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Properties
Property Name | Value |
Product | intraflagellar transport particle protein ift140 |
Orig transcript id | gnl|cribi|Naga_100341g5.8453.mrna |
Orig protein id | gnl|cribi|Naga_100341g5.8453 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002474.1 | supercontig | CM002474.1:71560..73133 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7831 ID=rna7831|Name=rna7831|organism=Nannochloropsis gaditana|type=mRNA|length=1349bp ATGTGCGTGGACCTTACACTCTTTAAATCACTTCCATTGGCTATCCAGAC ACAATGCCCTCGTCGACTGCAAGCCAAGACTTTTCGGCCTCACCCACGGC AGAAGAATGGTTTGCGTCGGCCACCCGGGTGCCCCTCGTCATGCCTGGTG CTGAGAAGCAGATAATAAACATTTCCGCACATTTTTTCGCGCGTGGGAAT CCTGCAGCTACGTCCCTCTCTTTCTCTTCACTGCCCTCGCGTTCTCCGTC CTCTCCTGTCATCACCTTTATCCACGGATTTCCCACTTCCAGTCACGATT TCGCCTCCCTGCTCCCCGCCTTGGCCCCCATGGCGACCCTACTTTTGTGG GACATGTGGGGCTACGGTGATTCCGACAAGGAGCCGCTGGGCAAAGACCA GAGAGATGATGGAGGAGGAGGACAAAACATCGCAAGAGAAGATTTTAGCG TTTTCAGCCAGGCAGATCTACTTGAGGCACTGTGGAGTCACTTCGGCATC GGCGAAACGCACATCGTTTGCCACGATCTCGGCGACACTGTATTACAAGA ACTCGCAGCACGTGGTCGGGCGAGGCAACTGGGGAGCGAGCAAGGGACGG AGACAAAAAGGACCGTGATACGTGACGTGTTCATGTTCAACGGGGGAATC TTCCCCCGCCTGCACAGACCCGTGCTCCTTCAAAACCTTCTCCTCGTCCC GGCCCTCGCGCCTTTTTTTTGCCGGTACTTGATGAACGAGTGGACCTTCA ACAAAGGTATCTGCGGGGTCTTCTCCCCGGCCCACCCTCCTTCTGCCGTC CTCCTCCATGACATGTGGACCGGGGTGCTTCGGAGGGAGGGTTATCGGCA CTACCATTTGCTGATCCGGTACCTGGTGGAGCGACAAAGGCACCAAACGC GGTGGGAGGAGGGCTTGGACTGGTTGGTGCGGGGCGGAGGTGGCAAGGGC CGCGTGCATTTTGAGTGGGGAAGTCGAGACCCCGTGTCCGGTGCCCACCT TGCCGTCGAGTTGCGGCGCCGGTACCAAGACCTGGGGCTAAGGCTGCTGG AGGGGGAGGAAGAAGGGGAAAGAGAAGGAAAAGGGAGGGCAATGGCGAGG GTAACATTGCGGGAGAAGGAGTTGGGGCACTGGCCGTTCCTGGAAGACGT GCCTGGGGCCCGGGGGGCCTTGCGTGCGTTTTTCCAGGGGGAAGGATGAA AGGGAGAGAGGTGGCGAGGATTATGGATTCGGGTGGCAAAGGAAGCGGTG CATGAAACAGCGCGGAAGCTTGCTCGGTGGGTAAAACGCGTGCGCGAGTT TGAAGACTTGTATATTAATAATAAAGTAAAAACCTTTGACACTTTCTCT back to topprotein sequence of rna7831 >rna7831-protein ID=rna7831-protein|Name=rna7831|organism=Nannochloropsis