rna7862, rna7862 (mRNA) Nannochloropsis gaditana

Overview
Namerna7862
Unique Namerna7862
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1312
Alignment locationCM002475.1:5662..7381 +

Link to JBrowse

Properties
Property NameValue
Product2og-fe oxygenase
Orig transcript idgnl|cribi|Naga_100632g2.1391.mrna
Orig protein idgnl|cribi|Naga_100632g2.1391
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002475.1supercontigCM002475.1:5662..7381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100632g2gene7615Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7862rna7862-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22833.1cds7840Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7862 ID=rna7862|Name=rna7862|organism=Nannochloropsis gaditana|type=mRNA|length=1312bp
ATGTCGTGCTGTTACGCATCGTAGCTGCCCAAATGGCAATAAGATACCTA
TGTTAGCTTTGACTGGTTTCGACAAATAGCACGACTTATCAAAGACCTCC
GTAACCTCGCTCTCCCTGTGTTTGAAAAGGTAGTAAACCTAATGTGTCAT
TCTCCCGTCGCCGACCCTGCATCAATGTTCTGTCGGCCTTTTCCCCCGAT
GAGGCATCCTATGTCATCCGGAGCACCTTTTACGACGTTGGGCGGCTTGT
AGCGCCTCAAGTCTAACGAGCTCGCCAGCACAGAGACACTGGAAAGAGGT
CTAGCTGCCCCTGCGATGTATGGTGGGATGGTAGTGCGCAGCCAGGGCAA
CAGTAAGACTGCAGTCGAAGGAATGCCTACAACGTAATATAACAAGGTCA
AGACCAGATTCAATTAGATGCGACGGACAATGTGCGGCCGCGCTGCGACA
CGTGCATGGAGAAAGGCTACTCCTTCGGCAGGTTCCAGAAGAAGTCGAGG
GAGACCGAGGCGGCTATGAAGCAGCGGTGGTACCAGCGCGTGGCGGCGAT
GGAGGCGACGGTGGGCCGGCTGCAGGTGAAGCGGACCCAGAGGGTGTGGG
AGGGCCACGAAGCACTCTTGAGTGGCGGGGGGGGGAGGGGAAGGGCGCTG
GCGGTGGCGGTAGCAGCAGGAGTGACGACAGCAGCGAGAACGCGAGCAGC
AAGGAGATGGAGGAGGCGGACGGAGGAGGAGTGGATGGAATGCACGAGGA
TAGAAAGGCGTAGCTTTTCGCGTCGTTCTTCGAGCCAGAGGATGCAGGCC
GGGACGGCGGGGAGCACAGCGACGAGGACGCGGCGGCGGCGGGCGCAGCG
GGTGGTTGGGCCGTTGGGGCCAGCGCGGGGGTGCAGCGGGAAGGGAAGGA
GATGGAGCAGGAGAGGGAGCAGGAGTAGGAGGCTGATGTGGCTGCAGCTG
CTGAAGGGGATGGGGCTCAGGGGGTTGGAGGGGGTGAGGAGGAGCAGTAG
GAAAGGCTTTCTGCTACTGCGAGACAGCGTATGACCCTGAGGAGGAGAGG
GGGATGGTGGAGTGCGGCGGCTTCAAAAATGGGTATCATTATGAGTGCAT
TGAGGACAATAAGGGGAAGGGATCGCGGAAGGCGGCAGAGGCTGATGGGA
GCAGCGAGACGACGCAGTGGTCCTGCCGACGCGACTCCAAGAGCAAGGCA
AAGAACACGTAGTTAGGGATGAGGGAGCCAGGACAAGGAACAGGATGGAC
TATGCTTACAATATAACTTTTCTAATATATTGTGCAGATTAGTTGTTGTT
TAGACTCATTCC
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protein sequence of rna7862

>rna7862-protein ID=rna7862-protein|Name=rna7862|organism=Nannochloropsis gaditana|type=polypeptide|length=474bp
MNPSTASSITSSVWTPIRVDLVPFLPNSSPSEGAKLAAAQAIRQACETDG
LFLLDYRGWVRTRDVLRVAGPAPSFDIGTTSGGAGKSRSSNRSTEKHVAA
ETDDSKEAIDHTCMKACGPINRRRLSSYPRVLDAIASFFALPLQEKEALP
SLHSQGFSRGYIPVLGESGLKGQFVEWKEGFSMGYESADGGEEGSSEGAR
DPSAGAAWGQRERADVATRRASSLSPSPQNPLEGPNVWPTSSTALAALRG
GGTGKGGTAWREEMQAFFVDMIALSRALSRALSLALGREEGWLEAVCGEG
GERISLLRAFHYMSSSSLPPSIPPSRALGSSPHTDWGLFTIILQQRQESI
GEEEGDEEEGGLQFRGRPQGARVEAGEEGEELEWVRVPWVAETLIVNCGD
FLAMLSERLVAEGKARAGGRREGGREGASERGRRPFHSPVHRVTLSPSRD
RTSLVFFFYPSYDTPMPAAGREGL
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mRNA from alignment at CM002475.1:5662..7381+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7862 ID=rna7862|Name=rna7862|organism=Nannochloropsis gaditana|type=mRNA|length=1720bp|location=Sequence derived from alignment at CM002475.1:5662..7381+ (Nannochloropsis gaditana)
CCAAGTACACCAAGTTATCGGCGAGAAATGTGTCCTTCAGTCGTTCGCAA
GTACGGAGAGGCCTTCCCATCCATTCTCGTTCATCATGACGTACTGTTAG
ACGCTTAAACAACCCCTGACCCCCTTTTTCTACATTGAGAAAAGGTTCGG
TGCCTTCTGGACACCTCGCAGTGGAAGGTGCCTCAACCACGGCGTGAGCT
ATCGGATCTTATCGTGGCGACCCGGCGTTATCTGCGATTTTTCCTACGGT
GCCTTCTATTTCGTTTTAACAAATAGAAATGCAGGCGCTCCTTTTCTAAT
GAATCCATCCACCGCTTCAAGCATAACCTCCTCAGTATGGACACCTATTC
GGGTAGATCTCGTCCCGTTCCTGCCTAATTCCTCGCCCAGTGAGGGTGCG
AAGCTCGCAGCTGCGCAGGCCATTCGTCAGGCCTGCGAGACCGATGGTCT
CTTTCTCCTAGATTATAGAGGATGGGTTCGGACACGAGATGTTCTAAGAG
TCGCAGGACCCGCCCCTAGCTTTGATATAGGAACAACAAGTGGCGGTGCG
GGGAAATCGAGGTCATCCAACCGCTCAACGGAGAAACATGTGGCAGCGGA
GACGGACGACAGCAAAGAAGCAATTGATCACACGTGCATGAAGGCATGCG
GGCCTATTAACCGTCGAAGACTTTCATCGTATCCTCGCGTCTTGGATGcc
atcgcttccttcttcgctcTGCCCctgcaagagaaagaggccctgccctc
ccttcactcGCAAGGCTTTTCACGCGGCTACATTCCTGTcttgggggaaa
gcgggttAAAGGGACAATTTGTcgagtggaaggagggcttcagCATGGGT
TACGAGTCTgccgacggaggggaagaggggagcagcgaaggggcgaggga
ccCTTCGGCCGGTGCCGCCTGGGgtcagagggagagagctGATGTCGCGA
CAAGGAGAGCCAGCtcgctctcgccctcccctcaaAACCCATTGGAAGGT
CCCAATGTCTGGCCTACATCCTCCACTGCCCTCGCTGCCctccggggggg
cgggaccgggaaaggagggacggccTGGAGAGAAGAGATGCAAGCTTTCT
TTGTGGACATGATCGCCCTCAGCCGGGCCCTTTCCCgggccctctctctc
gccctgggcagggaggaaggctggcTAGAAGCAGTgtgcggggagggtgg
ggaacgcatctccctcctgcgtGCCTTCCACTAcatgtcgtcctcttccc
tccctccgtccatccccccctctaGGGCACTGGGCTCGAGCCCTCACACG
GACTGGGGCCTGTTCACCATCATCCTCCAGCAGAGACAGGAGTCGatagg
ggaagaggagggcgacgaggaggagggaggcctgcaATTTCGAGGGCGGC
CGCAGGGAGCGCGGGTggaagcaggagaggagggagaggagttgGAGTGG
GTGAGAGTGCCGTGGGTGGCGGAAACTTTGATCGTGAACTGCGGGGATTT
CCTAGCCATGCTTTCGGAGAGATTAGTGGCTGAGGGCAAAGCccgggcag
gaggacggagggagggaggaagggagggagcgagcgaaagagggagacgg
cccTTCCATTCACCTGTCCACAGGGTGACACTCTCCCCGAGCCGGGATCG
GACCTCTCTCGTATTCTTTTTCTACCCCTCCTACGATACACCCATGCCGG
ctgcggggcgggaggggttg
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Coding sequence (CDS) from alignment at CM002475.1:5662..7381+

>rna7862 ID=rna7862|Name=rna7862|organism=Nannochloropsis gaditana|type=CDS|length=1422bp|location=Sequence derived from alignment at CM002475.1:5662..7381+ (Nannochloropsis gaditana)
ATGAATCCATCCACCGCTTCAAGCATAACCTCCTCAGTATGGACACCTAT
TCGGGTAGATCTCGTCCCGTTCCTGCCTAATTCCTCGCCCAGTGAGGGTG
CGAAGCTCGCAGCTGCGCAGGCCATTCGTCAGGCCTGCGAGACCGATGGT
CTCTTTCTCCTAGATTATAGAGGATGGGTTCGGACACGAGATGTTCTAAG
AGTCGCAGGACCCGCCCCTAGCTTTGATATAGGAACAACAAGTGGCGGTG
CGGGGAAATCGAGGTCATCCAACCGCTCAACGGAGAAACATGTGGCAGCG
GAGACGGACGACAGCAAAGAAGCAATTGATCACACGTGCATGAAGGCATG
CGGGCCTATTAACCGTCGAAGACTTTCATCGTATCCTCGCGTCTTGGATG
ccatcgcttccttcttcgctcTGCCCctgcaagagaaagaggccctgccc
tcccttcactcGCAAGGCTTTTCACGCGGCTACATTCCTGTcttggggga
aagcgggttAAAGGGACAATTTGTcgagtggaaggagggcttcagCATGG
GTTACGAGTCTgccgacggaggggaagaggggagcagcgaaggggcgagg
gaccCTTCGGCCGGTGCCGCCTGGGgtcagagggagagagctGATGTCGC
GACAAGGAGAGCCAGCtcgctctcgccctcccctcaaAACCCATTGGAAG
GTCCCAATGTCTGGCCTACATCCTCCACTGCCCTCGCTGCCctccggggg
ggcgggaccgggaaaggagggacggccTGGAGAGAAGAGATGCAAGCTTT
CTTTGTGGACATGATCGCCCTCAGCCGGGCCCTTTCCCgggccctctctc
tcgccctgggcagggaggaaggctggcTAGAAGCAGTgtgcggggagggt
ggggaacgcatctccctcctgcgtGCCTTCCACTAcatgtcgtcctcttc
cctccctccgtccatccccccctctaGGGCACTGGGCTCGAGCCCTCACA
CGGACTGGGGCCTGTTCACCATCATCCTCCAGCAGAGACAGGAGTCGata
ggggaagaggagggcgacgaggaggagggaggcctgcaATTTCGAGGGCG
GCCGCAGGGAGCGCGGGTggaagcaggagaggagggagaggagttgGAGT
GGGTGAGAGTGCCGTGGGTGGCGGAAACTTTGATCGTGAACTGCGGGGAT
TTCCTAGCCATGCTTTCGGAGAGATTAGTGGCTGAGGGCAAAGCccgggc
aggaggacggagggagggaggaagggagggagcgagcgaaagagggagac
ggcccTTCCATTCACCTGTCCACAGGGTGACACTCTCCCCGAGCCGGGAT
CGGACCTCTCTCGTATTCTTTTTCTACCCCTCCTACGATACACCCATGCC
GGctgcggggcgggaggggttg
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Synonyms
Publications