EWM22778.1, cds7894 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22778.1
Unique Name	cds7894
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037247.1:88867..89030 -
Alignment location	KK037247.1:88227..88635 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22778.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101581g2.2306.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:88867..89030 -
KK037247.1	supercontig	KK037247.1:88227..88635 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM22778.1 vs. NCBI_GenBank
Match: gi|585103387|gb|EWM22778.1| (hypothetical protein Naga_101581g2 [Nannochloropsis gaditana])

HSP 1 Score: 384.415 bits (986), Expect = 4.500e-135
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0

Query:    1 MQSCSHKKMASNWCCQGSSCVERVQEQAMAAKTKKGTRVFHNRASPRMLLCAWLSFFSLLLHQPLPTSAFLHPFPSLPSRPCPPPLPPPPLCLSPFAPFPTLGAIPPVVLTEGETERSSDLLAELDELAGEGKYQEALALVGSGGHVVGPPHYHKVRGSGAKPFPSSTYMYGSECLAFPSAYGRRHGLES 190
            MQSCSHKKMASNWCCQGSSCVERVQEQAMAAKTKKGTRVFHNRASPRMLLCAWLSFFSLLLHQPLPTSAFLHPFPSLPSRPCPPPLPPPPLCLSPFAPFPTLGAIPPVVLTEGETERSSDLLAELDELAGEGKYQEALALVGSGGHVVGPPHYHKVRGSGAKPFPSSTYMYGSECLAFPSAYGRRHGLES
Sbjct:    1 MQSCSHKKMASNWCCQGSSCVERVQEQAMAAKTKKGTRVFHNRASPRMLLCAWLSFFSLLLHQPLPTSAFLHPFPSLPSRPCPPPLPPPPLCLSPFAPFPTLGAIPPVVLTEGETERSSDLLAELDELAGEGKYQEALALVGSGGHVVGPPHYHKVRGSGAKPFPSSTYMYGSECLAFPSAYGRRHGLES 190

The following BLAST results are available for this feature:

BLAST of EWM22778.1 vs. NCBI_GenBank

BLAST of EWM22778.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585103387\|gb\|EWM22778.1\|	4.500e-135	100.00	hypothetical protein Naga_101581g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7916	rna7916	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications