EWM22861.1, cds7807 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|585103508|gb|EWM22861.1| (RNA binding protein [Nannochloropsis gaditana]) HSP 1 Score: 1015.76 bits (2625), Expect = 0.000e+0 Identity = 532/532 (100.00%), Postives = 532/532 (100.00%), Query Frame = 0 Query: 1 MGKSSKSKADKTLGADVVVQSKGGSAEGTKAVGKKGKKAAKPVEPSSSSSSDSSSDEETAPTTNGTAGKKGGKVVAKPVAASSDSDDDSSSSSSEDEAPAPKKATPAAGKKEKLTKKKAAPESSDSDDSGSESDDSSDEEEAAVKPATPARGKTTAPSKKAEPESSSSESSDSSDEEEEEVVAAKPKAAEESSDESSSDSEEEEEEEEEEEKAATKAESSESGSESSSSEEDEDEDEDEEEEETAVAASKKRKGGEEGGQEKKKSKGAASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPRPPREGGFGGGGRGGGRGGGRGGGRSFGGGGGGGFGGGRGGGRGGGRGGGRGGGRDGAINKNRGSIQAFAGNKKTFDD 532 MGKSSKSKADKTLGADVVVQSKGGSAEGTKAVGKKGKKAAKPVEPSSSSSSDSSSDEETAPTTNGTAGKKGGKVVAKPVAASSDSDDDSSSSSSEDEAPAPKKATPAAGKKEKLTKKKAAPESSDSDDSGSESDDSSDEEEAAVKPATPARGKTTAPSKKAEPESSSSESSDSSDEEEEEVVAAKPKAAEESSDESSSDSEEEEEEEEEEEKAATKAESSESGSESSSSEEDEDEDEDEEEEETAVAASKKRKGGEEGGQEKKKSKGAASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPRPPREGGFGGGGRGGGRGGGRGGGRSFGGGGGGGFGGGRGGGRGGGRGGGRGGGRDGAINKNRGSIQAFAGNKKTFDD Sbjct: 1 MGKSSKSKADKTLGADVVVQSKGGSAEGTKAVGKKGKKAAKPVEPSSSSSSDSSSDEETAPTTNGTAGKKGGKVVAKPVAASSDSDDDSSSSSSEDEAPAPKKATPAAGKKEKLTKKKAAPESSDSDDSGSESDDSSDEEEAAVKPATPARGKTTAPSKKAEPESSSSESSDSSDEEEEEVVAAKPKAAEESSDESSSDSEEEEEEEEEEEKAATKAESSESGSESSSSEEDEDEDEDEEEEETAVAASKKRKGGEEGGQEKKKSKGAASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPRPPREGGFGGGGRGGGRGGGRGGGRSFGGGGGGGFGGGRGGGRGGGRGGGRGGGRDGAINKNRGSIQAFAGNKKTFDD 532
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|570938807|gb|ETP04064.1| (hypothetical protein F441_19082, partial [Phytophthora parasitica CJ01A1]) HSP 1 Score: 206.838 bits (525), Expect = 8.844e-59 Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0 Query: 248 ASKKRKG---GEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455 SKKRK GE+ + +K+ G A+P + ++F+ GLPWSATE+EV+ F CG +T+ +PL++GRSSGTA++ F + A+AM+ + FG GRW+++R E K M EKP+GC S+FIGNL+W++DE T+R FA CGE+TS R ATDRETGEFRGFGHVDFA A + AV++AG+ V GR IRV+YA+ R Sbjct: 34 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAEK--------KNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 233
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|675176541|ref|XP_008897155.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566011284|gb|ETI34195.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567948826|gb|ETK74564.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567977483|gb|ETL27985.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568036832|gb|ETM34434.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568102939|gb|ETN17610.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570969177|gb|ETP32296.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297]) HSP 1 Score: 207.223 bits (526), Expect = 4.007e-58 Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0 Query: 248 ASKKRKG---GEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455 SKKRK GE+ + +K+ G A+P + ++F+ GLPWSATE+EV+ F CG +T+ +PL++GRSSGTA++ F + A+AM+ + FG GRW+++R E K M EKP+GC S+FIGNL+W++DE T+R FA CGE+TS R ATDRETGEFRGFGHVDFA A + AV++AG+ V GR IRV+YA+ R Sbjct: 96 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 295
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|970641898|gb|KUF83782.1| (28 kDa ribonucleoprotein [Phytophthora nicotianae]) HSP 1 Score: 207.223 bits (526), Expect = 4.115e-58 Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0 Query: 248 ASKKRKG---GEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455 SKKRK GE+ + +K+ G A+P + ++F+ GLPWSATE+EV+ F CG +T+ +PL++GRSSGTA++ F + A+AM+ + FG GRW+++R E K M EKP+GC S+FIGNL+W++DE T+R FA CGE+TS R ATDRETGEFRGFGHVDFA A + AV++AG+ V GR IRV+YA+ R Sbjct: 97 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 296
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|568006989|gb|ETL81234.1| (hypothetical protein, variant 3 [Phytophthora parasitica]) HSP 1 Score: 207.223 bits (526), Expect = 4.358e-58 Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0 Query: 248 ASKKRK---GGEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455 SKKRK GE+ + +K+ G A+P + ++F+ GLPWSATE+EV+ F CG +T+ +PL++GRSSGTA++ F + A+AM+ + FG GRW+++R E K M EKP+GC S+FIGNL+W++DE T+R FA CGE+TS R ATDRETGEFRGFGHVDFA A + AV++AG+ V GR IRV+YA+ R Sbjct: 96 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 295
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|570315133|gb|ETO63081.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1976]) HSP 1 Score: 207.223 bits (526), Expect = 5.221e-58 Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0 Query: 248 ASKKRKG---GEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455 SKKRK GE+ + +K+ G A+P + ++F+ GLPWSATE+EV+ F CG +T+ +PL++GRSSGTA++ F + A+AM+ + FG GRW+++R E K M EKP+GC S+FIGNL+W++DE T+R FA CGE+TS R ATDRETGEFRGFGHVDFA A + AV++AG+ V GR IRV+YA+ R Sbjct: 96 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 295
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|567977482|gb|ETL27984.1| (hypothetical protein L916_18596 [Phytophthora parasitica]) HSP 1 Score: 209.149 bits (531), Expect = 7.834e-58 Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0 Query: 248 ASKKRK---GGEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455 SKKRK GE+ + +K+ G A+P + ++F+ GLPWSATE+EV+ F CG +T+ +PL++GRSSGTA++ F + A+AM+ + FG GRW+++R E K M EKP+GC S+FIGNL+W++DE T+R FA CGE+TS R ATDRETGEFRGFGHVDFA A + AV++AG+ V GR IRV+YA+ R Sbjct: 186 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 385
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|570969175|gb|ETP32294.1| (hypothetical protein F442_19044 [Phytophthora parasitica P10297]) HSP 1 Score: 209.92 bits (533), Expect = 1.581e-57 Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0 Query: 248 ASKKRK---GGEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455 SKKRK GE+ + +K+ G A+P + ++F+ GLPWSATE+EV+ F CG +T+ +PL++GRSSGTA++ F + A+AM+ + FG GRW+++R E K M EKP+GC S+FIGNL+W++DE T+R FA CGE+TS R ATDRETGEFRGFGHVDFA A + AV++AG+ V GR IRV+YA+ R Sbjct: 251 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 450
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|970656307|gb|KUF94336.1| (hypothetical protein AM588_10007027 [Phytophthora nicotianae]) HSP 1 Score: 209.534 bits (532), Expect = 1.735e-57 Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0 Query: 248 ASKKRK---GGEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455 SKKRK GE+ + +K+ G A+P + ++F+ GLPWSATE+EV+ F CG +T+ +PL++GRSSGTA++ F + A+AM+ + FG GRW+++R E K M EKP+GC S+FIGNL+W++DE T+R FA CGE+TS R ATDRETGEFRGFGHVDFA A + AV++AG+ V GR IRV+YA+ R Sbjct: 250 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 449
BLAST of EWM22861.1 vs. NCBI_GenBank
Match: gi|567948825|gb|ETK74563.1| (hypothetical protein L915_18691 [Phytophthora parasitica]) HSP 1 Score: 209.534 bits (532), Expect = 1.965e-57 Identity = 104/215 (48.37%), Postives = 142/215 (66.05%), Query Frame = 0 Query: 248 ASKKRK---GGEEGGQEKKKSKG----AASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPR 455 SKKRK GE+ + +K+ G A+P + ++F+ GLPWSATE+EV+ F CG +T+ +PL++GRSSGTA++ F + A+AM+ + FG GRW+++R E K M EKP+GC S+FIGNL+W++DE T+R FA CGE+TS R ATDRETGEFRGFGHVDFA A + AV++AG+ V GR IRV+YA+ R Sbjct: 251 VSKKRKNSDAGEKSNKVQKQENGDAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTAARIPLQNGRSSGTAFVTFATPEAAEAALAMDGQDFG--GRWMKIRTAE--------KKNMF-----DEKPDGCTSIFIGNLAWDVDENTVRETFAECGEITSCRLATDRETGEFRGFGHVDFATTEAVDEAVKLAGSYVNGRAIRVNYAKSR 450 The following BLAST results are available for this feature:
BLAST of EWM22861.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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