rna7827, rna7827 (mRNA) Nannochloropsis gaditana

Overview
Namerna7827
Unique Namerna7827
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length405
Alignment locationCM002474.1:63087..63871 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100341g1.8449.mrna
Orig protein idgnl|cribi|Naga_100341g1.8449
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:63087..63871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100341g1gene7583Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22863.1cds7806Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7827rna7827-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7827 ID=rna7827|Name=rna7827|organism=Nannochloropsis gaditana|type=mRNA|length=405bp
ATGCCCTATTGGCGCTCGCTCTCGCCGGCCGTCCCCCTTGTCGGCCAAGG
CCTCGCCTACAGCGCGTTTGCCGCCGTCCTCTGGCCCTCCGTGCCGTTTA
CCGTGCCAGAAGATCGGGTAGGGGTTGCCTACGGGCTCACCACCGCCATC
CAAAACGCCGGCCTGGCCCTCTTCCCGCTCATGGCGGCCGCAATATACAA
GGCTGCTGGCTCAGAGTACATCCCCCACGTCGAACTCCTCTTCGTCTACT
TGGCCGTGGTCGGACTCGCCTTTGGGCTTTGGCTGAACGTGCTGGACTCC
CGTGGAGGGGGTGGAGGTACCTGTGCCAGCTTCTTCCTCGCCCGTCTATG
TGTGACCGCAGGGATCAAGCGTGAGACATTGAAGGACCGTCTCTGGCACG
GATAG
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protein sequence of rna7827

>rna7827-protein ID=rna7827-protein|Name=rna7827|organism=Nannochloropsis gaditana|type=polypeptide|length=69bp
MPPTKLLQKSASSLRWVILLAASLLMLSNYFVYDIPASLKDLIRQNMGLD
KSEFEVRRKKKGVGRNISP
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mRNA from alignment at CM002474.1:63087..63871-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7827 ID=rna7827|Name=rna7827|organism=Nannochloropsis gaditana|type=mRNA|length=785bp|location=Sequence derived from alignment at CM002474.1:63087..63871- (Nannochloropsis gaditana)
TTCCGAGCAGGGACAAGGTGCGGACTCTTTTTGAATGGAAACATTGGGAT
TGCTGTCGGGGGTGTTGATATTTATTGCTGTCTGTGGCTGAAGCTATTAG
CCCTCTTCCACACCATTTATCAGGGAAATCATTCCGTTCATGTTCCTACA
TTGAACTCCTTGCACGTGTACGCTAAGTGGTGGAACAAGGCAATGCTTTT
TCCAGAAATGCTCGAGAGTCTTTGACCGCGACGATTCTGATGGCGCATTT
AAATTTCTTGTTTCCATCATTCCCCAATTTCTCTGTTCAGACCCTGATGC
CTCCGACAAAACTACTTCAGAAGTCCGCCTCGTCTCTACGATGGGTCATC
CTCCTGGCAGCATCGCTCCTAATGCTAAGCAATTACTTCGTGTATGACAT
TCCAGCCTCGTTGAAGGACTTGATTCGTCAAAACATGGGCCTGGACAAGA
GTGAATTCGAGGTACGAAGGAAAAAGAAGGGTGTAGGGAGGAACATATCA
CCCTAACACTCCCTCGCCTAGGGGTCGCTGGCGTGCGATTCTCAGCTAGC
GATCAAGAAATGTCCCTGCTTTTCCCAAAATTTGAACGCAGCTACAATGT
CCGCTAACAACCGTCGGCCGACGTCTTTGTACCCTTCCTCTACACCGTTT
ATTAACCCTAACCCTTCCCTGCAGCCCATGTATTCGCTCTTCTACACAGT
GTACTCCCTCCCCAACATCGTCCTTCCCTTTTTCGGGGGCATTTTTGTCG
ATAAATTTGGAGCACGCATTTGTCTAATCGGTCAG
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Coding sequence (CDS) from alignment at CM002474.1:63087..63871-

>rna7827 ID=rna7827|Name=rna7827|organism=Nannochloropsis gaditana|type=CDS|length=210bp|location=Sequence derived from alignment at CM002474.1:63087..63871- (Nannochloropsis gaditana)
ATGCCTCCGACAAAACTACTTCAGAAGTCCGCCTCGTCTCTACGATGGGT
CATCCTCCTGGCAGCATCGCTCCTAATGCTAAGCAATTACTTCGTGTATG
ACATTCCAGCCTCGTTGAAGGACTTGATTCGTCAAAACATGGGCCTGGAC
AAGAGTGAATTCGAGGTACGAAGGAAAAAGAAGGGTGTAGGGAGGAACAT
ATCACCCTAA
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Synonyms
Publications