EWM22817.1, cds7856 (CDS) Nannochloropsis gaditana

Overview
NameEWM22817.1
Unique Namecds7856
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002475.1:52493..53503 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22817.1
ProductSDA1 family protein
Orig transcript idgnl|cribi|Naga_100437g1.4384.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002475.1supercontigCM002475.1:52493..53503 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: INTERPRO
TermDefinition
IPR007949SDA1_dom
Homology
BLAST of EWM22817.1 vs. NCBI_GenBank
Match: gi|585103444|gb|EWM22817.1| (SDA1 family protein [Nannochloropsis gaditana])

HSP 1 Score: 644.81 bits (1662), Expect = 0.000e+0
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 0
Query:    1 MSLGESGEEEDEEGLEDDWEEVEEEEEEEEEEEEEEWIDVSSASENGEEEAGEGKEGVEDGEEEDGSEEEEEEEEVKGRGFGGNTMGGEEVNREETVGSEKGEGEEAVRNSLTPTPPFPSTPVQSKRLKRAAKREAAHAARLQRQEKRASAALTSLIRPAGTDVMKRVEAQRVLSTEDFAQIRRLQKRFEEAKRDPRQVRGGGKTGKTEQVLLVKRAGRKRGRDVEEEEEEEGVGGGREGGMLRPEDLEGYKKRRRASKEERLMKIVSGKNTFEHAGHAGGLTNAEKKRKKNYMMVRKGKRDVFSKLRDTQQEQKARKVKGKKSEFAREARKRRRC 336
            MSLGESGEEEDEEGLEDDWEEVEEEEEEEEEEEEEEWIDVSSASENGEEEAGEGKEGVEDGEEEDGSEEEEEEEEVKGRGFGGNTMGGEEVNREETVGSEKGEGEEAVRNSLTPTPPFPSTPVQSKRLKRAAKREAAHAARLQRQEKRASAALTSLIRPAGTDVMKRVEAQRVLSTEDFAQIRRLQKRFEEAKRDPRQVRGGGKTGKTEQVLLVKRAGRKRGRDVEEEEEEEGVGGGREGGMLRPEDLEGYKKRRRASKEERLMKIVSGKNTFEHAGHAGGLTNAEKKRKKNYMMVRKGKRDVFSKLRDTQQEQKARKVKGKKSEFAREARKRRRC
Sbjct:    1 MSLGESGEEEDEEGLEDDWEEVEEEEEEEEEEEEEEWIDVSSASENGEEEAGEGKEGVEDGEEEDGSEEEEEEEEVKGRGFGGNTMGGEEVNREETVGSEKGEGEEAVRNSLTPTPPFPSTPVQSKRLKRAAKREAAHAARLQRQEKRASAALTSLIRPAGTDVMKRVEAQRVLSTEDFAQIRRLQKRFEEAKRDPRQVRGGGKTGKTEQVLLVKRAGRKRGRDVEEEEEEEGVGGGREGGMLRPEDLEGYKKRRRASKEERLMKIVSGKNTFEHAGHAGGLTNAEKKRKKNYMMVRKGKRDVFSKLRDTQQEQKARKVKGKKSEFAREARKRRRC 336          
BLAST of EWM22817.1 vs. NCBI_GenBank
Match: gi|299470894|emb|CBN78843.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.9745 bits (232), Expect = 1.743e-17
Identity = 65/172 (37.79%), Postives = 98/172 (56.98%), Query Frame = 0
Query:  166 KRVEAQRVLSTEDFAQIRRLQKRFEEAKRDPRQVRGGGKTGKTEQVLLVKRAGRKRGRDVEEEEEEEGVGGGREGGMLR--PEDLEGYKKRRRASKEERLMKIVSGKNTFEHAGHAGGLTNAEKKRKKNYMMVRKGKRDVFSKLRDTQQEQKARKVKGKKSEFAREARKRRR 335
            +RV++ R+LS EDF +I++L+ +   A                      K+   KR  ++   + E+   GG EG      P  LEGY+KRRRA+ EERL  ++ G+  F+   HAGGLTNAEK+RKKNY+M+RKGK  V  K R  +++  A+K +G K + +R  +K++R
Sbjct:  616 QRVDSTRILSAEDFEKIKKLKHQAATA---------------------AKQRTHKRKHNIGGSDSEDSDDGGEEGQSFSVDPRALEGYRKRRRATLEERLEGVIRGREKFQANSHAGGLTNAEKERKKNYLMIRKGKA-VKHKTRMGEKQVMAQKNRGGKVQMSRNKQKKKR 765          
BLAST of EWM22817.1 vs. NCBI_GenBank
Match: gi|1214711793|gb|OWZ22777.1| (hypothetical protein PHMEG_0002449 [Phytophthora megakarya])

HSP 1 Score: 80.8777 bits (198), Expect = 4.450e-13
Identity = 55/169 (32.54%), Postives = 92/169 (54.44%), Query Frame = 0
Query:  167 RVEAQRVLSTEDFAQIRRLQKRFEEAKRDPRQVRGGGKTGKTEQVLLVKRAGRKRGRDVEEEEEEEGVGGGREGGMLRPEDLEGYKKRRRASKEERLMKIVSGKNTFEHAGHAGGLTNAEKKRKKNYMMVRKGKRDVFSKLRDTQQEQKARKVKGKKSEFAREARKRRR 335
            R++A+R+L+  DF +I  L+K  + A +DP+                  R+ RK         EE+    G +   + P DLEGY K++R ++EERL  ++ G+  F+H    GG TN EKKR K++MM++K K  V SK+  + ++ +++K +  K     +A+KRR+
Sbjct:  555 RLDARRILTPLDFERIEMLKKERDAALKDPKS-----------------RSKRK--------AEEDAAKAGSDATKVNPTDLEGYSKKKRMTQEERLRVVLEGREDFKHKRSGGGTTNTEKKRLKHFMMIKKSK-SVQSKVLVSARQVQSQKNRVVKKILKHDAKKRRK 697          
BLAST of EWM22817.1 vs. NCBI_GenBank
Match: gi|635370744|emb|CCI41007.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 80.1073 bits (196), Expect = 6.524e-13
Identity = 59/172 (34.30%), Postives = 90/172 (52.33%), Query Frame = 0
Query:  167 RVEAQRVLSTEDFAQIRRLQKRFEEAKRDPRQVRGGGKTGKTEQVLLVKRAGRKRGRDVEEEEEEEGVGGGREGGMLRPEDLEGYKKRRRASKEERLMKIVSGKNTFEHAGHAGGLTNAEKKRKKNYMMVRKGKRDVFSKLRDTQ---QEQKARKVKGKKSEFAREARKRRR 335
            R++A+R+L+  DF +I  L+K   E  RDP+                     R + R  +  E E  +G       + P DLEGY K+RR ++EERL  I+ G+  F+H   +GG TN EKKR K++MM++K +R V SK+  +    Q  K R VK + ++     +KRR+
Sbjct:  565 RIDARRILTALDFERIEILKKERAETSRDPK--------------------NRSKKRQ-QTNENEHALGSNA----VTPNDLEGYTKKRRLTQEERLRSILKGREDFQHKRSSGGTTNTEKKRLKHFMMIKKSRR-VQSKVLKSAREIQHTKNRLVKKQITKL----KKRRK 706          
BLAST of EWM22817.1 vs. NCBI_GenBank
Match: gi|806069124|gb|AKB91759.1| (SDA1 [Phytophthora capsici])

HSP 1 Score: 78.1814 bits (191), Expect = 3.114e-12
Identity = 55/176 (31.25%), Postives = 92/176 (52.27%), Query Frame = 0
Query:  160 AGTDVMKRVEAQRVLSTEDFAQIRRLQKRFEEAKRDPRQVRGGGKTGKTEQVLLVKRAGRKRGRDVEEEEEEEGVGGGREGGMLRPEDLEGYKKRRRASKEERLMKIVSGKNTFEHAGHAGGLTNAEKKRKKNYMMVRKGKRDVFSKLRDTQQEQKARKVKGKKSEFAREARKRRR 335
            A  D   R++A+R+L+  DF +I  L+K  + A +DP+                  R+ RK         EE+      +   + P DLEGY K++R ++EERL  ++ G+  ++H    GG TN EKKR K++MM++K K  V SK+  + ++ + +K +  K     +A+KRR+
Sbjct:  550 AAIDQKDRLDARRILTPLDFERIEMLKKERDAALKDPKS-----------------RSKRK--------AEEDAAKASSDATKVNPTDLEGYSKKKRMTQEERLRVVLEGREDYKHKRSGGGTTNTEKKRLKHFMMIKKSK-SVQSKVLVSARQIQNQKNRVVKKILKHDAKKRRK 699          
BLAST of EWM22817.1 vs. NCBI_GenBank
Match: gi|1173950036|gb|OQR98020.1| (SDA1 family protein [Achlya hypogyna])

HSP 1 Score: 77.411 bits (189), Expect = 5.394e-12
Identity = 59/170 (34.71%), Postives = 90/170 (52.94%), Query Frame = 0
Query:  166 KRVEAQRVLSTEDFAQIRRLQKRFEEAKRDPRQVRGGGKTGKTEQVLLVKRAGRKRGRDVEEEEEEEGVGGGREGGMLRPEDLEGYKKRRRASKEERLMKIVSGKNTFEHAGHAGGLTNAEKKRKKNYMMVRKGKRDVFSKLRDTQQEQKARKVKGKKSEFAREARKRRR 335
            +R++AQR+L+ +DF +I  L+K   EA +DP+                   A RKR     EE E++ +        + P  LEGY K++R ++EERL  ++ G+  F H    GG TN EK R KN++M++K  R V SK+  + +E +    K  K    R+A+KRRR
Sbjct:  555 QRIDAQRILTPKDFERIELLKKEAAEAAKDPK-------------------ARRKRK---AEEVEKKALEAN--FAKVDPSTLEGYAKKKRQTQEERLRSVLEGRENFLHRKSGGGTTNREKARLKNFLMLKKS-RKVQSKVLKSTREIQHLANKTVKKVLKRDAKKRRR 699          
BLAST of EWM22817.1 vs. NCBI_GenBank
Match: gi|675187851|ref|XP_008902810.1| (hypothetical protein PPTG_09551 [Phytophthora parasitica INRA-310] >gi|566028266|gb|ETI51177.1| hypothetical protein F443_05378 [Phytophthora parasitica P1569] >gi|567965624|gb|ETK91094.1| hypothetical protein L915_05235 [Phytophthora parasitica] >gi|567994308|gb|ETL44467.1| hypothetical protein L916_05190 [Phytophthora parasitica] >gi|568023575|gb|ETL97630.1| hypothetical protein L917_05075 [Phytophthora parasitica] >gi|568053983|gb|ETM50789.1| hypothetical protein L914_05191 [Phytophthora parasitica] >gi|568097140|gb|ETN11884.1| hypothetical protein PPTG_09551 [Phytophthora parasitica INRA-310] >gi|570955867|gb|ETP20940.1| hypothetical protein F441_05385 [Phytophthora parasitica CJ01A1] >gi|570991043|gb|ETP48894.1| hypothetical protein F442_05428 [Phytophthora parasitica P10297] >gi|970643638|gb|KUF84808.1| SDA1 protein [Phytophthora nicotianae] >gi|970656009|gb|KUF94080.1| hypothetical protein AM588_10006958 [Phytophthora nicotianae])

HSP 1 Score: 77.411 bits (189), Expect = 5.650e-12
Identity = 54/169 (31.95%), Postives = 90/169 (53.25%), Query Frame = 0
Query:  167 RVEAQRVLSTEDFAQIRRLQKRFEEAKRDPRQVRGGGKTGKTEQVLLVKRAGRKRGRDVEEEEEEEGVGGGREGGMLRPEDLEGYKKRRRASKEERLMKIVSGKNTFEHAGHAGGLTNAEKKRKKNYMMVRKGKRDVFSKLRDTQQEQKARKVKGKKSEFAREARKRRR 335
            R++A+R+L+  DF +I  L+K  + A +DP+                  R+ RK         EE+      +   + P DLEGY K++R ++EERL  ++ G+  F+H    GG TN EKKR K++MM++K K  V SK+  + ++ + +K +  K     +A+KRR+
Sbjct:  558 RLDARRILTPLDFERIEMLKKERDAALKDPKS-----------------RSKRK--------AEEDAAKASSDATKVNPTDLEGYSKKKRMTQEERLRVVLEGREDFKHKRSGGGTTNTEKKRLKHFMMIKKSK-SVQSKVLVSARQVQRQKNRVVKKILKHDAKKRRK 700          
BLAST of EWM22817.1 vs. NCBI_GenBank
Match: gi|570331971|gb|ETO79919.1| (hypothetical protein F444_05423 [Phytophthora parasitica P1976])

HSP 1 Score: 77.411 bits (189), Expect = 6.248e-12
Identity = 54/169 (31.95%), Postives = 90/169 (53.25%), Query Frame = 0
Query:  167 RVEAQRVLSTEDFAQIRRLQKRFEEAKRDPRQVRGGGKTGKTEQVLLVKRAGRKRGRDVEEEEEEEGVGGGREGGMLRPEDLEGYKKRRRASKEERLMKIVSGKNTFEHAGHAGGLTNAEKKRKKNYMMVRKGKRDVFSKLRDTQQEQKARKVKGKKSEFAREARKRRR 335
            R++A+R+L+  DF +I  L+K  + A +DP+                  R+ RK         EE+      +   + P DLEGY K++R ++EERL  ++ G+  F+H    GG TN EKKR K++MM++K K  V SK+  + ++ + +K +  K     +A+KRR+
Sbjct:  558 RLDARRILTPLDFERIEMLKKERDAALKDPKS-----------------RSKRK--------AEEDAAKASSDATKVNPTDLEGYSKKKRMTQEERLRVVLEGREDFKHKRSGGGTTNTEKKRLKHFMMIKKSK-SVQSKVLVSARQVQRQKNRVVKKILKHDAKKRRK 700          
BLAST of EWM22817.1 vs. NCBI_GenBank
Match: gi|698798212|ref|XP_009832135.1| (hypothetical protein H257_08060 [Aphanomyces astaci] >gi|574113063|gb|ETV78554.1| hypothetical protein H257_08060 [Aphanomyces astaci])

