EWM22789.1, cds7886 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22789.1 vs. NCBI_GenBank
Match: gi|585103406|gb|EWM22789.1| (Exoribonuclease, phosphorolytic domain 1 [Nannochloropsis gaditana]) HSP 1 Score: 682.174 bits (1759), Expect = 0.000e+0 Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0 Query: 1 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQEGGGEGGWGGLGEMTRDDRAMRAQDEKHPESVDGDVK 338 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQEGGGEGGWGGLGEMTRDDRAMRAQDEKHPESVDGDVK Sbjct: 1 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQEGGGEGGWGGLGEMTRDDRAMRAQDEKHPESVDGDVK 338
BLAST of EWM22789.1 vs. NCBI_GenBank
Match: gi|585103405|gb|EWM22788.1| (Exoribonuclease, phosphorolytic domain 1 [Nannochloropsis gaditana]) HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0 Identity = 335/338 (99.11%), Postives = 335/338 (99.11%), Query Frame = 0 Query: 1 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQEGGGEGGWGGLGEMTRDDRAMRAQDEKHPESVDGDVK 338 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAYNQLRPVFIDLNT ASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQEGGGEGGWGGLGEMTRDDRAMRAQDEKHPESVDGDVK Sbjct: 1 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAYNQLRPVFIDLNT---ASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQEGGGEGGWGGLGEMTRDDRAMRAQDEKHPESVDGDVK 335
BLAST of EWM22789.1 vs. NCBI_GenBank
Match: gi|299470099|emb|CBN78128.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 207.608 bits (527), Expect = 7.890e-62 Identity = 128/304 (42.11%), Postives = 173/304 (56.91%), Query Frame = 0 Query: 1 MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPS------PARSESFRMDGRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPKARQ--DVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEG-GVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRL 295 M NCY P A N +R +D P+ P+ + + R DGRA +R V++D+ V+HA+GSAY+E HTKV+ AVYGP A+ D FS+EG+L CDF Y+PFA+ GGR RE GG ++D+ER S + Q LE+S+Q+ +L KSVV V V+VLQ DGGE+ A +CAS+ALA+AGIEL+ LV +C V G ++ +DPT EE K G GV+ +ALMP S +VTQ WQ+GR D + ALE+ DG VH +M +L Sbjct: 1 MNNCYKPLAAPAQ-------NDAKSKRRDRDGKAPNGTATKEPSLASTTREDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAM---------PGGR---RETRGG-----KKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSV-------GYCGTQMVLDPTKEEE----------KSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKL 263
BLAST of EWM22789.1 vs. NCBI_GenBank
Match: gi|470512463|ref|XP_004352492.1| (3' exoribonuclease family, domain 1 domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440802076|gb|ELR23015.1| 3' exoribonuclease family, domain 1 domain containing protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 174.866 bits (442), Expect = 4.652e-49 Identity = 101/267 (37.83%), Postives = 150/267 (56.18%), Query Frame = 0 Query: 35 PSPARSESF-----RMDGRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLL 296 P+P R ++F R+DGR+ ++ RPVF+ +S A+GSAY+EM TKV+ VYGP+ +S++GKL C F+ + FA E G R EE+ S + QALE S++L PKS ++VFVLVL+ GG VGAAI+ ASLALA+AGIE++ LVASC V G + + +DP+ AEE + + +A+MP + E+TQ+ Q G ++ + A+E+ DG ++ +MR+ LL Sbjct: 25 PAPKRPDAFVVEGKRLDGRSPDEFRPVFLKTGVISQAAGSAYIEMNQTKVICGVYGPRQTPKTVYSEKGKLNCFFKLATFA---------ENGERRKYVSD----------KEEKELSMLMVQALEVSLRLETFPKSELDVFVLVLEESGGMVGAAITAASLALADAGIEMYDLVASCSV-------GVVDSHILLDPSIAEEKAAQSN---------LMVAIMPSANEITQMLQTGEIEHTKAPEAIELCLDGCSKIYQMMRQNLL 256
BLAST of EWM22789.1 vs. NCBI_GenBank
Match: gi|1183381827|gb|ORY07238.1| (ribosomal protein S5 domain 2-like protein [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 162.54 bits (410), Expect = 1.529e-44 Identity = 93/260 (35.77%), Postives = 149/260 (57.31%), Query Frame = 0 Query: 44 RMDGRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRD-EERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTD--GGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYME 300 R DGR+ +LRP+F+ +S A+GSAY+EM+HTK+ A+YGP+ + F+++G+L C+F+++PF+ RR G RD +ER S+ ++QAL SV+L PKSVV++++ VL++D G V AAI+CAS+ALA+AGIE+ LVA+ S G + +V +D T++EE ++G + L+ MP EVT + G + S +A+E D ++++M LLT ++ Sbjct: 34 RSDGRSTEELRPIFLKTGLISQANGSAYIEMQHTKIACAIYGPRQAKKPSFNNKGELNCEFKFTPFSCAKRR---------------------GHLRDAQERELSQIITQALTPSVRLELFPKSVVDIYISVLESDGIGNTVAAAITCASVALADAGIEMLDLVAA-------SSGGFFQSQVILDCTSSEEELQQGS---------LVLSYMPSLNEVTHIVLGGETEVAMSNQAIEQCIDTCTKIYSVMNHSLLTSIQ 256
BLAST of EWM22789.1 vs. NCBI_GenBank
Match: gi|1191038535|ref|XP_020896571.1| (exosome complex component MTR3-like [Exaiptasia pallida] >gi|999977316|gb|KXJ16490.1| Exosome complex component MTR3 [Exaiptasia pallida]) HSP 1 Score: 155.221 bits (391), Expect = 1.494e-41 Identity = 99/282 (35.11%), Postives = 154/282 (54.61%), Query Frame = 0 Query: 30 KDDTGPSPARSESFRMDGRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPK-ARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVG---LALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLL-----TYMEQE 302 K+D + R+DGR + LRP+F+ VS A+GSAYLE ++TK++ AVYGP+ A + EFS +G+L C+F+Y+PF+ + RR G Q EE+ S+ + +ALE+SV L + PKS V++FV VL+ DG + A I CAS+ALA+AGIE+ LVA+C T ++ +E +DP E +E VVG +AL+P V+ + Q+G + E+A+ DG ++ +M+ L+ T++ +E Sbjct: 23 KNDPDKPLVXKDGXRVDGRLCDGLRPIFLRAXLVSQANGSAYLETQNTKLICAVYGPREAPRKQEFSMKGRLTCEFKYAPFSCKQRR--------------------GYQQDSEEKGNSQLIVEALESSVFLDRFPKSQVDIFVTVLENDGSALSAGIVCASVALADAGIEMQDLVAAC-----TLAQTSKEC--ILDPNVDELSSQE----------VVGRMTVALLPSVNLVSGLVQEGEMTKEDCEKAVNACIDGCVRIYPVMQDALIKNVKRTFLSKE 267
BLAST of EWM22789.1 vs. NCBI_GenBank
Match: gi|762096232|ref|XP_011430637.1| (PREDICTED: exosome complex component MTR3-like [Crassostrea gigas]) HSP 1 Score: 155.221 bits (391), Expect = 1.644e-41 Identity = 90/251 (35.86%), Postives = 136/251 (54.18%), Query Frame = 0 Query: 44 RMDGRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPK-ARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRK 293 R DGR Q+RP+F+ +S A GSAY+E TKV+ AVYGP+ + EFS +G+L C+F+++ F+ R RR Q +EER S + ALE +V++ K PK+ V V+V VLQ DG + A+++CAS+ALA AGIE++ LV C TPSE V +DPT +E+ E E G G V L LMP +V+ + KG ++ + + D + ++ ++++ Sbjct: 36 RKDGRKPEQVRPIFLKAGIISQARGSAYIEQNETKVMCAVYGPREVTKKEEFSMKGQLTCEFKFATFSCRVRRQYQ--------------------QDNEERDYSCQLQDALEPAVRMDKFPKAQVNVYVTVLQNDGSPLAASLTCASVALANAGIEMYDLVVGCS-ARITPSE------VFIDPTESEDYKAENDNEAG--NGSVTLGLMPSLNQVSAITSKGEVEFELLNKGTKQCVDVCQKLYPVLQQ 257
BLAST of EWM22789.1 vs. NCBI_GenBank
Match: gi|750961118|gb|KIK18047.1| (hypothetical protein PISMIDRAFT_633097 [Pisolithus microcarpus 441] >gi|750965554|gb|KIK22409.1| hypothetical protein PISMIDRAFT_507637 [Pisolithus microcarpus 441]) HSP 1 Score: 148.673 bits (374), Expect = 3.370e-39 Identity = 89/254 (35.04%), Postives = 135/254 (53.15%), Query Frame = 0 Query: 47 GRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRD-EERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDG--GEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLT 297 GR +RP+F+ VS A+GSAY+E E TK+ AVYGP+ + +S+ G+L + +++PF+ RR P RD E+RA + V Q++ +S+ L PKS ++VF++V++ DG G + + AS ALA+AGIE+ GLVASC S G R +R+DP +E G V LA MP +T V+Q GR+ +G+ + +E+ D VHA+M + LL+ Sbjct: 37 GRGLADIRPIFLQPGLVSQANGSAYIETEKTKLACAVYGPRQSKTTTYSERGRLNVEVKFAPFSCVRRR---------------------SPLRDAEDRAVAIAVYQSIVSSICLELFPKSTIDVFIVVIENDGIEGCIASGSIAASTALADAGIEMLGLVASC-------SAGVRGDEIRLDPVE---------KEAAAADGTVILACMPALSSITNVYQSGRVSVQGALKCMELCQDRCIDVHAVMAQSLLS 253
BLAST of EWM22789.1 vs. NCBI_GenBank
Match: gi|676493138|ref|XP_009066142.1| (hypothetical protein LOTGIDRAFT_236786 [Lottia gigantea] >gi|556094539|gb|ESO83192.1| hypothetical protein LOTGIDRAFT_236786 [Lottia gigantea]) HSP 1 Score: 148.673 bits (374), Expect = 3.626e-39 Identity = 91/261 (34.87%), Postives = 142/261 (54.41%), Query Frame = 0 Query: 44 RMDGRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPK--ARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYMEQE 302 R DGR +Q RP+F+ +S A GSAY+E HTKV+ AVYGP+ R++ +FS +G++ C+F+++ F+ + +R G Q EE+ S + +ALE +VQL K PKS V +++ VLQ DG + A+I+CASLALA AGIE+F LV V + VDP EE G EGGVV L LMP +++ + KG L+ + +A++ + V+ +++ L+ ++++ Sbjct: 36 RRDGRKPDQARPLFLRPGLISQAKGSAYIEQNHTKVICAVYGPREVIRKE-DFSMKGQITCEFKFATFSCKKKR--------------------GHQQDSEEKDYSVQLLEALEPAVQLDKFPKSQVNLYLTVLQNDGSALAASITCASLALAHAGIEMFDLVVGSSVRI-------HGNEILVDPCEEEE-FHSNTNIGVDEGGVV-LGLMPSINQISALTSKGELNFDTTSQAVKTCIQNCQKVYPVLQNCLVNSLKEK 266
BLAST of EWM22789.1 vs. NCBI_GenBank
Match: gi|1207955154|ref|XP_021367728.1| (exosome complex component MTR3-like [Mizuhopecten yessoensis]) HSP 1 Score: 145.591 bits (366), Expect = 6.864e-38 Identity = 88/255 (34.51%), Postives = 142/255 (55.69%), Query Frame = 0 Query: 44 RMDGRAYNQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPK--ARQDVEFSDEGKLICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTVSQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIELFGLVASCEV-VAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGLALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRL 295 R DGR+ LRP+F+ + VS A GSAY+E ++TKV+ AVYGP+ R++ +FS +G + C F+Y+ F+ R RR Q EE+ S + ALE +V + K PK+ V+++V VLQ DG + AAI+CAS+ALA AG++++ LVA C V +A + V VDPT +EE + + G V L MP +V+ + KG ++ ++A+ + + ++ ++ +++K L Sbjct: 34 RHDGRSPETLRPIFLKADVVSQARGSAYIEQDNTKVMCAVYGPREVGRKE-DFSMKGIINCVFKYATFSCRYRR--------------------SYQQDSEEKDMSVQLLDALEPAVCMHKFPKAQVDIYVTVLQNDGSALAAAITCASVALANAGVDMYDLVAGCSVRIA--------DNLVLVDPTESEEYKSQD--DNPVNHGSVTLGYMPSLYQVSAITSKGEIEFEVIKKAINLCGNTSQTLYPVLQKCL 257 The following BLAST results are available for this feature:
BLAST of EWM22789.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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