gaditana|type=polypeptide|length=421bp MPSFAGLSYENFSLHAKSCLKAFHFQLFSQDWHAAHQSLRIIFPQRQPDS KAGKKCQNEEPNDHNQQLRKEGNCKQQLLCIWRNMAHLSLRNRRVEVAEH CLSYMGHIRGVHAVREAVSSPSLYPSLPSLTSSTCSTDIPLGMVAIQLGL LQEAAALYIRAKRFDLLNRMYQAAGKWEKALQVAEKDDRLHLRTTHFQYA RRLERMSEWDKAIFHYEKAGAQAREVPRMLHKAGKIEDLEKYLSRQKSTV ADRESGDAKMLWRWWGRYCESKRDVKAAKEAYRKAADLVALVRLACVAQD VGAAEALLDDKDAGALHQGEISWRQASNHAMKAAASYHLARHYEGALYDV LPALTHYARAGCFKHCIRLAKAHELDNDVMQYALQSGQADLMQDSAQYFL KLDQSERAQELIGKARKMRES back to topmRNA from alignment at CM002474.1:71560..73133+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7831 ID=rna7831|Name=rna7831|organism=Nannochloropsis gaditana|type=mRNA|length=1574bp|location=Sequence derived from alignment at CM002474.1:71560..73133+ (Nannochloropsis gaditana) TCCCCAGTCCCCCCACTCCGTCCACCCCCCCTTCGTCGCTTATTGTTGCG
CAAATAATGCCAAGTTTTGCCGGCTTGAGTTACGAAAATTTCTCTCTCCA
CGCCAAATCGTGCCTCAAGGCCTTTCACTTCCAATTGTTTTCGCAAGACT
GGCACGCGGCTCACCAATCTTTGAGAATCATCTTTCCTCAGCGGCAACCC
GATAGcaaggcgggaaaaaaatgccAGAACGAGGAGCCCAACGACCACAA
CCAACAACtgcggaaagaggggaatTGTAAGCAACAGCTACTCTGCATCT
GGCGCAACATGGCTCATCTCTCTTTACGGAATCGTCGCGTTGAAGTCGCC
GAGCACTGTTTAAGCTACATGGGCCACATCCGAGGTGTGCATGCCGTTCG
AGAAGCTGTGTCTAGCCCCTCTCtttacccctcccttccttccttgacct
cctccacgtgctcTACGGACATTCCCCTTGGGATGGTTGCCATCCAGCTT
GGCCTGCTTCAGGAAGCAGCTGCTCTTTACATCCGTGCAAAACGTTTCGA
TCTCCTCAATCGCATGTACCAGGCGGCAGGAAAATGGGAGAAGGCTTTAC
AGGTAGCTGAGAAAGATGATAGGTTACATCTTCGCACAACCCACTTTCAG
TACGCCCGGCGCTTGGAAAGGATGAGTGAATGGGATAAGGCGATCTTTCA
CTATGAGAAGGCAGGAGCACAGGCGCGGGAGGTGCCAAGGATGTTGCACA
AAGCAGGAAAAATCGAAGATTTGGAAAAATACCTGTCGAGACAGAAGTCG
ACAGTAGCAGACCGAGAATCTGGAGACGCAAAGATGCTTTGGCGTTGGTG
GGGAAGGTATTGTGAGTCAAAGAGAGACGTAAAAGCTGCAAAGGAGGCGT
ACCGGAAGGCGGCAGACCTGGTGGCTCTGGTGAGACTCGCCTGCGTTGCC
CAAGATGTGGGTGCTGCAGAAGCGTTGTTGGATGACAAAGATGCCGGGGC
ATTACATCAAGGTGAAATATCCTGGAGACAGGCCTCCAACCACGCAATGA
AAGCCGCGGCTTCCTATCACCTCGCCCGTCACTATGAGGGAGCCCTCTAC
GATGTTCTTCCCGCTCTCACCCACTACGCGCGTGCAGGATGTTTCAAGCA
CTGTATACGTTTAGCCAAGGCGCATGAGCTCGACAATGACGTCATGCAAT
ATGCCTTACAAAGCGGGCAGGCCGACCTAATGCAAGATAGCGCCCAATAT
TTCCTGAAACTGGACCAGAGTGAAAGAGCACAGGAGTTGATAGGCAAGGC
CAGAAAAATGCGAGAATCTTGACCCAGGGAGATGTTGTGAATTTaattaa
aaaaggaaagtagTTCAAAACAAAGAAGGAAACGATAAATGCCGGATTAA
GGGAAGTTGACCCAATCGTCATGACACTCCGCGGCATACTATGTTCTGCC
AGTCTTAGTGTTATTAAGCCTACTTTTATTGCTCATCGCATTCCTTACCA
AGAAAAGAATTTACGCATGTTTATAGTCGCCCAGAGAGCCATACAGACAA
AGTACAAACGTCAAAAATCAAACT back to topCoding sequence (CDS) from alignment at CM002474.1:71560..73133+ >rna7831 ID=rna7831|Name=rna7831|organism=Nannochloropsis gaditana|type=CDS|length=1266bp|location=Sequence derived from alignment at CM002474.1:71560..73133+ (Nannochloropsis gaditana) ATGCCAAGTTTTGCCGGCTTGAGTTACGAAAATTTCTCTCTCCACGCCAA ATCGTGCCTCAAGGCCTTTCACTTCCAATTGTTTTCGCAAGACTGGCACG CGGCTCACCAATCTTTGAGAATCATCTTTCCTCAGCGGCAACCCGATAGc aaggcgggaaaaaaatgccAGAACGAGGAGCCCAACGACCACAACCAACA ACtgcggaaagaggggaatTGTAAGCAACAGCTACTCTGCATCTGGCGCA ACATGGCTCATCTCTCTTTACGGAATCGTCGCGTTGAAGTCGCCGAGCAC TGTTTAAGCTACATGGGCCACATCCGAGGTGTGCATGCCGTTCGAGAAGC TGTGTCTAGCCCCTCTCtttacccctcccttccttccttgacctcctcca cgtgctcTACGGACATTCCCCTTGGGATGGTTGCCATCCAGCTTGGCCTG CTTCAGGAAGCAGCTGCTCTTTACATCCGTGCAAAACGTTTCGATCTCCT CAATCGCATGTACCAGGCGGCAGGAAAATGGGAGAAGGCTTTACAGGTAG CTGAGAAAGATGATAGGTTACATCTTCGCACAACCCACTTTCAGTACGCC CGGCGCTTGGAAAGGATGAGTGAATGGGATAAGGCGATCTTTCACTATGA GAAGGCAGGAGCACAGGCGCGGGAGGTGCCAAGGATGTTGCACAAAGCAG GAAAAATCGAAGATTTGGAAAAATACCTGTCGAGACAGAAGTCGACAGTA GCAGACCGAGAATCTGGAGACGCAAAGATGCTTTGGCGTTGGTGGGGAAG GTATTGTGAGTCAAAGAGAGACGTAAAAGCTGCAAAGGAGGCGTACCGGA AGGCGGCAGACCTGGTGGCTCTGGTGAGACTCGCCTGCGTTGCCCAAGAT GTGGGTGCTGCAGAAGCGTTGTTGGATGACAAAGATGCCGGGGCATTACA TCAAGGTGAAATATCCTGGAGACAGGCCTCCAACCACGCAATGAAAGCCG CGGCTTCCTATCACCTCGCCCGTCACTATGAGGGAGCCCTCTACGATGTT CTTCCCGCTCTCACCCACTACGCGCGTGCAGGATGTTTCAAGCACTGTAT ACGTTTAGCCAAGGCGCATGAGCTCGACAATGACGTCATGCAATATGCCT TACAAAGCGGGCAGGCCGACCTAATGCAAGATAGCGCCCAATATTTCCTG AAACTGGACCAGAGTGAAAGAGCACAGGAGTTGATAGGCAAGGCCAGAAA AATGCGAGAATCTTGA back to top
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