|XP_013231223.1|2.469e-1129.77Ribonuclease ZC3H12A, related [Eimeria tenella] >g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7918rna7918Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications