rna7816, rna7816 (mRNA) Nannochloropsis gaditana

Overview
Namerna7816
Unique Namerna7816
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1220
Alignment locationCM002474.1:41822..43356 -

Link to JBrowse

Properties
Property NameValue
ProductWW/Rsp5/WWP
Orig transcript idgnl|cribi|Naga_100676g2.10429.mrna
Orig protein idgnl|cribi|Naga_100676g2.10429
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:41822..43356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100676g2gene7572Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7816rna7816-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22877.1cds7795Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7816 ID=rna7816|Name=rna7816|organism=Nannochloropsis gaditana|type=mRNA|length=1220bp
CAGACAACAGACGAGGGTTGAGTGTCCACATCTTCCGCGCGCATTCATGC
TCAGCAGGCTGTGTTAGTCATGAATATGAAGCCATCTCTTTCCCTCTTGT
CTTTCTTCTTAAACCTCCTGATGATCTTACTTCCCTCCTTCCCTCTAACC
TATCGCTTCCAGACCGGTACACACTCGACAGAGTCCCTGAGGAAGCGTGA
AAAGATGGCGGGACGTGGACGCGGCAGGGGTATGACGTTGCCAGCGTGGA
TGACTAAAGAAGGTGGGCCGACCCAGACTGCGGAGGCGCGCAGCAGCAGC
AATGGCGACCACAGTGGCAGCAATACAAATCCTCTCGGGGGACTCCAAGA
CCATGTCTCCACTACGAATGTGCCCCAGGGAGGCCGACGGTCCAGATGGG
AAGCTGATCAGCCTTCCCAGGCTGCCCTTCCTACATCGGCTCCCGCCCAA
CATTCCAGTATCAAACAAGCACCGACGCCCCCCCCAGCGCGAGCAGCCTC
CCCTTCTCCTGCCAATGCCAATCCTACGACCATCAGCGCGCCGCCAGTGC
TGGGAGCTGCACCGTCCTCAACCACACCGGCCTCGGGCGAAGGCACCGCT
TTGGCATCTGCGGCCTATGGGAGCTTATCCACGTCTGGAACCAATGCTCC
CACCGCCAGCACGGCGGGCTATCCGCAAATGCACATGCAGCATCAGCAGG
CCTACGGCAACTGGCAACATCCCCTCCAGCACCCTCAGGGTCAACAAGAC
TACTACCACCAGTATTACCAGCAGCAGCAAATGCAGCAGCACCAGCAGTA
CTATGCCCAGGCGCAACAAGCGGCTGCCTACGCCGCTGCCATGCCTCCTG
CTCCTGCCCCAGCGCCCGCTTCGGCCCCTCCACCGGTACCTCCTGAAATC
GCGGACAATGTGGAGGAGGGCTATCAACCCGTCTACGACCCCAAGACCCA
GTACTGGTATTTTTGGAACGCGGCGTCCAATCAGGTCACGTGGGAGAAGC
CTTTGAAAGACAAGAGCAAGGCATTTGTGCCCCCCCCGCCACCGGGATCG
CCACCCAAATGAGAAAGGAGGGGAGGAGGGGAAACGGAAAGGAAGAATGG
GGTAGGGCGCCCGGGGGAAGGATGGTAACATTCCGGCACGACAAGGACAT
GAACTGGTGCCAATCTTGTGGTTGTTTCTTTTCATTCTTACTTCGTGCCA
CAATGCCAAACACATCCCGG
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protein sequence of rna7816

>rna7816-protein ID=rna7816-protein|Name=rna7816|organism=Nannochloropsis gaditana|type=polypeptide|length=270bp
MTKEGGPTQTAEARSSSNGDHSGSNTNPLGGLQDHVSTTNVPQGGRRSRW
EADQPSQAALPTSAPAQHSSIKQAPTPPPARAASPSPANANPTTISAPPV
LGAAPSSTTPASGEGTALASAAYGSLSTSGTNAPTASTAGYPQMHMQHQQ
AYGNWQHPLQHPQGQQDYYHQYYQQQQMQQHQQYYAQAQQAAAYAAAMPP
APAPAPASAPPPVPPEIADNVEEGYQPVYDPKTQYWYFWNAASNQVTWEK
PLKDKSKAFVPPPPPGSPPK
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mRNA from alignment at CM002474.1:41822..43356-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7816 ID=rna7816|Name=rna7816|organism=Nannochloropsis gaditana|type=mRNA|length=1535bp|location=Sequence derived from alignment at CM002474.1:41822..43356- (Nannochloropsis gaditana)
CAGACAACAGACGAGGGTTGAGTGTCCACATCTTCCGCGCGCATTCATGC
TCAGCAGGCTGTGTTAGTCATGAATATGAAGCCATCTCTTTCCCTCTTGT
CTTTCTTCTTAAACCTCCTGATGATCTTACTTCCCTCCTTCCCTCTAACC
TATCGCTTCCAGACCGGTACACACTCGACAGAGTCCCTGAGGAAGCGTGA
AAAGATGGCGGGACGTGGACGCGGCAGGGGTATGACGTTGCCAGCGTAAG
TACATAGGGCTTGGCCTTCCTTTTTTGTCGGCCTCACTCACGACACTCGA
CCTCTCTCATCTGCCCCTCCATTTCGTCGCTGCCGAACTGATCTGTCCGA
GGACGGGGAAATTCACGTGTCACCCGTCCTTCGATGATTTTAAGAAAGTG
AAGATGTGAAATGTAGATGCCTAGAATGCAATGCACTGACGCGTATTTTA
AAACTTCAGGTGGATGACTAAAGAAGGTGGGCCGACCCAGACTGCGGAGG
CGCGCAGCAGCAGCAATGGCGACCACAGTGGCAGCAATACAAATCCTCTC
GGGGGACTCCAAGACCATGTCTCCACTACGAATGTGCCCCAGGGAGGCCG
ACGGTCCAGATGGGAAGCTGATCAGCCTTCCCAGGCTGCCCTTCCTACAT
CGGCTCCCGCCCAACATTCCAGTATCAAACAAGCACCGACGCCCCCCCCA
GCGCGAGCAGCCTCCCCTTCTCCTGCCAATGCCAATCCTACGACCATCAG
CGCGCCGCCAGTGCTGGGAGCTGCACCGTCCTCAACCACACCGGCCTCGG
GCGAAGGCACCGCTTTGGCATCTGCGGCCTATGGGAGCTTATCCACGTCT
GGAACCAATGCTCCCACCGCCAGCACGGCGGGCTATCCGCAAATGCACAT
GCAGCATCAGCAGGCCTACGGCAACTGGCAACATCCCCTCCAGCACCCTC
AGGGTCAACAAGACTACTACCACCAGTATTACCAGCAGCAGCAAATGGTA
CGTCCTCGGAAACGTATCTCGGTGGATTCAGCTGCCTTGTTCTTTTCTTC
TTCCCCTTCTCACCATGCAATCCCCCCTTTTCTCTTCACCTCTCTTAGCA
GCAGCACCAGCAGTACTATGCCCAGGCGCAACAAGCGGCTGCCTACGCCG
CTGCCATGCCTCCTGCTCCTGCCCCAGCGCCCGCTTCGGCCCCTCCACCG
GTACCTCCTGAAATCGCGGACAATGTGGAGGAGGGCTATCAACCCGTCTA
CGACCCCAAGACCCAGTACTGGTATTTTTGGAACGCGGCGTCCAATCAGG
TCACGTGGGAGAAGCCTTTGAAAGACAAGAGCAAGGCATTTGTGCCCCCC
CCGCCACCGGGATCGCCACCCAAATGAGAAAGGAGGGGAGGAGGGGAAAC
GGAAAGGAAGAATGGGGTAGGGCGCCCGGGGGAAGGATGGTAACATTCCG
GCACGACAAGGACATGAACTGGTGCCAATCTTGTGGTTGTTTCTTTTCAT
TCTTACTTCGTGCCACAATGCCAAACACATCCCGG
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Coding sequence (CDS) from alignment at CM002474.1:41822..43356-

>rna7816 ID=rna7816|Name=rna7816|organism=Nannochloropsis gaditana|type=CDS|length=1626bp|location=Sequence derived from alignment at CM002474.1:41822..43356- (Nannochloropsis gaditana)
CAGCAGCACCAGCAGTACTATGCCCAGGCGCAACAAGCGGCTGCCTACGC
CGCTGCCATGCCTCCTGCTCCTGCCCCAGCGCCCGCTTCGGCCCCTCCAC
CGGTACCTCCTGAAATCGCGGACAATGTGGAGGAGGGCTATCAACCCGTC
TACGACCCCAAGACCCAGTACTGGTATTTTTGGAACGCGGCGTCCAATCA
GGTCACGTGGGAGAAGCCTTTGAAAGACAAGAGCAAGGCATTTGTGCCCC
CCCCGCCACCGGGATCGCCACCCAAATGAATGACTAAAGAAGGTGGGCCG
ACCCAGACTGCGGAGGCGCGCAGCAGCAGCAATGGCGACCACAGTGGCAG
CAATACAAATCCTCTCGGGGGACTCCAAGACCATGTCTCCACTACGAATG
TGCCCCAGGGAGGCCGACGGTCCAGATGGGAAGCTGATCAGCCTTCCCAG
GCTGCCCTTCCTACATCGGCTCCCGCCCAACATTCCAGTATCAAACAAGC
ACCGACGCCCCCCCCAGCGCGAGCAGCCTCCCCTTCTCCTGCCAATGCCA
ATCCTACGACCATCAGCGCGCCGCCAGTGCTGGGAGCTGCACCGTCCTCA
ACCACACCGGCCTCGGGCGAAGGCACCGCTTTGGCATCTGCGGCCTATGG
GAGCTTATCCACGTCTGGAACCAATGCTCCCACCGCCAGCACGGCGGGCT
ATCCGCAAATGCACATGCAGCATCAGCAGGCCTACGGCAACTGGCAACAT
CCCCTCCAGCACCCTCAGGGTCAACAAGACTACTACCACCAGTATTACCA
GCAGCAGCAAATGCAGCAGCACCAGCAGTACTATGCCCAGGCGCAACAAG
CGGCTGCCTACGCCGCTGCCATGCCTCCTGCTCCTGCCCCAGCGCCCGCT
TCGGCCCCTCCACCGGTACCTCCTGAAATCGCGGACAATGTGGAGGAGGG
CTATCAACCCGTCTACGACCCCAAGACCCAGTACTGGTATTTTTGGAACG
CGGCGTCCAATCAGGTCACGTGGGAGAAGCCTTTGAAAGACAAGAGCAAG
GCATTTGTGCCCCCCCCGCCACCGGGATCGCCACCCAAATGAATGACTAA
AGAAGGTGGGCCGACCCAGACTGCGGAGGCGCGCAGCAGCAGCAATGGCG
ACCACAGTGGCAGCAATACAAATCCTCTCGGGGGACTCCAAGACCATGTC
TCCACTACGAATGTGCCCCAGGGAGGCCGACGGTCCAGATGGGAAGCTGA
TCAGCCTTCCCAGGCTGCCCTTCCTACATCGGCTCCCGCCCAACATTCCA
GTATCAAACAAGCACCGACGCCCCCCCCAGCGCGAGCAGCCTCCCCTTCT
CCTGCCAATGCCAATCCTACGACCATCAGCGCGCCGCCAGTGCTGGGAGC
TGCACCGTCCTCAACCACACCGGCCTCGGGCGAAGGCACCGCTTTGGCAT
CTGCGGCCTATGGGAGCTTATCCACGTCTGGAACCAATGCTCCCACCGCC
AGCACGGCGGGCTATCCGCAAATGCACATGCAGCATCAGCAGGCCTACGG
CAACTGGCAACATCCCCTCCAGCACCCTCAGGGTCAACAAGACTACTACC
ACCAGTATTACCAGCAGCAGCAAATG
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Synonyms
Publications