HSP 1 Score: 76.6406 bits (187), Expect = 1.079e-11
Identity = 59/171 (34.50%), Postives = 87/171 (50.88%), Query Frame = 0
Query:  167 RVEAQRVLSTEDFAQIRRLQKRFEEAKRDPRQVRGGGKTGKTEQVLLVKRAGRKRGRDVEEEEEEEGVGGGREGGMLRPEDLEGYKKRRRASKEERLMKIVSGKNTFEHAGHAGGLTNAEKKRKKNYMMVRKGKRDVFSKLRDTQ--QEQKARKVKGKKSEFAREARKRRR 335
            RV+A+R+L+ +DF +I+ L+K    A +DP+                   A RKR  D  E++  E          + P  LEGY K++R + EERL  ++ G+  F H    GG TN EK R KN++M++K  +     L+ T+  Q  K R VKG      R+A+KRRR
Sbjct:  567 RVDARRILTPKDFERIQMLKKEAVNAAKDPK-------------------ARRKRKADAVEKKALES-----NHSTVDPATLEGYSKKKRQTMEERLRSVLEGRENFNHKQKGGGTTNREKARLKNFLMLKKSLQVQSKVLKSTREIQHIKNRVVKGVTK---RDAKKRRR 710          
BLAST of EWM22817.1 vs. NCBI_GenBank
Match: gi|953491793|emb|CEG45802.1| (protein sda1 homolog isoform x1 [Plasmopara halstedii])

HSP 1 Score: 76.2554 bits (186), Expect = 1.216e-11
Identity = 54/169 (31.95%), Postives = 90/169 (53.25%), Query Frame = 0
Query:  167 RVEAQRVLSTEDFAQIRRLQKRFEEAKRDPRQVRGGGKTGKTEQVLLVKRAGRKRGRDVEEEEEEEGVGGGREGGMLRPEDLEGYKKRRRASKEERLMKIVSGKNTFEHAGHAGGLTNAEKKRKKNYMMVRKGKRDVFSKLRDTQQEQKARKVKGKKSEFAREARKRRR 335
            R++A+R+L+  DF +I  L+K  + A +DP+                  R+ RK         EE+      +   + P DLEGY K++R ++EERL  ++ G+  F+H    GG TN EKKR K++MM++K K  V SK+  + ++ + +K +  K     +A+KRR+
Sbjct:  555 RLDARRILTPLDFERIEMLKKERDAALKDPKS-----------------RSKRK--------AEEDAAKASSDATKVNPVDLEGYTKKKRMTQEERLRLVLEGREDFKHKRSGGGTTNTEKKRLKHFMMIKKSKA-VQSKVLVSARQVQRQKNRVVKKILKHDAKKRRK 697          
The following BLAST results are available for this feature:
BLAST of EWM22817.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103444|gb|EWM22817.1|0.000e+0100.00SDA1 family protein [Nannochloropsis gaditana][more]
gi|299470894|emb|CBN78843.1|1.743e-1737.79conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214711793|gb|OWZ22777.1|4.450e-1332.54hypothetical protein PHMEG_0002449 [Phytophthora m... [more]
gi|635370744|emb|CCI41007.1|6.524e-1334.30unnamed protein product [Albugo candida][more]
gi|806069124|gb|AKB91759.1|3.114e-1231.25SDA1 [Phytophthora capsici][more]
gi|1173950036|gb|OQR98020.1|5.394e-1234.71SDA1 family protein [Achlya hypogyna][more]
gi|675187851|ref|XP_008902810.1|5.650e-1231.95hypothetical protein PPTG_09551 [Phytophthora para... [more]
gi|570331971|gb|ETO79919.1|6.248e-1231.95hypothetical protein F444_05423 [Phytophthora para... [more]
gi|698798212|ref|XP_009832135.1|1.079e-1134.50hypothetical protein H257_08060 [Aphanomyces astac... [more]
gi|953491793|emb|CEG45802.1|1.216e-1131.95protein sda1 homolog isoform x1 [Plasmopara halste... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7878rna7878Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications