rna7908, rna7908 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7908
Unique Name	rna7908
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1239
Alignment location	KK037247.1:67805..69334 -

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Properties


Property Name	Value
Product	Exoribonuclease, phosphorolytic domain 1
Orig transcript id	gnl\|cribi\|Naga_100349g4.4135.mrna
Orig protein id	gnl\|cribi\|Naga_100349g4.4135
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:67805..69334 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100349g4	gene7659	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7908	rna7908-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22789.1	cds7886	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:67805..69334-
coding sequence from alignment at KK037247.1:67805..69334-

mRNA sequence

>rna7908 ID=rna7908|Name=rna7908|organism=Nannochloropsis gaditana|type=mRNA|length=1239bp
GGACAACACGTGCATAATTGCTTTTCCAGGCAAGCAACCACCCGTACGAT
CTCGCGAGGCGCTCGCATGGCATGTGTGACGCAATCTGAAGCCTTGCGCT
ACTCACGGCTCAACTTATGTCGTTTTTTAAGGCCTTCTTGTAAAGCCTTC
ATAACCCTCCCATTGACCTCCTCCCGTGGTTTCACAAGCCTCAGGGGTTG
GCATTATGTATAATTGCTACACACCTCGCGTCGCCACGAAGACACAAGTT
AGCACGCTACAAACCAACAGCGAAATTCAAGCGCAAAGAAAAAAGGATGA
CACAGGACCATCACCGGCGAGAAGCGAGTCTTTTCGCATGGATGGACGGG
CCTACAACCAGCTTCGGCCTGTATTTATAGACCTGAATACGGCCTCTGGC
TCGGCATATTTGGAAATGGAGCATACCAAAGTGCTCGTTGCGGTGTACGG
ACCCAAAGCACGTCAAGACGTGGAATTCAGTGACGAAGGTAAACTTATAT
GCGATTTCAGGTACTCTCCCTTCGCCCTCCGGGCCCGCAGGCCGACGGGG
AAGGAAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGAGGTGGGGG
GGGAGGGCCCCAACGGGACGAGGAACGTGCCGCTTCCCGGACGGTCTCGC
AAGCCTTGGAGGCGTCAGTGCAGCTGGCAAAGCTGCCCAAAAGCGTGGTG
GAAGTCTTCGTCTTAGTCTTGCAGACAGACGGGGGCGAGGTCGGAGCGGC
CATCTCCTGCGCCTCCCTGGCACTCGCCGAGGCGGGTATCGAACTCTTCG
GGCTGGTCGCGTCCTGTGAAGTGGTGGCTTTCACGCCCAGCGAGGGTAAA
AGGGAATGGAGGGTCCGCGTAGACCCGACCGCGGCGGAGGAAGGCGGGGA
GGAGGGCGGACGGGAGGGTGGGAAGGAGGGAGGGGTGGTAGGGTTGGCCT
TGATGCCGGTATCGGGTGAAGTCACGCAAGTATGGCAGAAGGGTCGTCTG
GACACTCGAGGGAGCGAAAGGGCCTTGGAAATGGCAGCGGACGGGGCTAG
GATGGTGCATGCATTGATGCGGAAGCGCCTACTGACGTACATGGAGCAGG
AGGGCGGAGGGGAGGGGGGGTGGGGAGGGCTTGGAGAGATGACGAGGGAT
GACCGGGCAATGCGGGCACAAGACGAGAAGCACCCAGAGAGCGTGGACGG
AGATGTGAAATAAAGTAAGAAAAAGTGAAAGTAAAGCCG

protein sequence of rna7908

>rna7908-protein ID=rna7908-protein|Name=rna7908|organism=Nannochloropsis gaditana|type=polypeptide|length=338bp
MYNCYTPRVATKTQVSTLQTNSEIQAQRKKDDTGPSPARSESFRMDGRAY
NQLRPVFIDLNTVSHASGSAYLEMEHTKVLVAVYGPKARQDVEFSDEGKL
ICDFRYSPFALRARRPTGKEKGGREGGREGGGGGGGGPQRDEERAASRTV
SQALEASVQLAKLPKSVVEVFVLVLQTDGGEVGAAISCASLALAEAGIEL
FGLVASCEVVAFTPSEGKREWRVRVDPTAAEEGGEEGGREGGKEGGVVGL
ALMPVSGEVTQVWQKGRLDTRGSERALEMAADGARMVHALMRKRLLTYME
QEGGGEGGWGGLGEMTRDDRAMRAQDEKHPESVDGDVK

mRNA from alignment at KK037247.1:67805..69334-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7908 ID=rna7908|Name=rna7908|organism=Nannochloropsis gaditana|type=mRNA|length=1530bp|location=Sequence derived from alignment at KK037247.1:67805..69334- (Nannochloropsis gaditana)
GGACAACACGTGCATAATTGCTTTTCCAGGCAAGCAACCACCCGTACGAT
CTCGCGAGGCGCTCGCATGGCATGTGTGACGCAATCTGAAGCCTTGCGCT
ACTCACGGCTCAACTTATGTCGTTTTTTAAGGCCTTCTTGTAAAGCCTTC
ATAACCCTCCCATTGACCTCCTCCCGTGGTTTCACAAGCCTCAGGGGTTG
GCATTATGTATAATTGCTACACACCTCGCGTCGCCACGAAGACACAAGTT
AGCACGCTACAAACCAACAGCGAAATTCAAGCGCAAAGAAAAAAGGATGA
CACAGGACCATCACCGGCGAGAAGCGAGGTAAAGGCAGCTTGACATGTTT
CATAGCTCGCATCCCTCTGTATTTTGCACTCCTCATTTCGGCAAACAGCT
GTCGAAGAAAGAAGCGTGGCTCATTTCTTGCTAAACGACAGTCTTTTCGC
ATGGATGGACGGGCCTACAACCAGCTTCGGCCTGTATTTATAGACCTGAA
TACGGTCAGTCATGTACGTGCCATTCCATTCCCTATACTTCCTCTTATAA
AGAAAGGATGCAGACCTCCTCGCGTCTTTTTATTCCTCCCTTGGCTACAG
GACGCCTTCTTATAGCTTTCTTTCACGCGCTCAATTGATTGTCCTTCCTT
GCGTCCTCCTATTTCTCGTCCTATATCAACAGGCCTCTGGCTCGGCATAT
TTGGAAATGGAGCATACCAAAGTGCTCGTTGCGGTGTACGGACCCAAAGC
ACGTCAAGACGTGGAATTCAGTGACGAAGGTAAACTTATATGCGATTTCA
GGTACTCTCCCTTCGCCCTCCGGGCCCGCAGGCCGACGGGGAAGGAAAAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGAGGTGGGGGGGGAGGGCC
CCAACGGGACGAGGAACGTGCCGCTTCCCGGACGGTCTCGCAAGCCTTGG
AGGCGTCAGTGCAGCTGGCAAAGCTGCCCAAAAGCGTGGTGGAAGTCTTC
GTCTTAGTCTTGCAGACAGACGGGGGCGAGGTCGGAGCGGCCATCTCCTG
CGCCTCCCTGGCACTCGCCGAGGCGGGTATCGAACTCTTCGGGCTGGTCG
CGTCCTGTGAAGTGGTGGCTTTCACGCCCAGCGAGGGTAAAAGGGAATGG
AGGGTCCGCGTAGACCCGACCGCGGCGGAGGAAGGCGGGGAGGAGGGCGG
ACGGGAGGGTGGGAAGGAGGGAGGGGTGGTAGGGTTGGCCTTGATGCCGG
TATCGGGTGAAGTCACGCAAGTATGGCAGAAGGGTCGTCTGGACACTCGA
GGGAGCGAAAGGGCCTTGGAAATGGCAGCGGACGGGGCTAGGATGGTGCA
TGCATTGATGCGGAAGCGCCTACTGACGTACATGGAGCAGGAGGGCGGAG
GGGAGGGGGGGTGGGGAGGGCTTGGAGAGATGACGAGGGATGACCGGGCA
ATGCGGGCACAAGACGAGAAGCACCCAGAGAGCGTGGACGGAGATGTGAA
ATAAAGTAAGAAAAAGTGAAAGTAAAGCCG

Coding sequence (CDS) from alignment at KK037247.1:67805..69334-

>rna7908 ID=rna7908|Name=rna7908|organism=Nannochloropsis gaditana|type=CDS|length=3051bp|location=Sequence derived from alignment at KK037247.1:67805..69334- (Nannochloropsis gaditana)
GCCTCTGGCTCGGCATATTTGGAAATGGAGCATACCAAAGTGCTCGTTGC
GGTGTACGGACCCAAAGCACGTCAAGACGTGGAATTCAGTGACGAAGGTA
AACTTATATGCGATTTCAGGTACTCTCCCTTCGCCCTCCGGGCCCGCAGG
CCGACGGGGAAGGAAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGG
AGGTGGGGGGGGAGGGCCCCAACGGGACGAGGAACGTGCCGCTTCCCGGA
CGGTCTCGCAAGCCTTGGAGGCGTCAGTGCAGCTGGCAAAGCTGCCCAAA
AGCGTGGTGGAAGTCTTCGTCTTAGTCTTGCAGACAGACGGGGGCGAGGT
CGGAGCGGCCATCTCCTGCGCCTCCCTGGCACTCGCCGAGGCGGGTATCG
AACTCTTCGGGCTGGTCGCGTCCTGTGAAGTGGTGGCTTTCACGCCCAGC
GAGGGTAAAAGGGAATGGAGGGTCCGCGTAGACCCGACCGCGGCGGAGGA
AGGCGGGGAGGAGGGCGGACGGGAGGGTGGGAAGGAGGGAGGGGTGGTAG
GGTTGGCCTTGATGCCGGTATCGGGTGAAGTCACGCAAGTATGGCAGAAG
GGTCGTCTGGACACTCGAGGGAGCGAAAGGGCCTTGGAAATGGCAGCGGA
CGGGGCTAGGATGGTGCATGCATTGATGCGGAAGCGCCTACTGACGTACA
TGGAGCAGGAGGGCGGAGGGGAGGGGGGGTGGGGAGGGCTTGGAGAGATG
ACGAGGGATGACCGGGCAATGCGGGCACAAGACGAGAAGCACCCAGAGAG
CGTGGACGGAGATGTGAAATAATCTTTTCGCATGGATGGACGGGCCTACA
ACCAGCTTCGGCCTGTATTTATAGACCTGAATACGGTCAGTCATATGTAT
AATTGCTACACACCTCGCGTCGCCACGAAGACACAAGTTAGCACGCTACA
AACCAACAGCGAAATTCAAGCGCAAAGAAAAAAGGATGACACAGGACCAT
CACCGGCGAGAAGCGAGGCCTCTGGCTCGGCATATTTGGAAATGGAGCAT
ACCAAAGTGCTCGTTGCGGTGTACGGACCCAAAGCACGTCAAGACGTGGA
ATTCAGTGACGAAGGTAAACTTATATGCGATTTCAGGTACTCTCCCTTCG
CCCTCCGGGCCCGCAGGCCGACGGGGAAGGAAAAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGGGAGGTGGGGGGGGAGGGCCCCAACGGGACGAGGA
ACGTGCCGCTTCCCGGACGGTCTCGCAAGCCTTGGAGGCGTCAGTGCAGC
TGGCAAAGCTGCCCAAAAGCGTGGTGGAAGTCTTCGTCTTAGTCTTGCAG
ACAGACGGGGGCGAGGTCGGAGCGGCCATCTCCTGCGCCTCCCTGGCACT
CGCCGAGGCGGGTATCGAACTCTTCGGGCTGGTCGCGTCCTGTGAAGTGG
TGGCTTTCACGCCCAGCGAGGGTAAAAGGGAATGGAGGGTCCGCGTAGAC
CCGACCGCGGCGGAGGAAGGCGGGGAGGAGGGCGGACGGGAGGGTGGGAA
GGAGGGAGGGGTGGTAGGGTTGGCCTTGATGCCGGTATCGGGTGAAGTCA
CGCAAGTATGGCAGAAGGGTCGTCTGGACACTCGAGGGAGCGAAAGGGCC
TTGGAAATGGCAGCGGACGGGGCTAGGATGGTGCATGCATTGATGCGGAA
GCGCCTACTGACGTACATGGAGCAGGAGGGCGGAGGGGAGGGGGGGTGGG
GAGGGCTTGGAGAGATGACGAGGGATGACCGGGCAATGCGGGCACAAGAC
GAGAAGCACCCAGAGAGCGTGGACGGAGATGTGAAATAATCTTTTCGCAT
GGATGGACGGGCCTACAACCAGCTTCGGCCTGTATTTATAGACCTGAATA
CGGTCAGTCATATGTATAATTGCTACACACCTCGCGTCGCCACGAAGACA
CAAGTTAGCACGCTACAAACCAACAGCGAAATTCAAGCGCAAAGAAAAAA
GGATGACACAGGACCATCACCGGCGAGAAGCGAGGCCTCTGGCTCGGCAT
ATTTGGAAATGGAGCATACCAAAGTGCTCGTTGCGGTGTACGGACCCAAA
GCACGTCAAGACGTGGAATTCAGTGACGAAGGTAAACTTATATGCGATTT
CAGGTACTCTCCCTTCGCCCTCCGGGCCCGCAGGCCGACGGGGAAGGAAA
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGAGGTGGGGGGGGAGGG
CCCCAACGGGACGAGGAACGTGCCGCTTCCCGGACGGTCTCGCAAGCCTT
GGAGGCGTCAGTGCAGCTGGCAAAGCTGCCCAAAAGCGTGGTGGAAGTCT
TCGTCTTAGTCTTGCAGACAGACGGGGGCGAGGTCGGAGCGGCCATCTCC
TGCGCCTCCCTGGCACTCGCCGAGGCGGGTATCGAACTCTTCGGGCTGGT
CGCGTCCTGTGAAGTGGTGGCTTTCACGCCCAGCGAGGGTAAAAGGGAAT
GGAGGGTCCGCGTAGACCCGACCGCGGCGGAGGAAGGCGGGGAGGAGGGC
GGACGGGAGGGTGGGAAGGAGGGAGGGGTGGTAGGGTTGGCCTTGATGCC
GGTATCGGGTGAAGTCACGCAAGTATGGCAGAAGGGTCGTCTGGACACTC
GAGGGAGCGAAAGGGCCTTGGAAATGGCAGCGGACGGGGCTAGGATGGTG
CATGCATTGATGCGGAAGCGCCTACTGACGTACATGGAGCAGGAGGGCGG
AGGGGAGGGGGGGTGGGGAGGGCTTGGAGAGATGACGAGGGATGACCGGG
CAATGCGGGCACAAGACGAGAAGCACCCAGAGAGCGTGGACGGAGATGTG
AAATAATCTTTTCGCATGGATGGACGGGCCTACAACCAGCTTCGGCCTGT
ATTTATAGACCTGAATACGGTCAGTCATATGTATAATTGCTACACACCTC
GCGTCGCCACGAAGACACAAGTTAGCACGCTACAAACCAACAGCGAAATT
CAAGCGCAAAGAAAAAAGGATGACACAGGACCATCACCGGCGAGAAGCGA
G

Synonyms

Publications