rna7916, rna7916 (mRNA) Nannochloropsis gaditana

Overview
Namerna7916
Unique Namerna7916
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length899
Alignment locationKK037247.1:88227..89562 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101581g2.2306.mrna
Orig protein idgnl|cribi|Naga_101581g2.2306
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:88227..89562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101581g2gene7667Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7916rna7916-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22778.1cds7894Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7916 ID=rna7916|Name=rna7916|organism=Nannochloropsis gaditana|type=mRNA|length=899bp
TATCCGACTGGAACTCTCCGAAAAGAAGTGCGTTGACTCCGCCCGTGGAA
ACATGCACGACAACAATGGATGGAAACCTTATGTACAAGAAAGGGGTGTG
TGTGGCGGTGTGATGGCCTTTTTATATGAAGCTATTTAAGCAAAACGACC
GTACGGGGTTGGACGGATTTCGACATCAACCAGGAAATGCCAGGCTCTTG
ATAGCACATCCTCTTACTTTTGACCTGCTCAACCGTTCGCCCTGTCATTT
CGATTTGTTCGTCATTGTGTATGCTCTAAATTTCATCAATCAGCGGTCTT
GGTCGATTCCGAGGGTTTGTCAGCTCCTTCTGGCTTCTACTGGGGATTTT
CTCCCCTCATACGCTTGGAAGGCATCCTTACGCAGTGCGATTTTTTCGTA
CACCTGCGCGTGAGCCAAAAAGCCTGACTGTAGTTTTCTATGCCCATTCT
TTTCCAAAAGGACGTCACATTCATGCCACGGCCACGCGTCTTCTTCCAGG
GTGATTACGAGCTTCTTTCTTCCCAGTTCGCTGGTCTGGTGGTGGCGGCC
AAATCGGGGTTATTCCAGTCCCGTGGCATAGACCTGGTATTGCGTGGAAA
AGTCCGTCCCGGATCCGAAGCAGACGTGGTCGCGGGCATTCAGGAAGCCG
TCGGAGATCGGGGAAACCTTGCCTTGGGGTGTGCAGAGCAAAACATCGTC
GTCCCCGCCCAGGCTCATGGCGCCCCTGTTCAGGTTGTGAGCGCCATGTA
TCACAAAAGTCCCCTCGGTCTTGGCCTCCTCCCTACCTCCAGAATCACCA
GCCTCAAAGAGCTGGCGCAAAGGCAGATGAGGGTTGGGATGCTTGCAGAT
TCCTTAAGTCTTGCACAAAGACTCCTCCATCAGGCGGTGGGGAGTAGCA
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protein sequence of rna7916

>rna7916-protein ID=rna7916-protein|Name=rna7916|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MQSCSHKKMASNWCCQGSSCVERVQEQAMAAKTKKGTRVFHNRASPRMLL
CAWLSFFSLLLHQPLPTSAFLHPFPSLPSRPCPPPLPPPPLCLSPFAPFP
TLGAIPPVVLTEGETERSSDLLAELDELAGEGKYQEALALVGSGGHVVGP
PHYHKVRGSGAKPFPSSTYMYGSECLAFPSAYGRRHGLES
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mRNA from alignment at KK037247.1:88227..89562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7916 ID=rna7916|Name=rna7916|organism=Nannochloropsis gaditana|type=mRNA|length=1336bp|location=Sequence derived from alignment at KK037247.1:88227..89562- (Nannochloropsis gaditana)
TTCTTTGGGACGCCGTCTAGGGCACAGGGGCAACCTGGGTGTTAAATGAG
GGGCATATCGGTCGATTAGGATGTCATTTTGACCTGGAGCCCGCTTGGAA
AGAGGAGGGGGAGTTTGTCACTAGCCCATAAACAAACTTTAAAGCACAGT
CTTTGAGTTTTCTTTCAAAATCCCCATTCATGCCGTCGAAAGAGTGCAGC
CATCCCTTTCAAACACCGCCTGTCGCGTACCACCACGTCTCACGCACGAG
GTCCTAACCCTTTTGGGTCGAAGGGGAGCTGAGCCCAACGTCACAGCACA
AGCAGCCTCCCTGCCCGGCTTGGACAAGCCTCATTTTGACGTTTTGTTTC
CTCGATACGTGGGCTGGCTTTCCTTCACACAGCGTGGCAGACTCTGGTGT
TGCAGCTGGTTAACCACGGTATCGGATGAGTGGGCGGTGACAGCTTGGAC
TGTGGAGTGGGGACGAAGGAAAGTAGCTCCTCCTACCGCTTATTGAAGGC
CGCTCTATCACTCGGGCAGACACAATACCGGGATGCAAAGCTGCAGTCAC
AAGAAAATGGCGTCGAATTGGTGTTGTCAAGGATCCTCTTGTGTGGAAAG
AGTCCAGGAACAGGCTATGGCAGCGAAAACAAAGAAGGGGACAAGAGTAT
TTCACAACAGGGCATCTCCCAGGATGCTGCTTTGTGCATGGTTGAGGTAC
GTCAATTTGAGCTCACAGATCAATTTAGCGCACGCTTCCTGACCGCTGGG
CTTTAAAAGAGAGTGAACGATTTCAAATTGTGAGGGAGAGGCACATTTTG
TCCAAGGCACGGTAGACTCAGCATGCGCGCGACCGGGCGTATCGTGTGTC
AGGGGTGCACTGGCTCGTGTCTGGAGCGTCATGAAGCAATCCTCCTCACG
CGTGCCATCATACCATCTCATCAACAGCTTCTTTTCGCTTCTCCTCCATC
AACCTCTGCCAACGTCCGCCTTCCTCCACCCATTCCCGTCGTTGCCCTCC
CGTCCCTGCCCTCCCCCCCTCCCTCCTCCCCCCCTTTGTCTCTCCCCTTT
CGCTCCCTTCCCCACGCTCGGCGCCATCCCCCCCGTGGTCCTCACGGAAG
GAGAGACGGAGCGAAGCAGCGACTTGCTCGCGGAGCTGGACGAACTGGCA
GGGGAGGGAAAATACCAGGAAGCTTTGGCTTTGGTCGGGAGTGGGGGGCA
TGTGGTGGGGCCGCCGCACTACCACAAGGTGAGGGGAAGCGGGGCCAAGC
CTTTTCCATCGAGCACATATATGTATGGGAGCGAGTGCCTGGCTTTTCCA
TCGGCATATGGACGGCGGCATGGTCTGGAGTCTTGA
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Coding sequence (CDS) from alignment at KK037247.1:88227..89562-

>rna7916 ID=rna7916|Name=rna7916|organism=Nannochloropsis gaditana|type=CDS|length=1146bp|location=Sequence derived from alignment at KK037247.1:88227..89562- (Nannochloropsis gaditana)
CTTCTTTTCGCTTCTCCTCCATCAACCTCTGCCAACGTCCGCCTTCCTCC
ACCCATTCCCGTCGTTGCCCTCCCGTCCCTGCCCTCCCCCCCTCCCTCCT
CCCCCCCTTTGTCTCTCCCCTTTCGCTCCCTTCCCCACGCTCGGCGCCAT
CCCCCCCGTGGTCCTCACGGAAGGAGAGACGGAGCGAAGCAGCGACTTGC
TCGCGGAGCTGGACGAACTGGCAGGGGAGGGAAAATACCAGGAAGCTTTG
GCTTTGGTCGGGAGTGGGGGGCATGTGGTGGGGCCGCCGCACTACCACAA
GGTGAGGGGAAGCGGGGCCAAGCCTTTTCCATCGAGCACATATATGTATG
GGAGCGAGTGCCTGGCTTTTCCATCGGCATATGGACGGCGGCATGGTCTG
GAGTCTTGAATGCAAAGCTGCAGTCACAAGAAAATGGCGTCGAATTGGTG
TTGTCAAGGATCCTCTTGTGTGGAAAGAGTCCAGGAACAGGCTATGGCAG
CGAAAACAAAGAAGGGGACAAGAGTATTTCACAACAGGGCATCTCCCAGG
ATGCTGCTTTGTGCATGGTTGAGCTTCTTTTCGCTTCTCCTCCATCAACC
TCTGCCAACGTCCGCCTTCCTCCACCCATTCCCGTCGTTGCCCTCCCGTC
CCTGCCCTCCCCCCCTCCCTCCTCCCCCCCTTTGTCTCTCCCCTTTCGCT
CCCTTCCCCACGCTCGGCGCCATCCCCCCCGTGGTCCTCACGGAAGGAGA
GACGGAGCGAAGCAGCGACTTGCTCGCGGAGCTGGACGAACTGGCAGGGG
AGGGAAAATACCAGGAAGCTTTGGCTTTGGTCGGGAGTGGGGGGCATGTG
GTGGGGCCGCCGCACTACCACAAGGTGAGGGGAAGCGGGGCCAAGCCTTT
TCCATCGAGCACATATATGTATGGGAGCGAGTGCCTGGCTTTTCCATCGG
CATATGGACGGCGGCATGGTCTGGAGTCTTGAATGCAAAGCTGCAGTCAC
AAGAAAATGGCGTCGAATTGGTGTTGTCAAGGATCCTCTTGTGTGGAAAG
AGTCCAGGAACAGGCTATGGCAGCGAAAACAAAGAAGGGGACAAGAGTAT
TTCACAACAGGGCATCTCCCAGGATGCTGCTTTGTGCATGGTTGAG
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Synonyms
Publications