rna7878, rna7878 (mRNA) Nannochloropsis gaditana

Overview
Namerna7878
Unique Namerna7878
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length984
Alignment locationCM002475.1:52186..53626 +

Link to JBrowse

Properties
Property NameValue
ProductSDA1 family protein
Orig transcript idgnl|cribi|Naga_100437g1.4384.mrna
Orig protein idgnl|cribi|Naga_100437g1.4384
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002475.1supercontigCM002475.1:52186..53626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100437g1gene7631Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7878rna7878-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22817.1cds7856Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7878 ID=rna7878|Name=rna7878|organism=Nannochloropsis gaditana|type=mRNA|length=984bp
CAATGATTGACCGCACACTTGTTTTCCCATTCCGCTCTCATACGCAAGTC
TGCTTCTTGATCGACGCCCCGCCCAGGGTGCATAGAGGGCTGATGGCCGA
TACCATTCAAGGCCCGGGCGATGAAGTCGATCCACTCAAAAAGCATGAAA
ACCCGCTTTCCTCTTCCGCCAAAACTGAGGAAGGGGATGGCTCGGCGTTA
CCCGCATCTGATGAAAGCGGAGGGAGGGAGCAGGGGGACACATTTAAAAG
TTCAGGGACAGCACTGGTTAATGCTGGATCGGAGGCTTCTCAGCAAGCGG
GTAGTCAGAAGGAAGCAAGTACAGCATTTGGGGCGACAATGAAACGTCCA
CGGCCGGAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAGGAGTCTTCGGA
TGAGGAGGACGACGAGCAAGCGCACCTGTACACGGACCGGGAGGACAGGA
AACGGTTGAAGGCGATGACGGAGTTGGAGCGCGAGATGATCCTGGCGCAG
CGTAACGAGGAGTTTACCATGCGGCAACAGCAGGAGAAGTTGGAAATCAT
GGCGGAGACCCGCCGGAAAGAGGAGGAGAAAAAAGCCCGGCGAGCGGCGA
AAAGGGCGGGAAAGGCTGTGGAAGCGAGGGAGAAGAAGGAGGAGAAGGAG
GAGGAGGAGGTGAAAGAGGAGAAGAAGGAGGGGGATGACGCGGGTCCTGT
GGGGCTGGCCGACATCGTGGACGAGGAGAGCGATGAGGAAGGGAAAGAGG
AGGAGGAGGAGAGCGACGAGGAGATCGTGATGAGCAGCGATGAAGAGGAG
GGAGGCGAGGGGGAGGAGGCGGAGGGGGGGGCGAAAGGAGGAAGGGAAGG
AGGAAGAGGAGGAGAACGTGTATGACCCAGAGGCCAAGGTGGCCGAGCCT
GAGGAACTGGCCAAGCTGCAAGTCAAGCGCCATCACCTGGAGAAATGGAT
CGCGGAGCCCTGGTTCGCCGTGCGTCCTCCCTCC
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protein sequence of rna7878

>rna7878-protein ID=rna7878-protein|Name=rna7878|organism=Nannochloropsis gaditana|type=polypeptide|length=336bp
MSLGESGEEEDEEGLEDDWEEVEEEEEEEEEEEEEEWIDVSSASENGEEE
AGEGKEGVEDGEEEDGSEEEEEEEEVKGRGFGGNTMGGEEVNREETVGSE
KGEGEEAVRNSLTPTPPFPSTPVQSKRLKRAAKREAAHAARLQRQEKRAS
AALTSLIRPAGTDVMKRVEAQRVLSTEDFAQIRRLQKRFEEAKRDPRQVR
GGGKTGKTEQVLLVKRAGRKRGRDVEEEEEEEGVGGGREGGMLRPEDLEG
YKKRRRASKEERLMKIVSGKNTFEHAGHAGGLTNAEKKRKKNYMMVRKGK
RDVFSKLRDTQQEQKARKVKGKKSEFAREARKRRRC
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mRNA from alignment at CM002475.1:52186..53626+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7878 ID=rna7878|Name=rna7878|organism=Nannochloropsis gaditana|type=mRNA|length=1441bp|location=Sequence derived from alignment at CM002475.1:52186..53626+ (Nannochloropsis gaditana)
AATATTCTGGAACCGGGACGCGTCGAGCACACTTGTTATCGCTCATTAGG
CGCCGACCTCGCTCTCGGGACACCCacactcctttccttttcctgccttt
tccgCCGCATGTTCAGGAGAACTTAAGGTGCTGGACGGTGTGGAGGGTGC
AGAGCTACTTCAAGcatgggaagagggacgTCTGGAggtgccggaggagg
aggaggaggaggaggaggaggaggaggaggaggaggaggaagaggaggag
gagggagaggaggaggaggaggaagaggaggaggaggaggaaggagaaac
tGAGACGATGAGTTTGGGTGAgagtggagaggaagaggacgaagaggggc
tTGAGGACgattgggaggaggtggaagaggaggaggaggaggaggaggag
gaggaggaggaggaatggatcGATGTGTCATCTGCCTCCGAaaacggcga
ggaggaagcgggggaggggaaggagggggtggaggatggagaggaggagg
acggatcagaagaagaagaagaagaagaggaggtcaagGGAAGAGGGTTT
GGCGGCAAcacgatgggaggggaggaagtcaacagggaggagaccgtcgg
gagcgagaaaggagaaggcgaagaagctGTCCGGAACAGTCTCACCCCGA
CCCCACCTTTCCCGTCCACGCCTGTCCAGAGCAAGCGACTGAAACGCGCG
GCCAAGAGAGAGGCGGCCCATGCGGCCCGCCTACAGcggcaggagaagcg
ggcgAGTGCAGCCTTAACCTCCTTAATCCGCCCGGCGGGGACTGATGTCA
TGAAACGGGTGGAGGCTCAACGGGTGTTGTCCACGGAAGATTTCGCGCAA
ATTCGCAGGCTGCAGAAACGGttcgaggaggcgaagagggacCCCCGCCA
ggtacggggaggaggaaaaacaggGAAGACGGAGCAGGTGCTGTTGGTGa
agcgggcagggaggaagagagggagggatgtggaagaggaggaggaagag
gaaggggtggggggtgggcgcgagggagggatgttgCGGCCAGAAGACTT
GGAAGGCTATAAAAAGAGGCGTAGGGCCAGCAAGGAAGAGCGGTTGATGA
AGATCGTGTCGGGAAAGAACACCTTCGAGCACGCGGGCCACGCCGGGGGG
TTGACAAATGccgagaagaagcggaaaaagAATTACATGATggtgaggaa
agggaagagggacgtCTTTTCCAAGCTGCGGGATACTCAACAGGAGCAAA
AAGCGCGAAaagtgaaggggaagaagagtgaGTTTGCAAGGGAGGCGCGC
AAGCGGCGGCGTTGCTAATGCCATCGACCATTGGGGGAGAAAACTGGGAA
GGCAATTAATTCCGTGCCAAGAGAGGATATGTTTGCTCTGAAGCAGACAA
TAGAAAAGAAAATAGAAAAGAAAGTACGCTACAATGTGTGT
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Coding sequence (CDS) from alignment at CM002475.1:52186..53626+

>rna7878 ID=rna7878|Name=rna7878|organism=Nannochloropsis gaditana|type=CDS|length=1011bp|location=Sequence derived from alignment at CM002475.1:52186..53626+ (Nannochloropsis gaditana)
ATGAGTTTGGGTGAgagtggagaggaagaggacgaagaggggctTGAGGA
Cgattgggaggaggtggaagaggaggaggaggaggaggaggaggaggagg
aggaggaatggatcGATGTGTCATCTGCCTCCGAaaacggcgaggaggaa
gcgggggaggggaaggagggggtggaggatggagaggaggaggacggatc
agaagaagaagaagaagaagaggaggtcaagGGAAGAGGGTTTGGCGGCA
Acacgatgggaggggaggaagtcaacagggaggagaccgtcgggagcgag
aaaggagaaggcgaagaagctGTCCGGAACAGTCTCACCCCGACCCCACC
TTTCCCGTCCACGCCTGTCCAGAGCAAGCGACTGAAACGCGCGGCCAAGA
GAGAGGCGGCCCATGCGGCCCGCCTACAGcggcaggagaagcgggcgAGT
GCAGCCTTAACCTCCTTAATCCGCCCGGCGGGGACTGATGTCATGAAACG
GGTGGAGGCTCAACGGGTGTTGTCCACGGAAGATTTCGCGCAAATTCGCA
GGCTGCAGAAACGGttcgaggaggcgaagagggacCCCCGCCAggtacgg
ggaggaggaaaaacaggGAAGACGGAGCAGGTGCTGTTGGTGaagcgggc
agggaggaagagagggagggatgtggaagaggaggaggaagaggaagggg
tggggggtgggcgcgagggagggatgttgCGGCCAGAAGACTTGGAAGGC
TATAAAAAGAGGCGTAGGGCCAGCAAGGAAGAGCGGTTGATGAAGATCGT
GTCGGGAAAGAACACCTTCGAGCACGCGGGCCACGCCGGGGGGTTGACAA
ATGccgagaagaagcggaaaaagAATTACATGATggtgaggaaagggaag
agggacgtCTTTTCCAAGCTGCGGGATACTCAACAGGAGCAAAAAGCGCG
AAaagtgaaggggaagaagagtgaGTTTGCAAGGGAGGCGCGCAAGCGGC
GGCGTTGCTAA
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Synonyms
Publications